David Porubsky
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/breakpointR |
| Branch: RELEASE_3_8 |
| Last Commit: 1e59604 |
| Last Changed Date: 2018-10-30 11:42:10 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:29:42 -0400 (Sat, 13 Apr 2019).
| Package 176/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| breakpointR 1.0.0 David Porubsky
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | OK | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: breakpointR |
| Version: 1.0.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/breakpointR_1.0.0.tar.gz && rm -rf breakpointR.buildbin-libdir && mkdir breakpointR.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=breakpointR.buildbin-libdir breakpointR_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL breakpointR_1.0.0.zip && rm breakpointR_1.0.0.tar.gz breakpointR_1.0.0.zip |
| StartedAt: 2019-04-12 19:42:03 -0400 (Fri, 12 Apr 2019) |
| EndedAt: 2019-04-12 19:43:11 -0400 (Fri, 12 Apr 2019) |
| EllapsedTime: 68.6 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/breakpointR_1.0.0.tar.gz && rm -rf breakpointR.buildbin-libdir && mkdir breakpointR.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=breakpointR.buildbin-libdir breakpointR_1.0.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL breakpointR_1.0.0.zip && rm breakpointR_1.0.0.tar.gz breakpointR_1.0.0.zip
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install for i386
* installing *source* package 'breakpointR' ...
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'breakpointR'
finding HTML links ... done
BreakPoint html
finding level-2 HTML links ... done
breakSeekr html
breakpointR-package html
breakpointr html
breakpointr2UCSC html
collapseBins html
confidenceInterval html
confidenceInterval.binomial html
createCompositeFile html
deltaWCalculator html
exportRegions html
genotyping html
hotspotter html
insertchr html
loadFromFiles html
plotBreakpoints html
plotBreakpointsPerChr html
plotHeatmap html
ranges2UCSC html
readBamFileAsGRanges html
readConfig html
runBreakpointr html
summarizeBreaks html
synchronizeReadDir html
transCoord html
writeConfig html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'breakpointR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'breakpointR' as breakpointR_1.0.0.zip
* DONE (breakpointR)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'breakpointR' successfully unpacked and MD5 sums checked
In R CMD INSTALL