Back to Multiple platform build/check report for BioC 3.8
[A]BCDEFGHIJKLMNOPQRSTUVWXYZ

INSTALL report for artMS on tokay1

This page was generated on 2019-04-13 11:29:53 -0400 (Sat, 13 Apr 2019).

Package 77/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
artMS 1.0.12
David Jimenez-Morales
Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019)
URL: https://git.bioconductor.org/packages/artMS
Branch: RELEASE_3_8
Last Commit: cb3b4fc
Last Changed Date: 2019-04-07 21:39:33 -0400 (Sun, 07 Apr 2019)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: artMS
Version: 1.0.12
Command: C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/artMS_1.0.12.tar.gz && rm -rf artMS.buildbin-libdir && mkdir artMS.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=artMS.buildbin-libdir artMS_1.0.12.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL artMS_1.0.12.zip && rm artMS_1.0.12.tar.gz artMS_1.0.12.zip
StartedAt: 2019-04-12 20:30:34 -0400 (Fri, 12 Apr 2019)
EndedAt: 2019-04-12 20:31:48 -0400 (Fri, 12 Apr 2019)
EllapsedTime: 73.8 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/artMS_1.0.12.tar.gz && rm -rf artMS.buildbin-libdir && mkdir artMS.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=artMS.buildbin-libdir artMS_1.0.12.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL artMS_1.0.12.zip && rm artMS_1.0.12.tar.gz artMS_1.0.12.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 2490k  100 2490k    0     0  38.9M      0 --:--:-- --:--:-- --:--:-- 41.2M

install for i386

* installing *source* package 'artMS' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'artMS'
    finding HTML links ... done
    artmsAnalysisQuantifications            html  
    artmsAnnotateSpecie                     html  
    artmsAnnotationUniprot                  html  
    artmsAvgIntensityRT                     html  
    artmsChangeColumnName                   html  
    artmsConvertMetabolomics                html  
    artmsDataPlots                          html  
    artmsEnrichLog2fc                       html  
    artmsEnrichProfiler                     html  
    artmsEvidenceToSAINTq                   html  
    artmsEvidenceToSaintExpress             html  
    artmsFilterEvidenceContaminants         html  
    artmsGeneratePhSiteExtended             html  
    artmsIsEvidenceNewVersion               html  
    artmsIsSpeciesSupported                 html  
    artmsMapUniprot2Entrez                  html  
    artmsMergeEvidenceAndKeys               html  
    artmsMsstatsSummary                     html  
    artmsPhosfateOutput                     html  
    artmsPhotonOutput                       html  
    artmsPlotHeatmapQuant                   html  
    artmsProtein2SiteConversion             html  
    artmsQualityControlEvidenceBasic        html  
    artmsQualityControlEvidenceExtended     html  
    artmsQualityControlMetabolomics         html  
    artmsQualityControlSummaryExtended      html  
    artmsQuantification                     html  
    artmsReplicatePlots                     html  
    artmsResultsWide                        html  
    artmsSILACtoLong                        html  
    artmsSpectralCounts                     html  
    artmsVolcanoPlot                        html  
    artmsWriteConfigYamlFile                html  
    artms_config                            html  
    artms_data_corum_mito_database          html  
    artms_data_pathogen_LPN                 html  
    artms_data_pathogen_TB                  html  
    artms_data_ph_evidence                  html  
    artms_data_ph_keys                      html  
    artms_data_ph_msstats_results           html  
    artms_data_randomDF                     html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'artMS' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'artMS' as artMS_1.0.12.zip
* DONE (artMS)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'artMS' successfully unpacked and MD5 sums checked
In R CMD INSTALL