Gaëlle Lefort
| Snapshot Date: 2019-04-12 17:01:30 -0400 (Fri, 12 Apr 2019) |
| URL: https://git.bioconductor.org/packages/ASICS |
| Branch: RELEASE_3_8 |
| Last Commit: 1d8644d |
| Last Changed Date: 2018-10-30 11:42:08 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-13 11:29:06 -0400 (Sat, 13 Apr 2019).
| Package 81/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| ASICS 1.2.0 Gaëlle Lefort
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay1 | Windows Server 2012 R2 Standard / x64 | OK | OK | [ OK ] | OK | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: ASICS |
| Version: 1.2.0 |
| Command: C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ASICS.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings ASICS_1.2.0.tar.gz |
| StartedAt: 2019-04-13 00:34:35 -0400 (Sat, 13 Apr 2019) |
| EndedAt: 2019-04-13 00:46:30 -0400 (Sat, 13 Apr 2019) |
| EllapsedTime: 715.1 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: ASICS.Rcheck |
| Warnings: 0 |
##############################################################################
##############################################################################
###
### Running command:
###
### C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:ASICS.install-out.txt --library=C:\Users\biocbuild\bbs-3.8-bioc\R\library --no-vignettes --timings ASICS_1.2.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory 'C:/Users/biocbuild/bbs-3.8-bioc/meat/ASICS.Rcheck'
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'ASICS/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'ASICS' version '1.2.0'
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ...Warning: unable to access index for repository https://CRAN.R-project.org/src/contrib:
cannot open URL 'https://CRAN.R-project.org/src/contrib/PACKAGES'
OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'ASICS' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
ASICS 20.75 0.25 21.16
createPureLibrary 8.87 0.02 12.34
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
ASICS 26.11 0.13 26.24
createPureLibrary 10.54 0.02 10.55
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
Running 'testthat.R'
OK
** running tests for arch 'x64' ...
Running 'testthat.R'
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
ASICS.Rcheck/00install.out
##############################################################################
##############################################################################
###
### Running command:
###
### C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.8/bioc/src/contrib/ASICS_1.2.0.tar.gz && rm -rf ASICS.buildbin-libdir && mkdir ASICS.buildbin-libdir && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=ASICS.buildbin-libdir ASICS_1.2.0.tar.gz && C:\Users\biocbuild\bbs-3.8-bioc\R\bin\R.exe CMD INSTALL ASICS_1.2.0.zip && rm ASICS_1.2.0.tar.gz ASICS_1.2.0.zip
###
##############################################################################
##############################################################################
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 2566k 100 2566k 0 0 36.8M 0 --:--:-- --:--:-- --:--:-- 39.1M
install for i386
* installing *source* package 'ASICS' ...
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'ASICS'
finding HTML links ... done
ASICS html
ASICSResults-class html
ASICSUsersGuide html
AnalysisResults-class html
finding level-2 HTML links ... done
PureLibrary-class html
Spectra-class html
accessors-methods html
alignment html
baselineCorrection html
binning html
combineAndSubset-methods html
createPureLibrary html
createSpectra html
formatForAnalysis html
importSpectraBruker html
kruskalWallis html
normalisation html
oplsda html
pca html
pure_library html
summary-methods html
visualisation-methods-analyses html
visualisation-methods-spectra html
** building package indices
** installing vignettes
'ASICS.Rmd' using 'UTF-8'
'ASICSUsersGuide.Rmd' using 'UTF-8'
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'ASICS' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ASICS' as ASICS_1.2.0.zip
* DONE (ASICS)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.8-bioc/R/library'
package 'ASICS' successfully unpacked and MD5 sums checked
In R CMD INSTALL
|
ASICS.Rcheck/tests_i386/testthat.Rout
R version 3.5.3 (2019-03-11) -- "Great Truth"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: i386-w64-mingw32/i386 (32-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(ASICS)
>
> test_check("ASICS")
|
| | 0%
|
|= | 2%
|
|=== | 4%
|
|==== | 6%
|
|====== | 8%
|
|======= | 10%
|
|======== | 12%
|
|========== | 14%
|
|=========== | 16%
|
|============= | 18%
|
|============== | 20%
|
|=============== | 22%
|
|================= | 24%
|
|================== | 26%
|
|==================== | 28%
|
|===================== | 30%
|
|====================== | 32%
|
|======================== | 34%
|
|========================= | 36%
|
|=========================== | 38%
|
|============================ | 40%
|
|============================= | 42%
|
|=============================== | 44%
|
|================================ | 46%
|
|================================== | 48%
|
|=================================== | 50%
|
|==================================== | 52%
|
|====================================== | 54%
|
|======================================= | 56%
|
|========================================= | 58%
|
|========================================== | 60%
|
|=========================================== | 62%
|
|============================================= | 64%
|
|============================================== | 66%
|
|================================================ | 68%
|
|================================================= | 70%
|
|================================================== | 72%
|
|==================================================== | 74%
|
|===================================================== | 76%
|
|======================================================= | 78%
|
|======================================================== | 80%
|
|========================================================= | 82%
|
|=========================================================== | 84%
|
|============================================================ | 86%
|
|============================================================== | 88%
|
|=============================================================== | 90%
|
|================================================================ | 92%
|
|================================================================== | 94%
|
|=================================================================== | 96%
|
|===================================================================== | 98%
|
|======================================================================| 100%
|
| | 0%
|
|=================================== | 50%
|
|======================================================================| 100%
|
| | 0%
|
|======================================================================| 100%
|
| | 0%
|
|=================================== | 50%
|
|======================================================================| 100%
|
| | 0%
|
|================== | 25%
|
|=================================== | 50%
|
|==================================================== | 75%
|
|======================================================================| 100%
|
| | 0%
|
|================== | 25%
|
|=================================== | 50%
|
|==================================================== | 75%
|
|======================================================================| 100%
|
| | 0%
|
|================== | 25%
|
|=================================== | 50%
|
|==================================================== | 75%
|
|======================================================================| 100%
|
| | 0%
|
|======================================================================| 100%
|
| | 0%
|
|======================================================================| 100%
== testthat results ===========================================================
OK: 21 SKIPPED: 0 FAILED: 0
>
> proc.time()
user system elapsed
191.10 1.29 198.62
|
ASICS.Rcheck/tests_x64/testthat.Rout
R version 3.5.3 (2019-03-11) -- "Great Truth"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-w64-mingw32/x64 (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(ASICS)
>
> test_check("ASICS")
|
| | 0%
|
|= | 2%
|
|=== | 4%
|
|==== | 6%
|
|====== | 8%
|
|======= | 10%
|
|======== | 12%
|
|========== | 14%
|
|=========== | 16%
|
|============= | 18%
|
|============== | 20%
|
|=============== | 22%
|
|================= | 24%
|
|================== | 26%
|
|==================== | 28%
|
|===================== | 30%
|
|====================== | 32%
|
|======================== | 34%
|
|========================= | 36%
|
|=========================== | 38%
|
|============================ | 40%
|
|============================= | 42%
|
|=============================== | 44%
|
|================================ | 46%
|
|================================== | 48%
|
|=================================== | 50%
|
|==================================== | 52%
|
|====================================== | 54%
|
|======================================= | 56%
|
|========================================= | 58%
|
|========================================== | 60%
|
|=========================================== | 62%
|
|============================================= | 64%
|
|============================================== | 66%
|
|================================================ | 68%
|
|================================================= | 70%
|
|================================================== | 72%
|
|==================================================== | 74%
|
|===================================================== | 76%
|
|======================================================= | 78%
|
|======================================================== | 80%
|
|========================================================= | 82%
|
|=========================================================== | 84%
|
|============================================================ | 86%
|
|============================================================== | 88%
|
|=============================================================== | 90%
|
|================================================================ | 92%
|
|================================================================== | 94%
|
|=================================================================== | 96%
|
|===================================================================== | 98%
|
|======================================================================| 100%
|
| | 0%
|
|=================================== | 50%
|
|======================================================================| 100%
|
| | 0%
|
|======================================================================| 100%
|
| | 0%
|
|=================================== | 50%
|
|======================================================================| 100%
|
| | 0%
|
|================== | 25%
|
|=================================== | 50%
|
|==================================================== | 75%
|
|======================================================================| 100%
|
| | 0%
|
|================== | 25%
|
|=================================== | 50%
|
|==================================================== | 75%
|
|======================================================================| 100%
|
| | 0%
|
|================== | 25%
|
|=================================== | 50%
|
|==================================================== | 75%
|
|======================================================================| 100%
|
| | 0%
|
|======================================================================| 100%
|
| | 0%
|
|======================================================================| 100%
== testthat results ===========================================================
OK: 21 SKIPPED: 0 FAILED: 0
>
> proc.time()
user system elapsed
176.85 0.51 177.37
|
|
ASICS.Rcheck/examples_i386/ASICS-Ex.timings
|
ASICS.Rcheck/examples_x64/ASICS-Ex.timings
|