Back to Multiple platform build/check report for BioC 3.8
ABCDEFGHIJKL[M]NOPQRSTUVWXYZ

BUILD BIN report for miRsponge on merida1

This page was generated on 2019-04-16 12:00:54 -0400 (Tue, 16 Apr 2019).

Package 975/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
miRsponge 1.8.2
Junpeng Zhang
Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019)
URL: https://git.bioconductor.org/packages/miRsponge
Branch: RELEASE_3_8
Last Commit: 7f424e3
Last Changed Date: 2019-03-12 22:46:07 -0400 (Tue, 12 Mar 2019)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: miRsponge
Version: 1.8.2
Command: rm -rf miRsponge.buildbin-libdir && mkdir miRsponge.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh miRsponge_1.8.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R miRsponge.buildbin-libdir
StartedAt: 2019-04-16 04:23:46 -0400 (Tue, 16 Apr 2019)
EndedAt: 2019-04-16 04:24:30 -0400 (Tue, 16 Apr 2019)
EllapsedTime: 44.4 seconds
RetCode: 0
Status:  OK 
PackageFile: miRsponge_1.8.2.tgz
PackageFileSize: 655.8 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf miRsponge.buildbin-libdir && mkdir miRsponge.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh miRsponge_1.8.2.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R miRsponge.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=miRsponge.buildbin-libdir miRsponge_1.8.2.tar.gz'
>>>>>>> 

* installing *source* package ‘miRsponge’ ...
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c complex.c -o complex.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c registerDynamicSymbol.c -o registerDynamicSymbol.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o miRsponge.so complex.o registerDynamicSymbol.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.8-bioc/meat/miRsponge.buildbin-libdir/miRsponge/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (miRsponge)


>>>>>>> 
>>>>>>> FIXING LINKS FOR miRsponge.buildbin-libdir/miRsponge/libs//miRsponge.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "miRsponge.buildbin-libdir/miRsponge/libs//miRsponge.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "miRsponge.buildbin-libdir/miRsponge/libs//miRsponge.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "miRsponge.buildbin-libdir/miRsponge/libs//miRsponge.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "miRsponge.buildbin-libdir/miRsponge/libs//miRsponge.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "miRsponge.buildbin-libdir/miRsponge/libs//miRsponge.so"