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INSTALL report for genoCN on merida1

This page was generated on 2019-04-16 11:55:12 -0400 (Tue, 16 Apr 2019).

Package 616/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
genoCN 1.34.0
Wei Sun
Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019)
URL: https://git.bioconductor.org/packages/genoCN
Branch: RELEASE_3_8
Last Commit: 98a342d
Last Changed Date: 2018-10-30 11:41:46 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: genoCN
Version: 1.34.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL genoCN
StartedAt: 2019-04-15 17:59:27 -0400 (Mon, 15 Apr 2019)
EndedAt: 2019-04-15 17:59:49 -0400 (Mon, 15 Apr 2019)
EllapsedTime: 22.0 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL genoCN
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’
* installing *source* package ‘genoCN’ ...
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c tnorm_mle.c -o tnorm_mle.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c utility.c -o utility.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c xCNV.c -o xCNV.o
xCNV.c:317:25: warning: unused variable 'k' [-Wunused-variable]
  int L, N, M, K, i, z, k, nGtp, contam=*contamR, CNA=*CNAR;
                        ^
xCNV.c:317:16: warning: unused variable 'K' [-Wunused-variable]
  int L, N, M, K, i, z, k, nGtp, contam=*contamR, CNA=*CNAR;
               ^
xCNV.c:787:20: warning: unused variable 'sd_b_tmp' [-Wunused-variable]
  double mu_b_tmp, sd_b_tmp;
                   ^
xCNV.c:787:10: warning: unused variable 'mu_b_tmp' [-Wunused-variable]
  double mu_b_tmp, sd_b_tmp;
         ^
4 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o genoCN.so tnorm_mle.o utility.o xCNV.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.5/Resources/library/genoCN/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (genoCN)