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BUILD BIN report for flowPeaks on merida1

This page was generated on 2019-04-16 11:56:22 -0400 (Tue, 16 Apr 2019).

Package 540/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowPeaks 1.28.1
Yongchao Ge
Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019)
URL: https://git.bioconductor.org/packages/flowPeaks
Branch: RELEASE_3_8
Last Commit: 32d9195
Last Changed Date: 2019-01-04 13:09:34 -0400 (Fri, 04 Jan 2019)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: flowPeaks
Version: 1.28.1
Command: rm -rf flowPeaks.buildbin-libdir && mkdir flowPeaks.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh flowPeaks_1.28.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R flowPeaks.buildbin-libdir
StartedAt: 2019-04-16 04:03:42 -0400 (Tue, 16 Apr 2019)
EndedAt: 2019-04-16 04:04:31 -0400 (Tue, 16 Apr 2019)
EllapsedTime: 49.1 seconds
RetCode: 0
Status:  OK 
PackageFile: flowPeaks_1.28.1.tgz
PackageFileSize: 4.129 MiB

Command output

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###
### Running command:
###
###   rm -rf flowPeaks.buildbin-libdir && mkdir flowPeaks.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh flowPeaks_1.28.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R flowPeaks.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=flowPeaks.buildbin-libdir flowPeaks_1.28.1.tar.gz'
>>>>>>> 

* installing *source* package ‘flowPeaks’ ...
** libs
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  `gsl-config --cflags`  -fPIC  -Wall -g -O2  -c Rpack.cpp -o Rpack.o
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  `gsl-config --cflags`  -fPIC  -Wall -g -O2  -c Rregistrate.cpp -o Rregistrate.o
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  `gsl-config --cflags`  -fPIC  -Wall -g -O2  -c VoronoiDiagramGenerator.cpp -o VoronoiDiagramGenerator.o
VoronoiDiagramGenerator.cpp:803:5: warning: logical not is only applied to the left hand side of this bitwise operator [-Wlogical-not-parentheses]
        if(!triangulate & plot & !debug)
           ^            ˜
VoronoiDiagramGenerator.cpp:803:5: note: add parentheses after the '!' to evaluate the bitwise operator first
        if(!triangulate & plot & !debug)
           ^
            (                 )
VoronoiDiagramGenerator.cpp:803:5: note: add parentheses around left hand side expression to silence this warning
        if(!triangulate & plot & !debug)
           ^
           (           )
1 warning generated.
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  `gsl-config --cflags`  -fPIC  -Wall -g -O2  -c flowPeaks.cpp -o flowPeaks.o
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  `gsl-config --cflags`  -fPIC  -Wall -g -O2  -c func_collect.cpp -o func_collect.o
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  `gsl-config --cflags`  -fPIC  -Wall -g -O2  -c func_collect_supp.cpp -o func_collect_supp.o
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  `gsl-config --cflags`  -fPIC  -Wall -g -O2  -c gvector_gmatrix.cpp -o gvector_gmatrix.o
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  `gsl-config --cflags`  -fPIC  -Wall -g -O2  -c kd_tree.cpp -o kd_tree.o
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include  `gsl-config --cflags`  -fPIC  -Wall -g -O2  -c kmns.cpp -o kmns.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o flowPeaks.so Rpack.o Rregistrate.o VoronoiDiagramGenerator.o flowPeaks.o func_collect.o func_collect_supp.o gvector_gmatrix.o kd_tree.o kmns.o -L/usr/local/lib -lgsl -lgslcblas -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.8-bioc/meat/flowPeaks.buildbin-libdir/flowPeaks/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (flowPeaks)


>>>>>>> 
>>>>>>> FIXING LINKS FOR flowPeaks.buildbin-libdir/flowPeaks/libs//flowPeaks.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "flowPeaks.buildbin-libdir/flowPeaks/libs//flowPeaks.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "flowPeaks.buildbin-libdir/flowPeaks/libs//flowPeaks.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "flowPeaks.buildbin-libdir/flowPeaks/libs//flowPeaks.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "flowPeaks.buildbin-libdir/flowPeaks/libs//flowPeaks.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "flowPeaks.buildbin-libdir/flowPeaks/libs//flowPeaks.so"