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BUILD BIN report for dSimer on merida1

This page was generated on 2019-04-16 11:59:39 -0400 (Tue, 16 Apr 2019).

Package 438/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
dSimer 1.8.0
Peng Ni
Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019)
URL: https://git.bioconductor.org/packages/dSimer
Branch: RELEASE_3_8
Last Commit: 78df868
Last Changed Date: 2018-10-30 11:42:01 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: dSimer
Version: 1.8.0
Command: rm -rf dSimer.buildbin-libdir && mkdir dSimer.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh dSimer_1.8.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R dSimer.buildbin-libdir
StartedAt: 2019-04-16 03:58:44 -0400 (Tue, 16 Apr 2019)
EndedAt: 2019-04-16 04:00:08 -0400 (Tue, 16 Apr 2019)
EllapsedTime: 84.6 seconds
RetCode: 0
Status:  OK 
PackageFile: dSimer_1.8.0.tgz
PackageFileSize: 4.144 MiB

Command output

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### Running command:
###
###   rm -rf dSimer.buildbin-libdir && mkdir dSimer.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh dSimer_1.8.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R dSimer.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=dSimer.buildbin-libdir dSimer_1.8.0.tar.gz'
>>>>>>> 

* installing *source* package ‘dSimer’ ...
** libs
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c BOG.cpp -o BOG.o
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c GO2GeneAssos.cpp -o GO2GeneAssos.o
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c ICod.cpp -o ICod.o
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c PSB.cpp -o PSB.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c R_dSimer_init.c -o R_dSimer_init.o
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c RcppExports.cpp -o RcppExports.o
clang++  -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.5/Resources/library/Rcpp/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c Sun.cpp -o Sun.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o dSimer.so BOG.o GO2GeneAssos.o ICod.o PSB.o R_dSimer_init.o RcppExports.o Sun.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.8-bioc/meat/dSimer.buildbin-libdir/dSimer/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (dSimer)


>>>>>>> 
>>>>>>> FIXING LINKS FOR dSimer.buildbin-libdir/dSimer/libs//dSimer.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgcc_s.1.dylib" "dSimer.buildbin-libdir/dSimer/libs//dSimer.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libgfortran.3.dylib" "dSimer.buildbin-libdir/dSimer/libs//dSimer.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.5.2.dylib" "dSimer.buildbin-libdir/dSimer/libs//dSimer.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libreadline.dylib" "dSimer.buildbin-libdir/dSimer/libs//dSimer.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.5/Resources/lib/libquadmath.0.dylib" "dSimer.buildbin-libdir/dSimer/libs//dSimer.so"