Charles E. Determan Jr.
| Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019) |
| URL: https://git.bioconductor.org/packages/OmicsMarkeR |
| Branch: RELEASE_3_8 |
| Last Commit: 8b71dd1 |
| Last Changed Date: 2018-10-30 11:41:57 -0400 (Tue, 30 Oct 2018) |
| Back to Multiple platform build/check report for BioC 3.8 |
|
This page was generated on 2019-04-16 11:51:13 -0400 (Tue, 16 Apr 2019).
| Package 1084/1649 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| OmicsMarkeR 1.14.0 Charles E. Determan Jr.
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | [ OK ] | | ||||||
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
| Package: OmicsMarkeR |
| Version: 1.14.0 |
| Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:OmicsMarkeR.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings OmicsMarkeR_1.14.0.tar.gz |
| StartedAt: 2019-04-16 01:51:43 -0400 (Tue, 16 Apr 2019) |
| EndedAt: 2019-04-16 01:55:22 -0400 (Tue, 16 Apr 2019) |
| EllapsedTime: 219.2 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: OmicsMarkeR.Rcheck |
| Warnings: 0 |
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### Running command:
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### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:OmicsMarkeR.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings OmicsMarkeR_1.14.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/OmicsMarkeR.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘OmicsMarkeR/DESCRIPTION’ ... OK
* this is package ‘OmicsMarkeR’ version ‘1.14.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘OmicsMarkeR’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
user system elapsed
perm.class 14.560 0.008 14.609
feature.table 12.444 0.064 12.555
perm.features 12.300 0.000 12.321
predictNewClasses 10.508 0.004 10.539
fs.stability 10.208 0.008 10.228
performance.metrics 9.284 0.004 9.294
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
Running ‘testthat.R’
OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: OK
OmicsMarkeR.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL OmicsMarkeR ### ############################################################################## ############################################################################## * installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’ * installing *source* package ‘OmicsMarkeR’ ... ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (OmicsMarkeR)
OmicsMarkeR.Rcheck/tests/testthat.Rout
R version 3.5.3 (2019-03-11) -- "Great Truth"
Copyright (C) 2019 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu (64-bit)
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> library(testthat)
> library(OmicsMarkeR)
>
> test_check("OmicsMarkeR")
══ testthat results ═══════════════════════════════════════════════════════════
OK: 100 SKIPPED: 0 FAILED: 0
>
> proc.time()
user system elapsed
66.772 0.180 67.077
OmicsMarkeR.Rcheck/OmicsMarkeR-Ex.timings
| name | user | system | elapsed | |
| RPT | 0.008 | 0.000 | 0.065 | |
| aggregation | 0.008 | 0.000 | 0.006 | |
| canberra | 0.004 | 0.000 | 0.003 | |
| canberra_stability | 0.004 | 0.000 | 0.001 | |
| create.corr.matrix | 0.008 | 0.000 | 0.010 | |
| create.discr.matrix | 0.008 | 0.000 | 0.008 | |
| create.random.matrix | 0.000 | 0.004 | 0.008 | |
| denovo.grid | 0.016 | 0.000 | 0.017 | |
| feature.table | 12.444 | 0.064 | 12.555 | |
| fit.only.model | 3.988 | 0.000 | 4.001 | |
| fs.ensembl.stability | 0 | 0 | 0 | |
| fs.stability | 10.208 | 0.008 | 10.228 | |
| jaccard | 0.000 | 0.000 | 0.001 | |
| kuncheva | 0.000 | 0.000 | 0.001 | |
| modelList | 0.000 | 0.000 | 0.002 | |
| ochiai | 0.000 | 0.000 | 0.001 | |
| pairwise.model.stability | 0.008 | 0.000 | 0.008 | |
| pairwise.stability | 0.004 | 0.000 | 0.003 | |
| params | 0.004 | 0.000 | 0.001 | |
| performance.metrics | 9.284 | 0.004 | 9.294 | |
| perm.class | 14.560 | 0.008 | 14.609 | |
| perm.features | 12.300 | 0.000 | 12.321 | |
| pof | 0.004 | 0.000 | 0.001 | |
| predictNewClasses | 10.508 | 0.004 | 10.539 | |
| sorensen | 0.000 | 0.000 | 0.001 | |
| spearman | 0.004 | 0.000 | 0.001 | |
| svmrfeFeatureRanking | 0.088 | 0.000 | 0.088 | |
| svmrfeFeatureRankingForMulticlass | 0.188 | 0.000 | 0.195 | |