GenomicScores 1.6.0
Robert Castelo
| Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019) |
| URL: https://git.bioconductor.org/packages/GenomicScores |
| Branch: RELEASE_3_8 |
| Last Commit: 6644e90 |
| Last Changed Date: 2018-10-30 11:42:04 -0400 (Tue, 30 Oct 2018) |
| malbec1 | Linux (Ubuntu 16.04.6 LTS) / x86_64 | OK | OK | WARNINGS | |  |
| merida1 | OS X 10.11.6 El Capitan / x86_64 | OK | [ ERROR ] | skipped | skipped | |
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### Running command:
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### /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data GenomicScores
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* checking for file ‘GenomicScores/DESCRIPTION’ ... OK
* preparing ‘GenomicScores’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: S4Vectors
Loading required package: stats4
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, basename, cbind, colMeans, colSums, colnames,
dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
intersect, is.unsorted, lapply, lengths, mapply, match, mget,
order, paste, pmax, pmax.int, pmin, pmin.int, rank, rbind,
rowMeans, rowSums, rownames, sapply, setdiff, sort, table, tapply,
union, unique, unsplit, which, which.max, which.min
Attaching package: 'S4Vectors'
The following object is masked from 'package:base':
expand.grid
Loading required package: GenomicRanges
Loading required package: IRanges
Loading required package: GenomeInfoDb
Attaching package: 'GenomicScores'
The following object is masked from 'package:utils':
citation
Quitting from lines 108-111 (GenomicScores.Rmd)
Error: processing vignette 'GenomicScores.Rmd' failed with diagnostics:
package or namespace load failed for 'phastCons100way.UCSC.hg19':
.onLoad failed in loadNamespace() for 'phastCons100way.UCSC.hg19', details:
call: readRDS(file.path(extdata_dirpath, basename(rownames(finfo)[which.min(finfo$size)])))
error: error reading from connection
Execution halted