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INSTALL report for CGEN on merida1

This page was generated on 2019-04-16 11:55:18 -0400 (Tue, 16 Apr 2019).

Package 227/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CGEN 3.18.0
William Wheeler
Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019)
URL: https://git.bioconductor.org/packages/CGEN
Branch: RELEASE_3_8
Last Commit: 6454ffc
Last Changed Date: 2018-10-30 11:41:46 -0400 (Tue, 30 Oct 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: CGEN
Version: 3.18.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL CGEN
StartedAt: 2019-04-15 18:06:52 -0400 (Mon, 15 Apr 2019)
EndedAt: 2019-04-15 18:07:20 -0400 (Mon, 15 Apr 2019)
EllapsedTime: 27.9 seconds
RetCode: 0
Status:  OK 

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL CGEN
###
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* installing to library ‘/Library/Frameworks/R.framework/Versions/3.5/Resources/library’
* installing *source* package ‘CGEN’ ...
** libs
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c Additive.c -o Additive.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c CML.c -o CML.o
CML.c:132:13: warning: unused function 'print_dVec' [-Wunused-function]
static void print_dVec(vec, n, name)
            ^
1 warning generated.
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c ccl.c -o ccl.o
ccl.c:386:13: warning: function 'tree_print' is not needed and will not be emitted [-Wunneeded-internal-declaration]
static void tree_print(tnode *node, int is_root)
            ^
1 warning generated.
gfortran   -fPIC  -g -O2  -c csclust.f -o csclust.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c fsclust.c -o fsclust.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c hcl.c -o hcl.o
hcl.c:375:13: warning: function 'tree_print' is not needed and will not be emitted [-Wunneeded-internal-declaration]
static void tree_print(tnode *node, int is_root)
            ^
1 warning generated.
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c pmatch.c -o pmatch.o
clang -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c score.c -o score.o
score.c:18:27: warning: unused variable 'ii' [-Wunused-variable]
  int  nr, nc, i, j, row, ii, nc2;
                          ^
score.c:183:11: warning: unused variable 'p4' [-Wunused-variable]
  double *p4, *p5, *p6;
          ^
score.c:183:21: warning: unused variable 'p6' [-Wunused-variable]
  double *p4, *p5, *p6;
                    ^
score.c:183:16: warning: unused variable 'p5' [-Wunused-variable]
  double *p4, *p5, *p6;
               ^
4 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CGEN.so Additive.o CML.o ccl.o csclust.o fsclust.o hcl.o pmatch.o score.o -L/usr/local/gfortran/lib/gcc/x86_64-apple-darwin15/6.1.0 -L/usr/local/gfortran/lib -lgfortran -lquadmath -lm -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.5/Resources/library/CGEN/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (CGEN)