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CHECK report for BiocVersion on malbec1

This page was generated on 2019-04-16 11:53:32 -0400 (Tue, 16 Apr 2019).

Package 146/1649HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiocVersion 3.8.0
Bioconductor Package Maintainer
Snapshot Date: 2019-04-15 17:01:12 -0400 (Mon, 15 Apr 2019)
URL: https://git.bioconductor.org/packages/BiocVersion
Branch: RELEASE_3_8
Last Commit: 4d09de4
Last Changed Date: 2018-05-01 10:56:05 -0400 (Tue, 01 May 2018)
malbec1 Linux (Ubuntu 16.04.6 LTS) / x86_64  OK  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository
merida1 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: BiocVersion
Version: 3.8.0
Command: /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:BiocVersion.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings BiocVersion_3.8.0.tar.gz
StartedAt: 2019-04-15 22:30:18 -0400 (Mon, 15 Apr 2019)
EndedAt: 2019-04-15 22:36:48 -0400 (Mon, 15 Apr 2019)
EllapsedTime: 390.4 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: BiocVersion.Rcheck
Warnings: 1

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD check --install=check:BiocVersion.install-out.txt --library=/home/biocbuild/bbs-3.8-bioc/R/library --no-vignettes --timings BiocVersion_3.8.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.8-bioc/meat/BiocVersion.Rcheck’
* using R version 3.5.3 (2019-03-11)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘BiocVersion/DESCRIPTION’ ... OK
* this is package ‘BiocVersion’ version ‘3.8.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘BiocVersion’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Unknown package ‘Bioconductor’ in Rd xrefs
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING
See
  ‘/home/biocbuild/bbs-3.8-bioc/meat/BiocVersion.Rcheck/00check.log’
for details.



Installation output

BiocVersion.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.8-bioc/R/bin/R CMD INSTALL BiocVersion
###
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* installing to library ‘/home/biocbuild/bbs-3.8-bioc/R/library’
* installing *source* package ‘BiocVersion’ ...
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (BiocVersion)

Tests output


Example timings

BiocVersion.Rcheck/BiocVersion-Ex.timings

nameusersystemelapsed
BiocVersion-pkg0.0000.0000.002