Back to Multiple platform build/check report for BioC 3.7 experimental data

CHECK report for facopy.annot on malbec2

This page was generated on 2018-10-16 14:18:50 -0400 (Tue, 16 Oct 2018).

Package 98/342HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
facopy.annot 0.114.0
David Mosen-Ansorena
Snapshot Date: 2018-10-16 07:35:22 -0400 (Tue, 16 Oct 2018)
URL: https://git.bioconductor.org/packages/facopy.annot
Branch: RELEASE_3_7
Last Commit: 2961887
Last Changed Date: 2018-04-30 10:31:29 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: facopy.annot
Version: 0.114.0
Command: /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:facopy.annot.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings facopy.annot_0.114.0.tar.gz
StartedAt: 2018-10-16 10:54:05 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 10:54:35 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 29.2 seconds
RetCode: 0
Status:  OK 
CheckDir: facopy.annot.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD check --install=check:facopy.annot.install-out.txt --library=/home/biocbuild/bbs-3.7-bioc/R/library --no-vignettes --timings facopy.annot_0.114.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.7-data-experiment/meat/facopy.annot.Rcheck’
* using R version 3.5.1 Patched (2018-07-12 r74967)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘facopy.annot/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘facopy.annot’ version ‘0.114.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘facopy.annot’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  6.2Mb
  sub-directories of 1Mb or more:
    data   5.9Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.7-data-experiment/meat/facopy.annot.Rcheck/00check.log’
for details.



Installation output

facopy.annot.Rcheck/00install.out

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### Running command:
###
###   /home/biocbuild/bbs-3.7-bioc/R/bin/R CMD INSTALL facopy.annot
###
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* installing to library ‘/home/biocbuild/bbs-3.7-bioc/R/library’
* installing *source* package ‘facopy.annot’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (facopy.annot)

Tests output


Example timings

facopy.annot.Rcheck/facopy.annot-Ex.timings

nameusersystemelapsed
hg18_armLimits0.0080.0040.011
hg18_db_gsk_bladder0.0080.0000.006
hg18_db_gsk_blood0.0080.0000.009
hg18_db_gsk_bone0.0040.0040.005
hg18_db_gsk_brain0.0080.0000.006
hg18_db_gsk_breast0.0080.0000.009
hg18_db_gsk_cervix0.0080.0000.006
hg18_db_gsk_cns0.0080.0000.008
hg18_db_gsk_colon0.0080.0000.008
hg18_db_gsk_connective_tissue0.0080.0000.006
hg18_db_gsk_esophagus0.0040.0000.006
hg18_db_gsk_eye0.0000.0000.002
hg18_db_gsk_kidney0.0080.0000.007
hg18_db_gsk_liver0.0080.0000.008
hg18_db_gsk_lung0.0120.0000.010
hg18_db_gsk_muscle0.0040.0000.006
hg18_db_gsk_ovary0.0040.0000.006
hg18_db_gsk_pancreas0.0080.0000.007
hg18_db_gsk_pharynx0.0080.0000.006
hg18_db_gsk_placenta0.0040.0000.006
hg18_db_gsk_prostate0.0000.0040.007
hg18_db_gsk_rectum0.0040.0000.005
hg18_db_gsk_sarcoma0.0040.0000.004
hg18_db_gsk_stomach0.0080.0000.006
hg18_db_gsk_synovium0.0000.0000.002
hg18_db_gsk_thyroid0.0040.0000.006
hg18_db_gsk_uterus0.0120.0000.009
hg18_db_nci600.0080.0000.009
hg18_db_tcga_blca0.0080.0040.009
hg18_db_tcga_brca0.0080.0000.010
hg18_db_tcga_cesc0.0120.0000.009
hg18_db_tcga_coad0.0080.0000.010
hg18_db_tcga_gbm0.0080.0000.009
hg18_db_tcga_hnsc0.0080.0000.009
hg18_db_tcga_kirc0.0080.0000.009
hg18_db_tcga_kirp0.0080.0000.010
hg18_db_tcga_lgg0.0080.0000.009
hg18_db_tcga_lihc0.0080.0000.009
hg18_db_tcga_luad0.0080.0000.010
hg18_db_tcga_lusc0.0120.0000.010
hg18_db_tcga_ov0.0080.0000.010
hg18_db_tcga_prad0.0120.0000.010
hg18_db_tcga_read0.0080.0000.010
hg18_db_tcga_stad0.0080.0000.010
hg18_db_tcga_thca0.0080.0000.008
hg18_db_tcga_ucec0.0080.0000.010
hg18_feature_cancergene0.0040.0000.005
hg18_feature_ensembl0.0560.0040.062
hg18_feature_lincRNA0.0080.0000.011
hg18_feature_mirnas0.0040.0000.004
hg18_feature_oncogene0.0040.0000.003
hg18_feature_tumorsupressor0.0040.0000.003
hg19_armLimits0.0000.0000.001
hg19_db_gsk_bladder0.0080.0000.008
hg19_db_gsk_blood0.0080.0000.008
hg19_db_gsk_bone0.0040.0000.006
hg19_db_gsk_brain0.0040.0000.007
hg19_db_gsk_breast0.0080.0000.009
hg19_db_gsk_cervix0.0040.0000.007
hg19_db_gsk_cns0.0080.0000.007
hg19_db_gsk_colon0.0080.0000.008
hg19_db_gsk_connective_tissue0.0040.0000.005
hg19_db_gsk_esophagus0.0080.0000.006
hg19_db_gsk_eye0.0000.0000.002
hg19_db_gsk_kidney0.0040.0000.006
hg19_db_gsk_liver0.0080.0000.007
hg19_db_gsk_lung0.0080.0000.010
hg19_db_gsk_muscle0.0080.0000.006
hg19_db_gsk_ovary0.0040.0000.007
hg19_db_gsk_pancreas0.0040.0000.007
hg19_db_gsk_pharynx0.0080.0000.006
hg19_db_gsk_placenta0.0040.0000.005
hg19_db_gsk_prostate0.0080.0000.007
hg19_db_gsk_rectum0.0080.0000.005
hg19_db_gsk_sarcoma0.0040.0000.003
hg19_db_gsk_stomach0.0040.0000.006
hg19_db_gsk_synovium0.0000.0000.001
hg19_db_gsk_thyroid0.0080.0000.006
hg19_db_gsk_uterus0.0040.0040.007
hg19_db_nci600.0120.0000.011
hg19_db_tcga_blca0.0120.0000.011
hg19_db_tcga_brca0.0120.0000.011
hg19_db_tcga_cesc0.0080.0000.009
hg19_db_tcga_coad0.0120.0000.009
hg19_db_tcga_gbm0.0120.0000.010
hg19_db_tcga_hnsc0.0080.0000.010
hg19_db_tcga_kirc0.0120.0000.010
hg19_db_tcga_kirp0.0080.0040.011
hg19_db_tcga_lgg0.0080.0000.010
hg19_db_tcga_lihc0.0080.0000.011
hg19_db_tcga_luad0.0080.0000.011
hg19_db_tcga_lusc0.0120.0000.011
hg19_db_tcga_ov0.0120.0000.010
hg19_db_tcga_prad0.0080.0000.009
hg19_db_tcga_read0.0120.0000.010
hg19_db_tcga_stad0.0120.0000.012
hg19_db_tcga_thca0.0080.0000.010
hg19_db_tcga_ucec0.0080.0000.010
hg19_feature_cancergene0.0040.0000.004
hg19_feature_ensembl0.1080.0000.110
hg19_feature_lincRNA0.0120.0000.012
hg19_feature_mirnas0.0080.0000.006
hg19_feature_oncogene0.0040.0000.003
hg19_feature_tumorsupressor0.0040.0000.003
mm8_armLimits0.0000.0000.003
mm8_feature_ensembl0.1240.0000.122
mm8_feature_mirnas0.0040.0000.004