Bioconductor Package Maintainer
| Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018) |
| URL: https://git.bioconductor.org/packages/chipseq |
| Branch: RELEASE_3_7 |
| Last Commit: e9c5196 |
| Last Changed Date: 2018-04-30 10:35:11 -0400 (Mon, 30 Apr 2018) |
| Back to Multiple platform build/check report for BioC 3.7 |
|
This page was generated on 2018-10-17 08:34:18 -0400 (Wed, 17 Oct 2018).
| Package 234/1561 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| chipseq 1.30.0 Bioconductor Package Maintainer
| malbec2 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | | ||||||
| merida2 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | WARNINGS | OK | |
| Package: chipseq |
| Version: 1.30.0 |
| Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/chipseq_1.30.0.tar.gz && rm -rf chipseq.buildbin-libdir && mkdir chipseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=chipseq.buildbin-libdir chipseq_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL chipseq_1.30.0.zip && rm chipseq_1.30.0.tar.gz chipseq_1.30.0.zip |
| StartedAt: 2018-10-16 20:00:57 -0400 (Tue, 16 Oct 2018) |
| EndedAt: 2018-10-16 20:01:59 -0400 (Tue, 16 Oct 2018) |
| EllapsedTime: 62.2 seconds |
| RetCode: 0 |
| Status: OK |
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### Running command:
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### C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/chipseq_1.30.0.tar.gz && rm -rf chipseq.buildbin-libdir && mkdir chipseq.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=chipseq.buildbin-libdir chipseq_1.30.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL chipseq_1.30.0.zip && rm chipseq_1.30.0.tar.gz chipseq_1.30.0.zip
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install for i386
* installing *source* package 'chipseq' ...
** libs
C:/Rtools/mingw_32/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O3 -Wall -std=gnu99 -mtune=generic -c rlesumprod.c -o rlesumprod.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o chipseq.dll tmp.def rlesumprod.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/chipseq.buildbin-libdir/chipseq/libs/i386
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'chipseq'
finding HTML links ... done
chipseqFilter html
coverageplot html
cstest html
diffPeakSummary html
estimate.mean.fraglen html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOggyqd/R.INSTALL1a9475b42c75/chipseq/man/estimate.mean.fraglen.Rd:48: file link 'GRanges' in package 'GenomicRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOggyqd/R.INSTALL1a9475b42c75/chipseq/man/estimate.mean.fraglen.Rd:50: file link 'RangedData' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOggyqd/R.INSTALL1a9475b42c75/chipseq/man/estimate.mean.fraglen.Rd:55: file link 'IntegerRangesList' in package 'IRanges' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOggyqd/R.INSTALL1a9475b42c75/chipseq/man/estimate.mean.fraglen.Rd:56: file link 'IntegerList' in package 'IRanges' does not exist and so has been treated as a topic
islandDepthPlot html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOggyqd/R.INSTALL1a9475b42c75/chipseq/man/islandDepthPlot.Rd:17: file link 'RleList-class' in package 'IRanges' does not exist and so has been treated as a topic
laneSubsample html
peakCutoff html
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpOggyqd/R.INSTALL1a9475b42c75/chipseq/man/peakCutoff.Rd:17: file link 'RleList-class' in package 'IRanges' does not exist and so has been treated as a topic
peakSummary-methods html
subsetSummary html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
* installing *source* package 'chipseq' ...
** libs
C:/Rtools/mingw_64/bin/gcc -I"C:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/include" -DNDEBUG -I"C:/extsoft/include" -O2 -Wall -std=gnu99 -mtune=generic -c rlesumprod.c -o rlesumprod.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o chipseq.dll tmp.def rlesumprod.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.7-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.7-bioc/meat/chipseq.buildbin-libdir/chipseq/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'chipseq' as chipseq_1.30.0.zip
* DONE (chipseq)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'chipseq' successfully unpacked and MD5 sums checked
In R CMD INSTALL