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INSTALL report for banocc on tokay2

This page was generated on 2018-10-17 08:43:48 -0400 (Wed, 17 Oct 2018).

Package 91/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
banocc 1.4.0
Emma Schwager
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/banocc
Branch: RELEASE_3_7
Last Commit: d937c6d
Last Changed Date: 2018-04-30 10:35:46 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  ERROR  skipped 
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] ERROR  skipped  skipped 
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: banocc
Version: 1.4.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/banocc_1.4.0.tar.gz && rm -rf banocc.buildbin-libdir && mkdir banocc.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=banocc.buildbin-libdir banocc_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL banocc_1.4.0.zip && rm banocc_1.4.0.tar.gz banocc_1.4.0.zip
StartedAt: 2018-10-16 19:21:24 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 19:22:36 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 72.3 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/banocc_1.4.0.tar.gz && rm -rf banocc.buildbin-libdir && mkdir banocc.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=banocc.buildbin-libdir banocc_1.4.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL banocc_1.4.0.zip && rm banocc_1.4.0.tar.gz banocc_1.4.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 51 25.3M   51 12.9M    0     0  71.1M      0 --:--:-- --:--:-- --:--:-- 73.6M
100 25.3M  100 25.3M    0     0  84.3M      0 --:--:-- --:--:-- --:--:-- 86.0M

install for i386

* installing *source* package 'banocc' ...
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'banocc'
    finding HTML links ... done
    banocc                                  html  
    banocc_model                            html  
    compositions_hard_null                  html  
    compositions_neg_spike                  html  
    compositions_null                       html  
    compositions_pos_spike                  html  
    counts_hard_null                        html  
    counts_neg_spike                        html  
    counts_null                             html  
    counts_pos_spike                        html  
    get_banocc_output                       html  
    run_banocc                              html  
    finding level-2 HTML links ... done

Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpcVR7kA/R.INSTALLe1838eaf3b/banocc/man/run_banocc.Rd:56: file link 'sampling' in package 'rstan' does not exist and so has been treated as a topic
Rd warning: C:/Users/biocbuild/bbs-3.7-bioc/tmpdir/RtmpcVR7kA/R.INSTALLe1838eaf3b/banocc/man/run_banocc.Rd:77: file link 'sampling' in package 'rstan' does not exist and so has been treated as a topic
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'banocc' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'banocc' as banocc_1.4.0.zip
* DONE (banocc)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'banocc' successfully unpacked and MD5 sums checked
In R CMD INSTALL