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INSTALL report for CausalR on tokay2

This page was generated on 2018-10-17 08:40:38 -0400 (Wed, 17 Oct 2018).

Package 194/1561HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CausalR 1.12.0
Glyn Bradley , Steven Barrett
Snapshot Date: 2018-10-15 16:45:08 -0400 (Mon, 15 Oct 2018)
URL: https://git.bioconductor.org/packages/CausalR
Branch: RELEASE_3_7
Last Commit: a1ad666
Last Changed Date: 2018-04-30 10:35:37 -0400 (Mon, 30 Apr 2018)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
merida2 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: CausalR
Version: 1.12.0
Command: C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/CausalR_1.12.0.tar.gz && rm -rf CausalR.buildbin-libdir && mkdir CausalR.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CausalR.buildbin-libdir CausalR_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL CausalR_1.12.0.zip && rm CausalR_1.12.0.tar.gz CausalR_1.12.0.zip
StartedAt: 2018-10-16 18:52:11 -0400 (Tue, 16 Oct 2018)
EndedAt: 2018-10-16 18:53:50 -0400 (Tue, 16 Oct 2018)
EllapsedTime: 98.1 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O https://malbec2.bioconductor.org/BBS/3.7/bioc/src/contrib/CausalR_1.12.0.tar.gz && rm -rf CausalR.buildbin-libdir && mkdir CausalR.buildbin-libdir && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=CausalR.buildbin-libdir CausalR_1.12.0.tar.gz && C:\Users\biocbuild\bbs-3.7-bioc\R\bin\R.exe CMD INSTALL CausalR_1.12.0.zip && rm CausalR_1.12.0.tar.gz CausalR_1.12.0.zip
###
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100  192k  100  192k    0     0  3012k      0 --:--:-- --:--:-- --:--:-- 3374k

install for i386

* installing *source* package 'CausalR' ...
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'CausalR'
    finding HTML links ... done
    AddIDsToVertices                        html  
    AddWeightsToEdges                       html  
    AnalyseExperimentalData                 html  
    AnalysePredictionsList                  html  
    CalculateEnrichmentPValue               html  
    CalculateSignificance                   html  
    CalculateSignificanceUsingCubicAlgorithm
                                            html  
    CalculateSignificanceUsingCubicAlgorithm1b
                                            html  
    CalculateSignificanceUsingQuarticAlgorithm
                                            html  
    CalculateTotalWeightForAllContingencyTables
                                            html  
    CalculateWeightGivenValuesInThreeByThreeContingencyTable
                                            html  
    CausalR-package                         html  
    CheckPossibleValuesAreValid             html  
    CheckRowAndColumnSumValuesAreValid      html  
    CompareHypothesis                       html  
    ComputeFinalDistribution                html  
    ComputePValueFromDistributionTable      html  
    CreateCCG                               html  
    CreateCG                                html  
    CreateNetworkFromTable                  html  
    DetermineInteractionTypeOfPath          html  
    FindApproximateValuesThatWillMaximiseDValue
                                            html  
    FindIdsOfConnectedNodesInSubgraph       html  
    FindMaximumDValue                       html  
    GetAllPossibleRoundingCombinations      html  
    GetApproximateMaximumDValueFromThreeByTwoContingencyTable
                                            html  
    GetApproximateMaximumDValueFromTwoByTwoContingencyTable
                                            html  
    GetCombinationsOfCorrectandIncorrectPredictions
                                            html  
    GetExplainedNodesOfCCG                  html  
    GetInteractionInformation               html  
    GetMatrixOfCausalRelationships          html  
    GetMaxDValueForAFamily                  html  
    GetMaxDValueForAThreeByTwoFamily        html  
    GetMaximumDValueFromTwoByTwoContingencyTable
                                            html  
    GetNodeID                               html  
    GetNodeName                             html  
    GetNumberOfPositiveAndNegativeEntries   html  
    GetPathsInSifFormat                     html  
    GetRegulatedNodes                       html  
    GetRowAndColumnSumValues                html  
    GetScoreForNumbersOfCorrectandIncorrectPredictions
                                            html  
    GetScoresForSingleNode                  html  
    GetScoresWeightsMatrix                  html  
    GetScoresWeightsMatrixByCubicAlg        html  
    GetSetOfDifferentiallyExpressedGenes    html  
    GetSetOfSignificantPredictions          html  
    GetShortestPathsFromCCG                 html  
    GetWeightForNumbersOfCorrectandIncorrectPredictions
                                            html  
    GetWeightsAboveHypothesisScoreAndTotalWeights
                                            html  
    GetWeightsAboveHypothesisScoreForAThreeByTwoTable
                                            html  
    GetWeightsFromInteractionInformation    html  
    MakePredictions                         html  
    MakePredictionsFromCCG                  html  
    MakePredictionsFromCG                   html  
    OrderHypotheses                         html  
    PlotGraphWithNodeNames                  html  
    PopulateTheThreeByThreeContingencyTable
                                            html  
    PopulateTwoByTwoContingencyTable        html  
    ProcessExperimentalData                 html  
    RankTheHypotheses                       html  
    ReadExperimentalData                    html  
    ReadSifFileToTable                      html  
    RemoveIDsNotInExperimentalData          html  
    ScoreHypothesis                         html  
    ValidateFormatOfDataTable               html  
    ValidateFormatOfTable                   html  
    WriteAllExplainedNodesToSifFile         html  
    WriteExplainedNodesToSifFile            html  
    runRankHypothesis                       html  
    runSCANR                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'CausalR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CausalR' as CausalR_1.12.0.zip
* DONE (CausalR)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.7-bioc/R/library'
package 'CausalR' successfully unpacked and MD5 sums checked
In R CMD INSTALL