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CHECK report for waveTilingData on malbec1

This page was generated on 2018-04-12 12:49:24 -0400 (Thu, 12 Apr 2018).

Package 316/326HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
waveTilingData 1.14.0
Kristof De Beuf
Snapshot Date: 2018-04-12 07:35:06 -0400 (Thu, 12 Apr 2018)
URL: https://git.bioconductor.org/packages/waveTilingData
Branch: RELEASE_3_6
Last Commit: 7cc0331
Last Changed Date: 2017-10-30 11:58:24 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: waveTilingData
Version: 1.14.0
Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings waveTilingData_1.14.0.tar.gz
StartedAt: 2018-04-12 10:42:43 -0400 (Thu, 12 Apr 2018)
EndedAt: 2018-04-12 10:44:50 -0400 (Thu, 12 Apr 2018)
EllapsedTime: 126.9 seconds
RetCode: 0
Status:  OK 
CheckDir: waveTilingData.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings waveTilingData_1.14.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.6-data-experiment/meat/waveTilingData.Rcheck’
* using R version 3.4.4 (2018-03-15)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘waveTilingData/DESCRIPTION’ ... OK
* this is package ‘waveTilingData’ version ‘1.14.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘waveTilingData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 240.9Mb
  sub-directories of 1Mb or more:
    data  240.8Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... NOTE
  Error in .requirePackage(package) : 
    unable to find required package 'waveTiling'
  Calls: <Anonymous> ... getClass -> getClassDef -> .classEnv -> .requirePackage
  Execution halted
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                           user system elapsed
leafdev                  24.316  0.528  24.860
leafdevBQ                14.140  0.444  14.596
leafdevMapAndFilterTAIR9  6.696  0.084   6.784
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.6-data-experiment/meat/waveTilingData.Rcheck/00check.log’
for details.



Installation output

waveTilingData.Rcheck/00install.out

* installing *source* package ‘waveTilingData’ ...
** data
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (waveTilingData)

Tests output


Example timings

waveTilingData.Rcheck/waveTilingData-Ex.timings

nameusersystemelapsed
leafdev24.316 0.52824.860
leafdevBQ14.140 0.44414.596
leafdevFit0.6560.0320.686
leafdevInfCompare0.6640.0160.682
leafdevMapAndFilterTAIR96.6960.0846.784