This page was generated on 2018-04-12 12:49:28 -0400 (Thu, 12 Apr 2018).
RforProteomics 1.16.0 Laurent Gatto
Snapshot Date: 2018-04-12 07:35:06 -0400 (Thu, 12 Apr 2018) |
URL: https://git.bioconductor.org/packages/RforProteomics |
Branch: RELEASE_3_6 |
Last Commit: 47b6680 |
Last Changed Date: 2017-10-30 11:58:25 -0400 (Mon, 30 Oct 2017) |
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | NotNeeded | [ ERROR ] | skipped | | |
##############################################################################
##############################################################################
###
### Running command:
###
### /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data RforProteomics
###
##############################################################################
##############################################################################
* checking for file ‘RforProteomics/DESCRIPTION’ ... OK
* preparing ‘RforProteomics’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
Loading required package: MSnbase
Loading required package: BiocGenerics
Loading required package: parallel
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:parallel':
clusterApply, clusterApplyLB, clusterCall, clusterEvalQ,
clusterExport, clusterMap, parApply, parCapply, parLapply,
parLapplyLB, parRapply, parSapply, parSapplyLB
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append,
as.data.frame, cbind, colMeans, colSums, colnames, do.call,
duplicated, eval, evalq, get, grep, grepl, intersect,
is.unsorted, lapply, lengths, mapply, match, mget, order, paste,
pmax, pmax.int, pmin, pmin.int, rank, rbind, rowMeans, rowSums,
rownames, sapply, setdiff, sort, table, tapply, union, unique,
unsplit, which, which.max, which.min
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with
'browseVignettes()'. To cite Bioconductor, see
'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: mzR
Loading required package: Rcpp
Loading required package: BiocParallel
Loading required package: ProtGenerics
This is MSnbase version 2.4.2
Visit https://lgatto.github.io/MSnbase/ to get started.
Attaching package: 'MSnbase'
The following object is masked from 'package:stats':
smooth
The following object is masked from 'package:base':
trimws
Warning: replacing previous import 'MSnbase::plot' by 'graphics::plot' when loading 'RforProteomics'
This is the 'RforProteomics' version 1.16.0.
To get started, visit
http://lgatto.github.com/RforProteomics/
or, in R, open package vignettes by typing
RforProteomics() # R/Bioc for proteomics overview
RProtVis() # R/Bioc for proteomics visualisation
For a full list of available documents:
vignette(package='RforProteomics')
Attaching package: 'RforProteomics'
The following object is masked from 'package:stats':
spectrum
Bioconductor version 3.6 (BiocInstaller 1.28.0), ?biocLite for help
Attaching package: 'xtable'
The following object is masked from 'package:RforProteomics':
display
This is MALDIquant version 1.17
Quantitative Analysis of Mass Spectrometry Data
See '?MALDIquant' for more information about this package.
Attaching package: 'MALDIquant'
The following objects are masked from 'package:MSnbase':
estimateNoise, intensity, isEmpty, mz
The following objects are masked from 'package:ProtGenerics':
intensity, mass, mz, mz<-
Loading required package: MLInterfaces
Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: IRanges
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following object is masked from 'package:MALDIquant':
isEmpty
The following object is masked from 'package:base':
expand.grid
Attaching package: 'IRanges'
The following object is masked from 'package:MALDIquant':
trim
Loading required package: XML
Attaching package: 'annotate'
The following object is masked from 'package:mzR':
nChrom
Loading required package: cluster
This is pRoloc version 1.18.0
Visit https://lgatto.github.io/pRoloc/ to get started.
This is pRolocdata version 1.16.0.
Use 'pRolocdata()' to list available data sets.
Loading required package: msmsEDA
Quitting from lines 29-46 (RProtVis.Rmd)
Error: processing vignette 'RProtVis.Rmd' failed with diagnostics:
package or namespace load failed for 'msmsTests' in dyn.load(file, DLLpath = DLLpath, ...):
unable to load shared object '/home/biocbuild/bbs-3.6-bioc/R/library/locfit/libs/locfit.so':
`maximal number of DLLs reached...
Execution halted