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BioC experimental data: CHECK report for MUGAExampleData on malbec1

This page was generated on 2017-08-15 15:11:30 -0400 (Tue, 15 Aug 2017).

Package 204/317HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
MUGAExampleData 0.111.0
Daniel Gatti
Snapshot Date: 2017-08-15 09:00:08 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/MUGAExampleData
Last Changed Rev: 4157 / Revision: 4227
Last Changed Date: 2017-04-24 16:19:55 -0400 (Mon, 24 Apr 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: MUGAExampleData
Version: 0.111.0
Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings MUGAExampleData_0.111.0.tar.gz
StartedAt: 2017-08-15 10:57:41 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 10:58:14 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 32.8 seconds
RetCode: 0
Status:  OK 
CheckDir: MUGAExampleData.Rcheck
Warnings: 0

Command output

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### Running command:
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###   /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings MUGAExampleData_0.111.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.6-data-experiment/meat/MUGAExampleData.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘MUGAExampleData/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MUGAExampleData’ version ‘0.111.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MUGAExampleData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 88.7Mb
  sub-directories of 1Mb or more:
    data  88.5Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.6-data-experiment/meat/MUGAExampleData.Rcheck/00check.log’
for details.


MUGAExampleData.Rcheck/00install.out:

* installing *source* package ‘MUGAExampleData’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (MUGAExampleData)

MUGAExampleData.Rcheck/MUGAExampleData-Ex.timings:

nameusersystemelapsed
FinalReport13.4480.0483.496
FinalReport21.3240.0281.353
MUGAExampleData-package2.8280.0802.908
Samples10.0000.0000.001
Samples20.0040.0000.001
call.rate.batch0.0000.0000.001
geno1.1480.0161.165
model.probs0.5880.1360.725
pheno0.0040.0000.005
x0.0800.0080.088
y0.0960.0000.095