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BioC experimental data: CHECK report for KEGGandMetacoreDzPathwaysGEO on malbec1

This page was generated on 2017-08-15 15:11:30 -0400 (Tue, 15 Aug 2017).

Package 162/317HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
KEGGandMetacoreDzPathwaysGEO 0.111.0
Gaurav Bhatti
Snapshot Date: 2017-08-15 09:00:08 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/KEGGandMetacoreDzPathwaysGEO
Last Changed Rev: 4157 / Revision: 4227
Last Changed Date: 2017-04-24 16:19:55 -0400 (Mon, 24 Apr 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: KEGGandMetacoreDzPathwaysGEO
Version: 0.111.0
Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings KEGGandMetacoreDzPathwaysGEO_0.111.0.tar.gz
StartedAt: 2017-08-15 10:52:18 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 10:52:57 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 39.3 seconds
RetCode: 0
Status:  OK 
CheckDir: KEGGandMetacoreDzPathwaysGEO.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings KEGGandMetacoreDzPathwaysGEO_0.111.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.6-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘KEGGandMetacoreDzPathwaysGEO/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘KEGGandMetacoreDzPathwaysGEO’ version ‘0.111.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘KEGGandMetacoreDzPathwaysGEO’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 98.8Mb
  sub-directories of 1Mb or more:
    data  98.5Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.6-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck/00check.log’
for details.


KEGGandMetacoreDzPathwaysGEO.Rcheck/00install.out:

* installing *source* package ‘KEGGandMetacoreDzPathwaysGEO’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (KEGGandMetacoreDzPathwaysGEO)

KEGGandMetacoreDzPathwaysGEO.Rcheck/KEGGandMetacoreDzPathwaysGEO-Ex.timings:

nameusersystemelapsed
GSE11450.3840.0040.386
GSE119062.9960.0123.008
GSE14924_CD40.2960.0040.301
GSE14924_CD80.2520.0000.254
GSE167590.3320.0040.334
GSE194200.2280.0000.227
GSE201640.0680.0000.070
GSE227800.2160.0000.217
GSE238780.8320.0000.831
GSE24739_G00.4600.0040.464
GSE24739_G10.4440.0080.450
GSE301530.5960.0080.607
GSE326760.7440.0040.749
GSE38666_epithelia0.3160.0040.321
GSE38666_stroma0.2120.0000.215
GSE41830.2360.0080.245
GSE420571.0160.0041.021
GSE73050.7440.0000.742
KEGGandMetacoreDzPathwaysGEO-package0.6040.0240.629