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BioC experimental data: CHECK report for ELMER.data on malbec1

This page was generated on 2017-08-15 15:11:37 -0400 (Tue, 15 Aug 2017).

Package 87/317HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ELMER.data 2.0.2
Tiago Chedraoui Silva
Snapshot Date: 2017-08-15 09:00:08 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/ELMER.data
Last Changed Rev: 4223 / Revision: 4227
Last Changed Date: 2017-08-04 17:23:30 -0400 (Fri, 04 Aug 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: ELMER.data
Version: 2.0.2
Command: /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings ELMER.data_2.0.2.tar.gz
StartedAt: 2017-08-15 10:41:50 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 10:51:34 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 584.7 seconds
RetCode: 0
Status:  OK 
CheckDir: ELMER.data.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.6-bioc/R/bin/R CMD check --no-vignettes --timings ELMER.data_2.0.2.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.6-data-experiment/meat/ELMER.data.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ELMER.data/DESCRIPTION’ ... OK
* this is package ‘ELMER.data’ version ‘2.0.2’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ELMER.data’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 709.6Mb
  sub-directories of 1Mb or more:
    data  709.1Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.6-data-experiment/meat/ELMER.data.Rcheck/00check.log’
for details.


ELMER.data.Rcheck/00install.out:

* installing *source* package ‘ELMER.data’ ...
** R
** data
*** moving datasets to lazyload DB
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ELMER.data)

ELMER.data.Rcheck/ELMER.data-Ex.timings:

nameusersystemelapsed
ELMER.data0.0080.0000.008
EPIC.manifest0.0040.0000.001
EPIC.manifest.hg380.0000.0000.001
Probes.motif.hg19.450K0.0000.0000.001
Probes.motif.hg19.EPIC0.0000.0000.002
Probes.motif.hg38.450K0.0000.0000.001
Probes.motif.hg38.EPIC0.0000.0000.001
data0.0040.0000.001
hm450.manifest0.0000.0000.001
hm450.manifest.hg380.0040.0000.001
mae.promoter0.0000.0000.001