Back to Multiple platform build/check report for BioC 3.6
[A]BCDEFGHIJKLMNOPQRSTUVWXYZ

INSTALL report for a4Base on tokay1

This page was generated on 2018-04-12 13:20:49 -0400 (Thu, 12 Apr 2018).

Package 2/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
a4Base 1.26.0
Tobias Verbeke
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/a4Base
Branch: RELEASE_3_6
Last Commit: 9b8ee4a
Last Changed Date: 2017-10-30 12:39:33 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: a4Base
Version: 1.26.0
Command: rm -rf a4Base.buildbin-libdir && mkdir a4Base.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/a4Base_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=a4Base.buildbin-libdir --merge-multiarch a4Base_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL a4Base_1.26.0.zip && rm a4Base_1.26.0.tar.gz a4Base_1.26.0.zip
StartedAt: 2018-04-11 18:46:01 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 18:47:01 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 60.3 seconds
RetCode: 0
Status:  OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf a4Base.buildbin-libdir && mkdir a4Base.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/a4Base_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=a4Base.buildbin-libdir --merge-multiarch a4Base_1.26.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL a4Base_1.26.0.zip  && rm a4Base_1.26.0.tar.gz a4Base_1.26.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100  344k  100  344k    0     0  8485k      0 --:--:-- --:--:-- --:--:-- 9310k

install for i386

* installing *source* package 'a4Base' ...
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'a4Base'
    finding HTML links ... done
    ExpressionSetWithComputation            html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpyyDBfc/R.INSTALL10d477b1bad/a4Base/man/ExpressionSetWithComputation.Rd:23: missing file link 'ExpressionSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpyyDBfc/R.INSTALL10d477b1bad/a4Base/man/ExpressionSetWithComputation.Rd:24: missing file link 'eSet'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpyyDBfc/R.INSTALL10d477b1bad/a4Base/man/ExpressionSetWithComputation.Rd:25: missing file link 'VersionedBiobase'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpyyDBfc/R.INSTALL10d477b1bad/a4Base/man/ExpressionSetWithComputation.Rd:26: missing file link 'Versioned'
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpyyDBfc/R.INSTALL10d477b1bad/a4Base/man/ExpressionSetWithComputation.Rd:33: missing file link 'ExpressionSet'
    a4palette                               html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpyyDBfc/R.INSTALL10d477b1bad/a4Base/man/a4palette.Rd:27: missing file link 'rainbow'
    addQuantilesColors                      html  
    boxPlot                                 html  
    combineTwoExpressionSet                 html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpyyDBfc/R.INSTALL10d477b1bad/a4Base/man/combineTwoExpressionSet.Rd:22: missing file link 'ExpressionSet'
    computeLogRatio                         html  
    createExpressionSet                     html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpyyDBfc/R.INSTALL10d477b1bad/a4Base/man/createExpressionSet.Rd:30: missing file link 'ExpressionSet'
    filterVarInt                            html  
    heatmap.expressionSet                   html  
    histPvalue                              html  
    histpvalueplotter                       html  
    lassoReg                                html  
    limmaTwoLevels                          html  
    logReg                                  html  
    nlcvTT                                  html  
    plot1gene                               html  
    plotComb2Samples                        html  
    plotCombMultSamples                     html  
    plotCombination2genes                   html  
    plotLogRatio                            html  
    probabilitiesPlot                       html  
    probe2gene                              html  
    profilesPlot                            html  
    propDEgenes-methods                     html  
    propDEgenes                             html  
    propdegenescalculation                  html  
    replicates                              html  
    spectralMap-methods                     html  
    spectralMap                             html  
    tTest                                   html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpyyDBfc/R.INSTALL10d477b1bad/a4Base/man/tTest.Rd:40: missing file link 'rowttests'
    topTable-methods                        html  
    volcanoPlot-methods                     html  
    volcanoPlot                             html  
    volcanoplotter                          html  
** building package indices
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'a4Base' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'a4Base' as a4Base_1.26.0.zip
* DONE (a4Base)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'a4Base' successfully unpacked and MD5 sums checked
In R CMD INSTALL