clusterProfiler 3.6.0
Guangchuang Yu
| Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018) |
| URL: https://git.bioconductor.org/packages/clusterProfiler |
| Branch: RELEASE_3_6 |
| Last Commit: ff15e3d |
| Last Changed Date: 2017-10-30 12:39:33 -0400 (Mon, 30 Oct 2017) |
| malbec1 | Linux (Ubuntu 16.04.1 LTS) / x86_64 | OK | OK | OK | |  |
| tokay1 | Windows Server 2012 R2 Standard / x64 | [ OK ] | OK | WARNINGS | OK | |
| veracruz1 | OS X 10.11.6 El Capitan / x86_64 | OK | OK | OK | OK | |
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### Running command:
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### rm -rf clusterProfiler.buildbin-libdir && mkdir clusterProfiler.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/clusterProfiler_3.6.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=clusterProfiler.buildbin-libdir --merge-multiarch clusterProfiler_3.6.0.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL clusterProfiler_3.6.0.zip && rm clusterProfiler_3.6.0.tar.gz clusterProfiler_3.6.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 3867k 100 3867k 0 0 66.2M 0 --:--:-- --:--:-- --:--:-- 69.9M
install for i386
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'clusterProfiler/site_src/mkdocs_oldsite/docs/../mysoftware/treeio.md' to 'clusterProfiler/site_src/mkdocs_oldsite/docs/treeio.md'
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'clusterProfiler/site_src/mkdocs_oldsite/docs/../mysoftware/meshes.md' to 'clusterProfiler/site_src/mkdocs_oldsite/docs/meshes.md'
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'clusterProfiler/site_src/mkdocs_oldsite/docs/../mysoftware/ChIPseeker.md' to 'clusterProfiler/site_src/mkdocs_oldsite/docs/ChIPseeker.md'
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'clusterProfiler/site_src/mkdocs_oldsite/docs/../mysoftware/clusterProfiler.md' to 'clusterProfiler/site_src/mkdocs_oldsite/docs/clusterProfiler.md'
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'clusterProfiler/site_src/mkdocs_oldsite/docs/../mysoftware/ReactomePA.md' to 'clusterProfiler/site_src/mkdocs_oldsite/docs/ReactomePA.md'
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'clusterProfiler/site_src/mkdocs_oldsite/docs/../mysoftware/ggtree.md' to 'clusterProfiler/site_src/mkdocs_oldsite/docs/ggtree.md'
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'clusterProfiler/site_src/mkdocs_oldsite/docs/../mysoftware/DOSE.md' to 'clusterProfiler/site_src/mkdocs_oldsite/docs/DOSE.md'
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'clusterProfiler/site_src/mkdocs_oldsite/docs/../mysoftware/GOSemSim.md' to 'clusterProfiler/site_src/mkdocs_oldsite/docs/GOSemSim.md'
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'clusterProfiler/site_src/mkdocs_oldsite/docs/../mysoftware/emojifont.md' to 'clusterProfiler/site_src/mkdocs_oldsite/docs/emojifont.md'
* installing *source* package 'clusterProfiler' ...
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'clusterProfiler'
finding HTML links ... done
DataSet html
GSEA html
Gff2GeneTable html
KEGG_path2extid html
bitr html
bitr_kegg html
browseKEGG html
buildGOmap html
clusterProfiler-package html
compareCluster html
compareClusterResult-class html
finding level-2 HTML links ... done
dotplot-methods html
download_KEGG html
dropGO html
enrichDAVID html
enrichGO html
enrichKEGG html
enrichMKEGG html
enricher html
fortify html
getGOLevel html
go2ont html
go2term html
gofilter html
groupGO html
groupGOResult-class html
gseGO html
gseKEGG html
gseMKEGG html
idType html
ko2name html
merge_result html
plot-methods html
plotGOgraph html
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpKAXciy/R.INSTALLca47b0a32d6/clusterProfiler/man/plotGOgraph.Rd:33: missing file link 'showSigOfNodes'
plotting.clusterProfile html
read.gmt html
search_kegg_organism html
simplify-methods html
viewKEGG html
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL
install for x64
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'clusterProfiler/site_src/mkdocs_oldsite/docs/../mysoftware/treeio.md' to 'clusterProfiler/site_src/mkdocs_oldsite/docs/treeio.md'
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'clusterProfiler/site_src/mkdocs_oldsite/docs/../mysoftware/meshes.md' to 'clusterProfiler/site_src/mkdocs_oldsite/docs/meshes.md'
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'clusterProfiler/site_src/mkdocs_oldsite/docs/../mysoftware/ChIPseeker.md' to 'clusterProfiler/site_src/mkdocs_oldsite/docs/ChIPseeker.md'
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'clusterProfiler/site_src/mkdocs_oldsite/docs/../mysoftware/clusterProfiler.md' to 'clusterProfiler/site_src/mkdocs_oldsite/docs/clusterProfiler.md'
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'clusterProfiler/site_src/mkdocs_oldsite/docs/../mysoftware/ReactomePA.md' to 'clusterProfiler/site_src/mkdocs_oldsite/docs/ReactomePA.md'
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'clusterProfiler/site_src/mkdocs_oldsite/docs/../mysoftware/ggtree.md' to 'clusterProfiler/site_src/mkdocs_oldsite/docs/ggtree.md'
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'clusterProfiler/site_src/mkdocs_oldsite/docs/../mysoftware/DOSE.md' to 'clusterProfiler/site_src/mkdocs_oldsite/docs/DOSE.md'
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'clusterProfiler/site_src/mkdocs_oldsite/docs/../mysoftware/GOSemSim.md' to 'clusterProfiler/site_src/mkdocs_oldsite/docs/GOSemSim.md'
Warning in untar2(tarfile, files, list, exdir, restore_times) :
failed to copy 'clusterProfiler/site_src/mkdocs_oldsite/docs/../mysoftware/emojifont.md' to 'clusterProfiler/site_src/mkdocs_oldsite/docs/emojifont.md'
* installing *source* package 'clusterProfiler' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'clusterProfiler' as clusterProfiler_3.6.0.zip
* DONE (clusterProfiler)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'clusterProfiler' successfully unpacked and MD5 sums checked
In R CMD INSTALL