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INSTALL report for biobroom on tokay1

This page was generated on 2018-04-12 13:27:05 -0400 (Thu, 12 Apr 2018).

Package 118/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
biobroom 1.10.1
John D. Storey and Andrew J. Bass
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/biobroom
Branch: RELEASE_3_6
Last Commit: 4c642c5
Last Changed Date: 2018-01-24 08:07:25 -0400 (Wed, 24 Jan 2018)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: biobroom
Version: 1.10.1
Command: rm -rf biobroom.buildbin-libdir && mkdir biobroom.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/biobroom_1.10.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=biobroom.buildbin-libdir --merge-multiarch biobroom_1.10.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL biobroom_1.10.1.zip && rm biobroom_1.10.1.tar.gz biobroom_1.10.1.zip
StartedAt: 2018-04-11 18:22:39 -0400 (Wed, 11 Apr 2018)
EndedAt: 2018-04-11 18:23:38 -0400 (Wed, 11 Apr 2018)
EllapsedTime: 59.6 seconds
RetCode: 0
Status:  OK  

Command output

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### Running command:
###
###   rm -rf biobroom.buildbin-libdir && mkdir biobroom.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/biobroom_1.10.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=biobroom.buildbin-libdir --merge-multiarch biobroom_1.10.1.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL biobroom_1.10.1.zip  && rm biobroom_1.10.1.tar.gz biobroom_1.10.1.zip
###
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install for i386

* installing *source* package 'biobroom' ...
** R
** data
*** moving datasets to lazyload DB
** preparing package for lazy loading
** help
*** installing help indices
  converting help for package 'biobroom'
    finding HTML links ... done
    DESeq2_tidiers                          html  
    ExpressionSet_tidiers                   html  
Rd warning: C:/Users/biocbuild/bbs-3.6-bioc/tmpdir/RtmpQVvs50/R.INSTALL12e062b06293/biobroom/man/ExpressionSet_tidiers.Rd:17: missing file link 'assayDataElement'
    GRanges_tidiers                         html  
    MSnSet_tidiers                          html  
    SummarizedExperiment_tidiers            html  
    biobroom                                html  
    edgeR_tidiers                           html  
    edge_tidiers                            html  
    hammer                                  html  
    limma_tidiers                           html  
    list_tidiers                            html  
    qvalue_tidiers                          html  
    sva_tidiers                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded
In R CMD INSTALL

install for x64

* installing *source* package 'biobroom' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'biobroom' as biobroom_1.10.1.zip
* DONE (biobroom)
In R CMD INSTALL
In R CMD INSTALL
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'biobroom' successfully unpacked and MD5 sums checked
In R CMD INSTALL