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BUILD BIN report for CellNOptR on veracruz1

This page was generated on 2018-04-12 13:35:08 -0400 (Thu, 12 Apr 2018).

Package 196/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CellNOptR 1.24.1
T.Cokelaer
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/CellNOptR
Branch: RELEASE_3_6
Last Commit: a29bc89
Last Changed Date: 2017-11-07 02:30:12 -0400 (Tue, 07 Nov 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: CellNOptR
Version: 1.24.1
Command: rm -rf CellNOptR.buildbin-libdir && mkdir CellNOptR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CellNOptR_1.24.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CellNOptR.buildbin-libdir
StartedAt: 2018-04-12 11:13:16 -0400 (Thu, 12 Apr 2018)
EndedAt: 2018-04-12 11:13:24 -0400 (Thu, 12 Apr 2018)
EllapsedTime: 8.0 seconds
RetCode: 0
Status:  OK 
PackageFile: CellNOptR_1.24.1.tgz
PackageFileSize: 1.248 MiB

Command output

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###
### Running command:
###
###   rm -rf CellNOptR.buildbin-libdir && mkdir CellNOptR.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CellNOptR_1.24.1.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CellNOptR.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=CellNOptR.buildbin-libdir CellNOptR_1.24.1.tar.gz'
>>>>>>> 

* installing *source* package ‘CellNOptR’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include  -I./include  -fPIC  -Wall -g -O2  -c getFit.c -o getFit.o
getFit.c:41:6: warning: unused variable 'selection' [-Wunused-variable]
        int selection[40];
            ^
getFit.c:42:6: warning: unused variable 'selCounter' [-Wunused-variable]
        int selCounter = 0;
            ^
getFit.c:40:6: warning: unused variable 'or_max' [-Wunused-variable]
        int or_max = 0;
            ^
getFit.c:39:6: warning: unused variable 'curr_max' [-Wunused-variable]
        int curr_max = 0;
            ^
getFit.c:47:6: warning: unused variable 'nReacs' [-Wunused-variable]
        int nReacs = INTEGER(nReacs_in)[0];
            ^
5 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include  -I./include  -fPIC  -Wall -g -O2  -c simulatorT1.c -o simulatorT1.o
simulatorT1.c:285:28: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
            if((track_cond == nCond)) {
                ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
simulatorT1.c:285:28: note: remove extraneous parentheses around the comparison to silence this warning
            if((track_cond == nCond)) {
               ˜           ^       ˜
simulatorT1.c:285:28: note: use '=' to turn this equality comparison into an assignment
            if((track_cond == nCond)) {
                           ^˜
                           =
1 warning generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG   -I/usr/local/include  -I./include  -fPIC  -Wall -g -O2  -c simulatorTN.c -o simulatorTN.o
simulatorTN.c:303:24: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
        if((track_cond == nCond)) {
            ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
simulatorTN.c:303:24: note: remove extraneous parentheses around the comparison to silence this warning
        if((track_cond == nCond)) {
           ˜           ^       ˜
simulatorTN.c:303:24: note: use '=' to turn this equality comparison into an assignment
        if((track_cond == nCond)) {
                       ^˜
                       =
simulatorTN.c:501:28: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
            if((track_cond == nCond)) {
                ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
simulatorTN.c:501:28: note: remove extraneous parentheses around the comparison to silence this warning
            if((track_cond == nCond)) {
               ˜           ^       ˜
simulatorTN.c:501:28: note: use '=' to turn this equality comparison into an assignment
            if((track_cond == nCond)) {
                           ^˜
                           =
2 warnings generated.
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CellNOptR.so getFit.o simulatorT1.o simulatorTN.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.6-bioc/meat/CellNOptR.buildbin-libdir/CellNOptR/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (CellNOptR)


>>>>>>> 
>>>>>>> FIXING LINKS FOR CellNOptR.buildbin-libdir/CellNOptR/libs//CellNOptR.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "CellNOptR.buildbin-libdir/CellNOptR/libs//CellNOptR.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "CellNOptR.buildbin-libdir/CellNOptR/libs//CellNOptR.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "CellNOptR.buildbin-libdir/CellNOptR/libs//CellNOptR.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "CellNOptR.buildbin-libdir/CellNOptR/libs//CellNOptR.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "CellNOptR.buildbin-libdir/CellNOptR/libs//CellNOptR.so"