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BUILD BIN report for BufferedMatrixMethods on veracruz1

This page was generated on 2018-04-12 13:32:17 -0400 (Thu, 12 Apr 2018).

Package 166/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BufferedMatrixMethods 1.42.0
Ben Bolstad
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/BufferedMatrixMethods
Branch: RELEASE_3_6
Last Commit: ff54e83
Last Changed Date: 2017-10-30 12:39:19 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: BufferedMatrixMethods
Version: 1.42.0
Command: rm -rf BufferedMatrixMethods.buildbin-libdir && mkdir BufferedMatrixMethods.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BufferedMatrixMethods_1.42.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BufferedMatrixMethods.buildbin-libdir
StartedAt: 2018-04-12 11:11:45 -0400 (Thu, 12 Apr 2018)
EndedAt: 2018-04-12 11:11:49 -0400 (Thu, 12 Apr 2018)
EllapsedTime: 3.9 seconds
RetCode: 0
Status:  OK 
PackageFile: BufferedMatrixMethods_1.42.0.tgz
PackageFileSize: 40.11 KiB

Command output

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### Running command:
###
###   rm -rf BufferedMatrixMethods.buildbin-libdir && mkdir BufferedMatrixMethods.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BufferedMatrixMethods_1.42.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BufferedMatrixMethods.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BufferedMatrixMethods.buildbin-libdir BufferedMatrixMethods_1.42.0.tar.gz'
>>>>>>> 

* installing *source* package ‘BufferedMatrixMethods’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/BufferedMatrix/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c init_package.c -o init_package.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I"/Library/Frameworks/R.framework/Versions/3.4/Resources/library/BufferedMatrix/include" -I/usr/local/include   -fPIC  -Wall -g -O2  -c preprocess_bm.c -o preprocess_bm.o
preprocess_bm.c:344:7: warning: unused variable 'i' [-Wunused-variable]
  int i,j;
      ^
preprocess_bm.c:378:7: warning: unused variable 'current_mode' [-Wunused-variable]
  int current_mode;
      ^
preprocess_bm.c:593:7: warning: unused variable 'current_mode' [-Wunused-variable]
  int current_mode;
      ^
preprocess_bm.c:1151:7: warning: unused variable 'current_mode' [-Wunused-variable]
  int current_mode;
      ^
preprocess_bm.c:453:12: warning: unused function 'min' [-Wunused-function]
static int min(int x1,int x2){
           ^
5 warnings generated.
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BufferedMatrixMethods.so init_package.o preprocess_bm.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.6-bioc/meat/BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs
** R
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (BufferedMatrixMethods)


>>>>>>> 
>>>>>>> FIXING LINKS FOR BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs//BufferedMatrixMethods.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs//BufferedMatrixMethods.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs//BufferedMatrixMethods.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs//BufferedMatrixMethods.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs//BufferedMatrixMethods.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs//BufferedMatrixMethods.so"