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BUILD BIN report for BioQC on veracruz1

This page was generated on 2018-04-12 13:41:57 -0400 (Thu, 12 Apr 2018).

Package 139/1472HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BioQC 1.6.0
Jitao David Zhang
Snapshot Date: 2018-04-11 16:45:18 -0400 (Wed, 11 Apr 2018)
URL: https://git.bioconductor.org/packages/BioQC
Branch: RELEASE_3_6
Last Commit: 25961ca
Last Changed Date: 2017-10-30 12:41:10 -0400 (Mon, 30 Oct 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: BioQC
Version: 1.6.0
Command: rm -rf BioQC.buildbin-libdir && mkdir BioQC.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BioQC_1.6.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BioQC.buildbin-libdir
StartedAt: 2018-04-12 11:10:33 -0400 (Thu, 12 Apr 2018)
EndedAt: 2018-04-12 11:10:46 -0400 (Thu, 12 Apr 2018)
EllapsedTime: 12.4 seconds
RetCode: 0
Status:  OK 
PackageFile: BioQC_1.6.0.tgz
PackageFileSize: 271.5 KiB

Command output

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###
### Running command:
###
###   rm -rf BioQC.buildbin-libdir && mkdir BioQC.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh BioQC_1.6.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R BioQC.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=BioQC.buildbin-libdir BioQC_1.6.0.tar.gz'
>>>>>>> 

* installing *source* package ‘BioQC’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG `/Library/Frameworks/R.framework/Resources/bin/Rscript -e 'Rcpp:::CxxFlags()'`  -I/usr/local/include   -fPIC  -Wall -g -O2  -c gini.c -o gini.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG `/Library/Frameworks/R.framework/Resources/bin/Rscript -e 'Rcpp:::CxxFlags()'`  -I/usr/local/include   -fPIC  -Wall -g -O2  -c init.c -o init.o
clang++  -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG `/Library/Frameworks/R.framework/Resources/bin/Rscript -e 'Rcpp:::CxxFlags()'`  -I/usr/local/include   -fPIC  -Wall -g -O2  -c read_gmt.cpp -o read_gmt.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG `/Library/Frameworks/R.framework/Resources/bin/Rscript -e 'Rcpp:::CxxFlags()'`  -I/usr/local/include   -fPIC  -Wall -g -O2  -c stat_rank.c -o stat_rank.o
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG `/Library/Frameworks/R.framework/Resources/bin/Rscript -e 'Rcpp:::CxxFlags()'`  -I/usr/local/include   -fPIC  -Wall -g -O2  -c wmw_test.c -o wmw_test.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o BioQC.so gini.o init.o read_gmt.o stat_rank.o wmw_test.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.6-bioc/meat/BioQC.buildbin-libdir/BioQC/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (BioQC)


>>>>>>> 
>>>>>>> FIXING LINKS FOR BioQC.buildbin-libdir/BioQC/libs//BioQC.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgcc_s.1.dylib" "BioQC.buildbin-libdir/BioQC/libs//BioQC.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libgfortran.3.dylib" "BioQC.buildbin-libdir/BioQC/libs//BioQC.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.5.2.dylib" "BioQC.buildbin-libdir/BioQC/libs//BioQC.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libreadline.dylib" "BioQC.buildbin-libdir/BioQC/libs//BioQC.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.4/Resources/lib/libquadmath.0.dylib" "BioQC.buildbin-libdir/BioQC/libs//BioQC.so"