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BioC 3.6: INSTALL report for BiocParallel on tokay1

This page was generated on 2017-08-16 13:30:59 -0400 (Wed, 16 Aug 2017).

Package 121/1410HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
BiocParallel 1.11.6
Bioconductor Package Maintainer
Snapshot Date: 2017-08-15 17:18:21 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BiocParallel
Last Changed Rev: 131747 / Revision: 131943
Last Changed Date: 2017-08-04 10:06:59 -0400 (Fri, 04 Aug 2017)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
tokay1 Windows Server 2012 R2 Standard / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
veracruz1 OS X 10.11.6 El Capitan / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: BiocParallel
Version: 1.11.6
Command: rm -rf BiocParallel.buildbin-libdir && mkdir BiocParallel.buildbin-libdir && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/BiocParallel_1.11.6.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=BiocParallel.buildbin-libdir --merge-multiarch BiocParallel_1.11.6.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL BiocParallel_1.11.6.zip && rm BiocParallel_1.11.6.tar.gz BiocParallel_1.11.6.zip
StartedAt: 2017-08-15 18:09:51 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 18:17:57 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 486.1 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf BiocParallel.buildbin-libdir && mkdir BiocParallel.buildbin-libdir  && C:\cygwin\bin\curl.exe -O https://malbec1.bioconductor.org/BBS/3.6/bioc/src/contrib/BiocParallel_1.11.6.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL --build --library=BiocParallel.buildbin-libdir --merge-multiarch BiocParallel_1.11.6.tar.gz && C:\Users\biocbuild\bbs-3.6-bioc\R\bin\R.exe CMD INSTALL BiocParallel_1.11.6.zip  && rm BiocParallel_1.11.6.tar.gz BiocParallel_1.11.6.zip
###
##############################################################################
##############################################################################


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100 73767  100 73767    0     0   375k      0 --:--:-- --:--:-- --:--:--  383k

install for i386

* installing *source* package 'BiocParallel' ...
** libs
C:/Rtools/mingw_32/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include"   -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c ipcmutex.cpp -o ipcmutex.o
In file included from C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include/boost/uuid/random_generator.hpp:12:0,
                 from C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include/boost/uuid/uuid_generators.hpp:17,
                 from ipcmutex.cpp:1:
C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include/boost/uuid/seed_rng.hpp: In constructor 'boost::uuids::detail::seed_rng::seed_rng()':
C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include/boost/uuid/seed_rng.hpp:92:23: warning: converting to non-pointer type 'boost::detail::winapi::HCRYPTPROV_ {aka long unsigned int}' from NULL [-Wconversion-null]
         , random_(NULL)
                       ^
C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include/boost/uuid/seed_rng.hpp:102:21: warning: converting to non-pointer type 'boost::detail::winapi::HCRYPTPROV_ {aka long unsigned int}' from NULL [-Wconversion-null]
             random_ = NULL;
                     ^
C:/Rtools/mingw_32/bin/g++ -shared -s -static-libgcc -o BiocParallel.dll tmp.def ipcmutex.o -LC:/local323/lib/i386 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/i386 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/BiocParallel.buildbin-libdir/BiocParallel/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'BiocParallel' ...
** libs
C:/Rtools/mingw_64/bin/g++  -std=gnu++11 -I"C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/include" -DNDEBUG  -I"C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include"   -I"C:/local323/include"     -O2 -Wall  -mtune=core2 -c ipcmutex.cpp -o ipcmutex.o
In file included from C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include/boost/uuid/random_generator.hpp:12:0,
                 from C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include/boost/uuid/uuid_generators.hpp:17,
                 from ipcmutex.cpp:1:
C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include/boost/uuid/seed_rng.hpp: In constructor 'boost::uuids::detail::seed_rng::seed_rng()':
C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include/boost/uuid/seed_rng.hpp:92:23: warning: converting to non-pointer type 'boost::detail::winapi::HCRYPTPROV_ {aka long long unsigned int}' from NULL [-Wconversion-null]
         , random_(NULL)
                       ^
C:/Users/biocbuild/bbs-3.6-bioc/R/library/BH/include/boost/uuid/seed_rng.hpp:102:21: warning: converting to non-pointer type 'boost::detail::winapi::HCRYPTPROV_ {aka long long unsigned int}' from NULL [-Wconversion-null]
             random_ = NULL;
                     ^
C:/Rtools/mingw_64/bin/g++ -shared -s -static-libgcc -o BiocParallel.dll tmp.def ipcmutex.o -LC:/local323/lib/x64 -LC:/local323/lib -LC:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/x64 -lR
installing to C:/Users/biocbuild/bbs-3.6-bioc/meat/BiocParallel.buildbin-libdir/BiocParallel/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'BiocParallel' as BiocParallel_1.11.6.zip
* DONE (BiocParallel)
* installing to library 'C:/Users/biocbuild/bbs-3.6-bioc/R/library'
package 'BiocParallel' successfully unpacked and MD5 sums checked