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BioC experimental data: CHECK report for KEGGandMetacoreDzPathwaysGEO on malbec2

This page was generated on 2017-10-18 15:09:42 -0400 (Wed, 18 Oct 2017).

Package 162/314HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
KEGGandMetacoreDzPathwaysGEO 0.110.0
Gaurav Bhatti
Snapshot Date: 2017-10-18 09:00:07 -0400 (Wed, 18 Oct 2017)
URL: https://git.bioconductor.org/packages/KEGGandMetacoreDzPathwaysGEO
Branch: RELEASE_3_5
Last Commit: 66c5be6
Last Changed Date: 2017-08-16 15:13:51 -0400 (Wed, 16 Aug 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: KEGGandMetacoreDzPathwaysGEO
Version: 0.110.0
Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings KEGGandMetacoreDzPathwaysGEO_0.110.0.tar.gz
StartedAt: 2017-10-18 10:53:14 -0400 (Wed, 18 Oct 2017)
EndedAt: 2017-10-18 10:53:54 -0400 (Wed, 18 Oct 2017)
EllapsedTime: 40.7 seconds
RetCode: 0
Status:  OK 
CheckDir: KEGGandMetacoreDzPathwaysGEO.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings KEGGandMetacoreDzPathwaysGEO_0.110.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.5-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck’
* using R version 3.4.2 (2017-09-28)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘KEGGandMetacoreDzPathwaysGEO/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘KEGGandMetacoreDzPathwaysGEO’ version ‘0.110.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘KEGGandMetacoreDzPathwaysGEO’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 98.8Mb
  sub-directories of 1Mb or more:
    data  98.5Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.5-data-experiment/meat/KEGGandMetacoreDzPathwaysGEO.Rcheck/00check.log’
for details.


KEGGandMetacoreDzPathwaysGEO.Rcheck/00install.out:

* installing *source* package ‘KEGGandMetacoreDzPathwaysGEO’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (KEGGandMetacoreDzPathwaysGEO)

KEGGandMetacoreDzPathwaysGEO.Rcheck/KEGGandMetacoreDzPathwaysGEO-Ex.timings:

nameusersystemelapsed
GSE11450.3800.0040.386
GSE119063.0760.0163.091
GSE14924_CD40.2840.0040.286
GSE14924_CD80.2440.0080.253
GSE167590.3160.0040.318
GSE194200.2200.0040.223
GSE201640.0640.0000.066
GSE227800.2040.0000.201
GSE238780.7720.0040.777
GSE24739_G00.440.000.44
GSE24739_G10.4360.0080.446
GSE301530.5640.0000.564
GSE326760.7240.0000.726
GSE38666_epithelia0.3160.0000.318
GSE38666_stroma0.2040.0080.211
GSE41830.2440.0040.248
GSE420570.9560.0040.961
GSE73050.6720.0080.682
KEGGandMetacoreDzPathwaysGEO-package0.9280.0080.940