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BioC experimental data: CHECK report for FANTOM3and4CAGE on malbec2

This page was generated on 2017-10-18 15:09:36 -0400 (Wed, 18 Oct 2017).

Package 94/314HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
FANTOM3and4CAGE 1.12.0
Vanja Haberle
Snapshot Date: 2017-10-18 09:00:07 -0400 (Wed, 18 Oct 2017)
URL: https://git.bioconductor.org/packages/FANTOM3and4CAGE
Branch: RELEASE_3_5
Last Commit: 88f2aca
Last Changed Date: 2017-08-16 14:42:28 -0400 (Wed, 16 Aug 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: FANTOM3and4CAGE
Version: 1.12.0
Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings FANTOM3and4CAGE_1.12.0.tar.gz
StartedAt: 2017-10-18 10:43:29 -0400 (Wed, 18 Oct 2017)
EndedAt: 2017-10-18 10:44:16 -0400 (Wed, 18 Oct 2017)
EllapsedTime: 46.6 seconds
RetCode: 0
Status:  OK 
CheckDir: FANTOM3and4CAGE.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings FANTOM3and4CAGE_1.12.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.5-data-experiment/meat/FANTOM3and4CAGE.Rcheck’
* using R version 3.4.2 (2017-09-28)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘FANTOM3and4CAGE/DESCRIPTION’ ... OK
* this is package ‘FANTOM3and4CAGE’ version ‘1.12.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘FANTOM3and4CAGE’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 34.7Mb
  sub-directories of 1Mb or more:
    data  34.3Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU or elapsed time > 5s
                       user system elapsed
FANTOMtissueCAGEhuman 7.832  0.664   8.502
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/home/biocbuild/bbs-3.5-data-experiment/meat/FANTOM3and4CAGE.Rcheck/00check.log’
for details.


FANTOM3and4CAGE.Rcheck/00install.out:

* installing *source* package ‘FANTOM3and4CAGE’ ...
** data
** inst
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (FANTOM3and4CAGE)

FANTOM3and4CAGE.Rcheck/FANTOM3and4CAGE-Ex.timings:

nameusersystemelapsed
FANTOMhumanSamples0.0160.0000.018
FANTOMmouseSamples0.0040.0000.006
FANTOMtimecourseCAGEhuman3.9920.2764.273
FANTOMtimecourseCAGEmouse0.2720.0120.283
FANTOMtissueCAGEhuman7.8320.6648.502
FANTOMtissueCAGEmouse3.1000.1043.203