Back to the "Build/check report"

BioC experimental data: CHECK report for tweeDEseqCountData on malbec2

This page was generated on 2017-08-15 15:07:49 -0400 (Tue, 15 Aug 2017).

Package 303/316HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
tweeDEseqCountData 1.14.0
Juan R Gonzalez
Snapshot Date: 2017-08-15 09:00:06 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_5/experiment/pkgs/tweeDEseqCountData
Last Changed Rev: 4155 / Revision: 4227
Last Changed Date: 2017-04-24 16:09:26 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: tweeDEseqCountData
Version: 1.14.0
Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings tweeDEseqCountData_1.14.0.tar.gz
StartedAt: 2017-08-15 11:13:15 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 11:13:42 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 27.5 seconds
RetCode: 0
Status:  OK 
CheckDir: tweeDEseqCountData.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings tweeDEseqCountData_1.14.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.5-data-experiment/meat/tweeDEseqCountData.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘tweeDEseqCountData/DESCRIPTION’ ... OK
* this is package ‘tweeDEseqCountData’ version ‘1.14.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘tweeDEseqCountData’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 41.3Mb
  sub-directories of 1Mb or more:
    data  41.2Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Package in Depends field not imported from: ‘Biobase’
  These packages need to be imported from (in the NAMESPACE file)
  for when this namespace is loaded but not attached.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
NB: .First.lib is obsolete and will not be used in R >= 3.0.0
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.5-data-experiment/meat/tweeDEseqCountData.Rcheck/00check.log’
for details.


tweeDEseqCountData.Rcheck/00install.out:

* installing *source* package ‘tweeDEseqCountData’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (tweeDEseqCountData)

tweeDEseqCountData.Rcheck/tweeDEseqCountData-Ex.timings:

nameusersystemelapsed
annotEnsembl630.3600.0120.370
cheung0.3680.0000.367
commonPickrell1Huang0.8960.0200.916
genderGenes0.0000.0000.001
hkGenes0.0040.0000.003
montgomery0.3160.0000.315
pickrell0.3600.0080.367