Back to the "Build/check report"

BioC experimental data: CHECK report for cheung2010 on malbec2

This page was generated on 2017-08-15 15:07:49 -0400 (Tue, 15 Aug 2017).

Package 46/316HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cheung2010 0.14.0
Vince Carey
Snapshot Date: 2017-08-15 09:00:06 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_5/experiment/pkgs/cheung2010
Last Changed Rev: 4155 / Revision: 4227
Last Changed Date: 2017-04-24 16:09:26 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK [ ERROR ]

Summary

Package: cheung2010
Version: 0.14.0
Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings cheung2010_0.14.0.tar.gz
StartedAt: 2017-08-15 10:34:11 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 10:34:36 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 25.2 seconds
RetCode: 1
Status:  ERROR 
CheckDir: cheung2010.Rcheck
Warnings: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD check --no-vignettes --timings cheung2010_0.14.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.5-data-experiment/meat/cheung2010.Rcheck’
* using R version 3.4.1 (2017-06-30)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘cheung2010/DESCRIPTION’ ... OK
* this is package ‘cheung2010’ version ‘0.14.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  vignettes/.build.timestamp
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘cheung2010’ can be installed ... ERROR
Installation failed.
See ‘/home/biocbuild/bbs-3.5-data-experiment/meat/cheung2010.Rcheck/00install.out’ for details.
* DONE

Status: 1 ERROR, 1 NOTE
See
  ‘/home/biocbuild/bbs-3.5-data-experiment/meat/cheung2010.Rcheck/00check.log’
for details.

cheung2010.Rcheck/00install.out:

* installing *source* package ‘cheung2010’ ...
** R
** data
** inst
** preparing package for lazy loading
No methods found in "RSQLite" for requests: dbGetQuery
** help
*** installing help indices
** building package indices
** installing vignettes
Error in vignette_type(Outfile) : 
  Vignette product 'cheungTrans.tex' does not have a known filename extension ('NA')
ERROR: installing vignettes failed
* removing '/home/biocbuild/bbs-3.5-data-experiment/meat/cheung2010.Rcheck/cheung2010'