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BioC 3.5: CHECK report for cellbaseR on tokay2

This page was generated on 2017-10-18 14:27:11 -0400 (Wed, 18 Oct 2017).

Package 182/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cellbaseR 1.0.1
Mohammed OE Abdallah
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/cellbaseR
Branch: RELEASE_3_5
Last Commit: e38e255
Last Changed Date: 2017-10-13 17:42:56 -0400 (Fri, 13 Oct 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  ERROR 
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK [ TIMEOUT ] OK 
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  TIMEOUT  skipped  skipped 

Summary

Package: cellbaseR
Version: 1.0.1
Command: rm -rf cellbaseR.buildbin-libdir cellbaseR.Rcheck && mkdir cellbaseR.buildbin-libdir cellbaseR.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=cellbaseR.buildbin-libdir cellbaseR_1.0.1.tar.gz >cellbaseR.Rcheck\00install.out 2>&1 && cp cellbaseR.Rcheck\00install.out cellbaseR-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=cellbaseR.buildbin-libdir --install="check:cellbaseR-install.out" --force-multiarch --no-vignettes --timings cellbaseR_1.0.1.tar.gz
StartedAt: 2017-10-17 22:35:10 -0400 (Tue, 17 Oct 2017)
EndedAt: 2017-10-17 23:15:10 -0400 (Tue, 17 Oct 2017)
EllapsedTime: 2400.0 seconds
RetCode: None
Status:  TIMEOUT  
CheckDir: cellbaseR.Rcheck
Warnings: NA

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf cellbaseR.buildbin-libdir cellbaseR.Rcheck && mkdir cellbaseR.buildbin-libdir cellbaseR.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=cellbaseR.buildbin-libdir cellbaseR_1.0.1.tar.gz >cellbaseR.Rcheck\00install.out 2>&1 && cp cellbaseR.Rcheck\00install.out cellbaseR-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=cellbaseR.buildbin-libdir --install="check:cellbaseR-install.out" --force-multiarch --no-vignettes --timings cellbaseR_1.0.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/cellbaseR.Rcheck'
* using R version 3.4.2 Patched (2017-10-07 r73498)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'cellbaseR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'cellbaseR' version '1.0.1'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'cellbaseR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ...

cellbaseR.Rcheck/00install.out:


install for i386

* installing *source* package 'cellbaseR' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'cellbaseR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cellbaseR' as cellbaseR_1.0.1.zip
* DONE (cellbaseR)

cellbaseR.Rcheck/examples_i386/cellbaseR-Ex.timings:

nameusersystemelapsed
AnnotateVcf-CellBaseR-method 6.33 1.3652.94
CellBaseParam000
CellBaseR0.200.030.49
createGeneModel0.940.011.54
getCaddScores0.220.000.67
getCellBase-CellBaseR-method0.230.000.71
getCellBaseResourceHelp0.440.000.95
getChromosomeInfo-CellBaseR-method0.190.000.66
getClinical-CellBaseR-method12.39 0.2114.77