Back to the "Multiple platform build/check report" A [B] C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

BioC 3.5: CHECK report for bioassayR on tokay2

This page was generated on 2017-10-18 14:22:56 -0400 (Wed, 18 Oct 2017).

Package 110/1381HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
bioassayR 1.14.0
Tyler Backman
Snapshot Date: 2017-10-17 17:00:52 -0400 (Tue, 17 Oct 2017)
URL: https://git.bioconductor.org/packages/bioassayR
Branch: RELEASE_3_5
Last Commit: ca8ffac
Last Changed Date: 2017-04-24 15:45:44 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  NotNeeded  OK [ OK ] OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: bioassayR
Version: 1.14.0
Command: rm -rf bioassayR.buildbin-libdir bioassayR.Rcheck && mkdir bioassayR.buildbin-libdir bioassayR.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=bioassayR.buildbin-libdir bioassayR_1.14.0.tar.gz >bioassayR.Rcheck\00install.out 2>&1 && cp bioassayR.Rcheck\00install.out bioassayR-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=bioassayR.buildbin-libdir --install="check:bioassayR-install.out" --force-multiarch --no-vignettes --timings bioassayR_1.14.0.tar.gz
StartedAt: 2017-10-17 22:15:42 -0400 (Tue, 17 Oct 2017)
EndedAt: 2017-10-17 22:18:10 -0400 (Tue, 17 Oct 2017)
EllapsedTime: 148.1 seconds
RetCode: 0
Status:  OK  
CheckDir: bioassayR.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf bioassayR.buildbin-libdir bioassayR.Rcheck && mkdir bioassayR.buildbin-libdir bioassayR.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=bioassayR.buildbin-libdir bioassayR_1.14.0.tar.gz >bioassayR.Rcheck\00install.out 2>&1 && cp bioassayR.Rcheck\00install.out bioassayR-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=bioassayR.buildbin-libdir --install="check:bioassayR-install.out" --force-multiarch --no-vignettes --timings bioassayR_1.14.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/bioassayR.Rcheck'
* using R version 3.4.2 Patched (2017-10-07 r73498)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'bioassayR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'bioassayR' version '1.14.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'bioassayR' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
** checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in 'tests' ... OK
* checking tests ...
** running tests for arch 'i386' ...
  Running 'testthat.R'
 OK
** running tests for arch 'x64' ...
  Running 'testthat.R'
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

bioassayR.Rcheck/00install.out:


install for i386

* installing *source* package 'bioassayR' ...
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for 'organism' in package 'bioassayR'
Creating a new generic function for 'organism<-' in package 'bioassayR'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'bioassayR' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'bioassayR' as bioassayR_1.14.0.zip
* DONE (bioassayR)

bioassayR.Rcheck/examples_i386/bioassayR-Ex.timings:

nameusersystemelapsed
BioAssayDB-class000
activeAgainst0.140.000.15
activeTargets0.030.000.03
addBioassayIndex0.010.000.02
addDataSource0.030.000.03
allCids0.020.000.01
allTargets0.020.000.02
assaySetTargets0.140.020.28
bioactivityFingerprint0.290.020.31
bioassay-class0.030.000.04
bioassaySet-class000
connectBioassayDB0.000.010.01
crossReactivityProbability0.330.000.33
disconnectBioassayDB0.020.000.01
dropBioassay0.140.000.16
dropBioassayIndex0.030.000.03
getAssay0.020.000.02
getAssays0.030.000.03
getBioassaySetByCids0.150.000.16
inactiveTargets0.020.000.01
loadBioassay0.170.000.17
loadIdMapping0.020.000.02
newBioassayDB000
parsePubChemBioassay0.010.000.01
perTargetMatrix0.190.000.19
queryBioassayDB0.000.020.02
samplebioassay000
scaleBioassaySet0.030.000.03
screenedAtLeast0.020.000.01
selectiveAgainst0.070.000.08
targetSelectivity0.10.00.1
translateTargetId0.010.000.01
trinarySimilarity0.160.010.17

bioassayR.Rcheck/examples_x64/bioassayR-Ex.timings:

nameusersystemelapsed
BioAssayDB-class000
activeAgainst0.20.00.2
activeTargets0.040.000.04
addBioassayIndex0.000.020.02
addDataSource0.040.000.03
allCids0.010.000.02
allTargets000
assaySetTargets0.130.000.12
bioactivityFingerprint0.170.000.17
bioassay-class0.010.000.02
bioassaySet-class000
connectBioassayDB0.000.020.01
crossReactivityProbability0.250.000.25
disconnectBioassayDB0.020.000.02
dropBioassay0.200.010.25
dropBioassayIndex0.050.000.05
getAssay0.020.000.01
getAssays0.060.000.07
getBioassaySetByCids0.170.000.17
inactiveTargets0.020.000.01
loadBioassay0.200.030.24
loadIdMapping0.010.000.01
newBioassayDB0.020.000.02
parsePubChemBioassay000
perTargetMatrix0.170.000.18
queryBioassayDB0.020.000.01
samplebioassay0.000.010.02
scaleBioassaySet0.030.000.03
screenedAtLeast000
selectiveAgainst0.090.000.09
targetSelectivity0.110.000.11
translateTargetId0.020.000.02
trinarySimilarity0.150.000.15