BioC 3.5: CHECK report for AffyCompatible on tokay2

Package: AffyCompatible

Version: 1.36.0

Command: rm -rf AffyCompatible.buildbin-libdir AffyCompatible.Rcheck && mkdir AffyCompatible.buildbin-libdir AffyCompatible.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=AffyCompatible.buildbin-libdir AffyCompatible_1.36.0.tar.gz >AffyCompatible.Rcheck\00install.out 2>&1 && cp AffyCompatible.Rcheck\00install.out AffyCompatible-install.out && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=AffyCompatible.buildbin-libdir --install="check:AffyCompatible-install.out" --force-multiarch --no-vignettes --timings AffyCompatible_1.36.0.tar.gz

StartedAt: 2017-10-17 21:54:23 -0400 (Tue, 17 Oct 2017)

EndedAt: 2017-10-17 21:57:50 -0400 (Tue, 17 Oct 2017)

EllapsedTime: 206.8 seconds

RetCode: 0

Status:  OK

CheckDir: AffyCompatible.Rcheck

Warnings: 0

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### Running command:
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###   rm -rf AffyCompatible.buildbin-libdir AffyCompatible.Rcheck && mkdir AffyCompatible.buildbin-libdir AffyCompatible.Rcheck && C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD INSTALL --build --merge-multiarch --library=AffyCompatible.buildbin-libdir AffyCompatible_1.36.0.tar.gz >AffyCompatible.Rcheck\00install.out 2>&1 && cp AffyCompatible.Rcheck\00install.out AffyCompatible-install.out  &&  C:\Users\biocbuild\bbs-3.5-bioc\R\bin\R.exe CMD check --library=AffyCompatible.buildbin-libdir --install="check:AffyCompatible-install.out" --force-multiarch --no-vignettes --timings AffyCompatible_1.36.0.tar.gz
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* using log directory 'C:/Users/biocbuild/bbs-3.5-bioc/meat/AffyCompatible.Rcheck'
* using R version 3.4.2 Patched (2017-10-07 r73498)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'AffyCompatible/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'AffyCompatible' version '1.36.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'AffyCompatible' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking R/sysdata.rda ... OK
* checking installed files from 'inst/doc' ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
NetAffxResource-class 7.77   0.28   12.54
** running examples for arch 'x64' ... OK
Examples with CPU or elapsed time > 5s
                      user system elapsed
NetAffxResource-class 8.15   0.17   10.42
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: OK

install for i386

* installing *source* package 'AffyCompatible' ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'AffyCompatible' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'AffyCompatible' as AffyCompatible_1.36.0.zip
* DONE (AffyCompatible)

name	user	system	elapsed
AffyCompatible-class	0	0	0
NetAffxResource-class	7.77	0.28	12.54
readArr	0.20	0.00	0.21
readMage	0.85	0.00	0.84
readNetAffx	0	0	0
readXml	0.04	0.00	0.05
xclass	0.07	0.02	0.07
zzz-ARRCompatibility-class	0	0	0
zzz-DTTCompatibility-class	0.03	0.00	0.04
zzz-NetAffxCompatibility-class	0	0	0

name	user	system	elapsed
AffyCompatible-class	0	0	0
NetAffxResource-class	8.15	0.17	10.42
readArr	0.25	0.02	0.26
readMage	1.11	0.01	1.13
readNetAffx	0	0	0
readXml	0.06	0.00	0.06
xclass	0.16	0.00	0.15
zzz-ARRCompatibility-class	0	0	0
zzz-DTTCompatibility-class	0.06	0.00	0.07
zzz-NetAffxCompatibility-class	0.01	0.00	0.01