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BioC 3.5: INSTALL report for affy on malbec2

This page was generated on 2017-08-16 13:12:09 -0400 (Wed, 16 Aug 2017).

Package 16/1382HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
affy 1.54.0
Rafael A. Irizarry
Snapshot Date: 2017-08-15 17:17:57 -0400 (Tue, 15 Aug 2017)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_5/madman/Rpacks/affy
Last Changed Rev: 129126 / Revision: 131943
Last Changed Date: 2017-04-24 15:25:24 -0400 (Mon, 24 Apr 2017)
malbec2 Linux (Ubuntu 16.04.1 LTS) / x86_64 [ OK ] OK  WARNINGS UNNEEDED, same version exists in internal repository
tokay2 Windows Server 2012 R2 Standard / x64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository
veracruz2 OS X 10.11.6 El Capitan / x86_64  OK  OK  WARNINGS  OK UNNEEDED, same version exists in internal repository

Summary

Package: affy
Version: 1.54.0
Command: /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD INSTALL affy
StartedAt: 2017-08-15 18:02:39 -0400 (Tue, 15 Aug 2017)
EndedAt: 2017-08-15 18:02:47 -0400 (Tue, 15 Aug 2017)
EllapsedTime: 8.0 seconds
RetCode: 0
Status:  OK 

Command output

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###
### Running command:
###
###   /home/biocbuild/bbs-3.5-bioc/R/bin/R CMD INSTALL affy
###
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* installing to library ‘/home/biocbuild/bbs-3.5-bioc/R/library’
* installing *source* package ‘affy’ ...
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
gcc -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -DHAVE_ZLIB=1  -I"/home/biocbuild/bbs-3.5-bioc/R/library/preprocessCore/include" -I/usr/local/include   -fpic  -g -O2  -Wall -c chipbackground.c -o chipbackground.o
gcc -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -DHAVE_ZLIB=1  -I"/home/biocbuild/bbs-3.5-bioc/R/library/preprocessCore/include" -I/usr/local/include   -fpic  -g -O2  -Wall -c getall_locations.c -o getall_locations.o
gcc -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -DHAVE_ZLIB=1  -I"/home/biocbuild/bbs-3.5-bioc/R/library/preprocessCore/include" -I/usr/local/include   -fpic  -g -O2  -Wall -c mas5calls.c -o mas5calls.o
gcc -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -DHAVE_ZLIB=1  -I"/home/biocbuild/bbs-3.5-bioc/R/library/preprocessCore/include" -I/usr/local/include   -fpic  -g -O2  -Wall -c rma2.c -o rma2.o
gcc -I/home/biocbuild/bbs-3.5-bioc/R/include -DNDEBUG -DHAVE_ZLIB=1  -I"/home/biocbuild/bbs-3.5-bioc/R/library/preprocessCore/include" -I/usr/local/include   -fpic  -g -O2  -Wall -c rma_common.c -o rma_common.o
gcc -shared -L/home/biocbuild/bbs-3.5-bioc/R/lib -L/usr/local/lib -o affy.so chipbackground.o getall_locations.o mas5calls.o rma2.o rma_common.o -lz -L/home/biocbuild/bbs-3.5-bioc/R/lib -lR
installing to /home/biocbuild/bbs-3.5-bioc/R/library/affy/libs
** R
** data
** demo
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (affy)