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BioC experimental data: CHECK report for systemPipeRdata on malbec1

This page was generated on 2017-04-15 16:49:45 -0400 (Sat, 15 Apr 2017).

Package 287/310HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
systemPipeRdata 1.4.0
Thomas Girke
Snapshot Date: 2017-04-15 09:20:05 -0400 (Sat, 15 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_4/experiment/pkgs/systemPipeRdata
Last Changed Rev: 3958 / Revision: 4141
Last Changed Date: 2016-10-17 14:47:53 -0400 (Mon, 17 Oct 2016)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  NotNeeded  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: systemPipeRdata
Version: 1.4.0
Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings systemPipeRdata_1.4.0.tar.gz
StartedAt: 2017-04-15 11:22:07 -0400 (Sat, 15 Apr 2017)
EndedAt: 2017-04-15 11:22:37 -0400 (Sat, 15 Apr 2017)
EllapsedTime: 30.0 seconds
RetCode: 0
Status:  OK 
CheckDir: systemPipeRdata.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings systemPipeRdata_1.4.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.4-data-experiment/meat/systemPipeRdata.Rcheck’
* using R version 3.3.3 (2017-03-06)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘systemPipeRdata/DESCRIPTION’ ... OK
* this is package ‘systemPipeRdata’ version ‘1.4.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... NOTE
Found the following hidden files and directories:
  inst/extdata/param/.BatchJobs.R
These were most likely included in error. See section ‘Package
structure’ in the ‘Writing R Extensions’ manual.
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘systemPipeRdata’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 320.0Mb
  sub-directories of 1Mb or more:
    extdata  319.8Mb
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in Makefiles ... OK
* checking for GNU extensions in Makefiles ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.4-data-experiment/meat/systemPipeRdata.Rcheck/00check.log’
for details.


systemPipeRdata.Rcheck/00install.out:

* installing *source* package ‘systemPipeRdata’ ...
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (systemPipeRdata)

systemPipeRdata.Rcheck/systemPipeRdata-Ex.timings:

nameusersystemelapsed
genWorkenvir0.0040.0000.004
pathList0.0040.0000.003