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BioC experimental data: CHECK report for KEGGdzPathwaysGEO on malbec1

This page was generated on 2017-04-15 16:49:33 -0400 (Sat, 15 Apr 2017).

Package 164/310HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
KEGGdzPathwaysGEO 1.12.0
Gaurav Bhatti
Snapshot Date: 2017-04-15 09:20:05 -0400 (Sat, 15 Apr 2017)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_4/experiment/pkgs/KEGGdzPathwaysGEO
Last Changed Rev: 3958 / Revision: 4141
Last Changed Date: 2016-10-17 14:47:53 -0400 (Mon, 17 Oct 2016)
malbec1 Linux (Ubuntu 16.04.1 LTS) / x86_64  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: KEGGdzPathwaysGEO
Version: 1.12.0
Command: /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings KEGGdzPathwaysGEO_1.12.0.tar.gz
StartedAt: 2017-04-15 11:01:49 -0400 (Sat, 15 Apr 2017)
EndedAt: 2017-04-15 11:07:01 -0400 (Sat, 15 Apr 2017)
EllapsedTime: 312.0 seconds
RetCode: 0
Status:  OK 
CheckDir: KEGGdzPathwaysGEO.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.4-bioc/R/bin/R CMD check --no-vignettes --timings KEGGdzPathwaysGEO_1.12.0.tar.gz
###
##############################################################################
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* using log directory ‘/home/biocbuild/bbs-3.4-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck’
* using R version 3.3.3 (2017-03-06)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘KEGGdzPathwaysGEO/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘KEGGdzPathwaysGEO’ version ‘1.12.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘KEGGdzPathwaysGEO’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is 300.7Mb
  sub-directories of 1Mb or more:
    data  300.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
  ‘Biobase’ ‘BiocGenerics’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.4-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck/00check.log’
for details.


KEGGdzPathwaysGEO.Rcheck/00install.out:

* installing *source* package ‘KEGGdzPathwaysGEO’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (KEGGdzPathwaysGEO)

KEGGdzPathwaysGEO.Rcheck/KEGGdzPathwaysGEO-Ex.timings:

nameusersystemelapsed
GSE12970.1160.0000.113
GSE147620.1640.0040.170
GSE154710.3640.0040.368
GSE165150.2040.0080.213
GSE188420.4360.0080.445
GSE191880.6840.0160.703
GSE197280.1360.0000.136
GSE201530.1440.0000.145
GSE202910.0800.0000.077
GSE213540.1200.0040.126
GSE34670.1520.0040.157
GSE35850.0440.0000.046
GSE36780.1080.0040.113
GSE41070.1400.0040.144
GSE5281_EC0.1360.0040.141
GSE5281_HIP0.1440.0000.145
GSE5281_VCX0.2080.0040.209
GSE6956AA0.0480.0000.050
GSE6956C0.0480.0000.048
GSE7810.0480.0000.049
GSE86710.3000.0120.310
GSE87620.1360.0000.139
GSE93480.3640.0120.379
GSE94760.1200.0080.130
KEGGdzPathwaysGEO-package0.3640.0120.373