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BioC experimental data: BUILD BIN report for JctSeqData on moscato2

This page was generated on 2016-10-08 19:32:02 -0700 (Sat, 08 Oct 2016).

Package 153/293HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
JctSeqData 1.2.2
Stephen Hartley
Snapshot Date: 2016-10-08 07:15:25 -0700 (Sat, 08 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_3/experiment/pkgs/JctSeqData
Last Changed Rev: 3774 / Revision: 3935
Last Changed Date: 2016-05-15 13:23:24 -0700 (Sun, 15 May 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK [ OK ]

Summary

Package: JctSeqData
Version: 1.2.2
Command: cd JctSeqData.buildbin-libdir/JctSeqData && zip -r ../../JctSeqData_1.2.2.zip . & cd ../..
StartedAt: 2016-10-08 16:16:50 -0700 (Sat, 08 Oct 2016)
EndedAt: 2016-10-08 16:21:40 -0700 (Sat, 08 Oct 2016)
EllapsedTime: 289.7 seconds
RetCode: 0
Status:  OK  
PackageFile: JctSeqData_1.2.2.zip
PackageFileSize: 56.95 MiB

Command output

##############################################################################
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###
### Running command:
###
###   cd JctSeqData.buildbin-libdir/JctSeqData && zip -r ../../JctSeqData_1.2.2.zip . & cd ../..
###
##############################################################################
##############################################################################


Scanning files 
  adding: CITATION (188 bytes security) (deflated 46%)
  adding: data/ (256 bytes security) (stored 0%)
  adding: data/datalist (188 bytes security) (deflated 32%)
  adding: data/Rdata.rdb (188 bytes security) (deflated 3%)
  adding: data/Rdata.rds (188 bytes security) (deflated 1%)
  adding: data/Rdata.rdx (188 bytes security) (stored 0%)
  adding: DESCRIPTION (188 bytes security) (deflated 41%)
  adding: doc/ (256 bytes security) (stored 0%)
  adding: doc/index.html (188 bytes security) (deflated 58%)
  adding: doc/JunctionSeqExampleData.pdf (188 bytes security) (deflated 11%)
  adding: doc/JunctionSeqExampleData.Rnw (188 bytes security) (deflated 69%)
  adding: extdata/ (256 bytes security) (stored 0%)
  adding: extdata/annoFiles/ (256 bytes security) (stored 0%)
  adding: extdata/annoFiles/anno-original.gtf.gz (188 bytes security) (deflated 6%)
  adding: extdata/annoFiles/anno.gtf.gz (188 bytes security) (deflated 6%)
  adding: extdata/annoFiles/chrom.sizes (188 bytes security) (deflated 64%)
  adding: extdata/annoFiles/decoder.bySample.txt (188 bytes security) (deflated 41%)
  adding: extdata/annoFiles/decoder.byUID.txt (188 bytes security) (deflated 68%)
  adding: extdata/annoFiles/DEXSeq.flat.gff.gz (188 bytes security) (deflated 2%)
  adding: extdata/annoFiles/ensid.2.symbol.txt (188 bytes security) (deflated 71%)
  adding: extdata/annoFiles/JunctionSeq.flat.gff.gz (188 bytes security) (deflated 4%)
  adding: extdata/annoFiles/orphanSplices.gff.gz (188 bytes security) (stored 0%)
  adding: extdata/annoFiles/rn6.chrom.sizes (188 bytes security) (deflated 75%)
  adding: extdata/annoFiles/sampleID.list.txt (188 bytes security) (deflated 36%)
  adding: extdata/annoFiles/uniqueID.list.txt (188 bytes security) (deflated 69%)
  adding: extdata/annoFiles/withNovel.forJunctionSeq.gff.gz (188 bytes security) (deflated 4%)
  adding: extdata/cts/ (256 bytes security) (stored 0%)
  adding: extdata/cts/orphanSplices.gff.gz (188 bytes security) (stored 0%)
  adding: extdata/cts/SAMP1/ (256 bytes security) (stored 0%)
  adding: extdata/cts/SAMP1/QC.exonCounts.formatted.for.DEXSeq.txt.gz (188 bytes security) (deflated 1%)
  adding: extdata/cts/SAMP1/QC.geneCounts.formatted.for.DESeq.txt.gz (188 bytes security) (stored 0%)
  adding: extdata/cts/SAMP1/QC.junctionBed.known.bed.gz (188 bytes security) (deflated 0%)
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  adding: extdata/cts/SAMP1/QC.spliceJunctionAndExonCounts.forJunctionSeq.txt.gz (188 bytes security) (deflated 2%)
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  adding: extdata/cts/SAMP1/QC.wiggle.fwd.wig.gz (188 bytes security) (deflated 3%)
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  adding: extdata/cts/SAMP2/ (256 bytes security) (stored 0%)
  adding: extdata/cts/SAMP2/QC.exonCounts.formatted.for.DEXSeq.txt.gz (188 bytes security) (deflated 1%)
  adding: extdata/cts/SAMP2/QC.geneCounts.formatted.for.DESeq.txt.gz (188 bytes security) (stored 0%)
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  adding: extdata/cts/SAMP2/QC.spliceJunctionAndExonCounts.forJunctionSeq.txt.gz (188 bytes security) (deflated 1%)
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  adding: extdata/cts/SAMP3/ (256 bytes security) (stored 0%)
  adding: extdata/cts/SAMP3/QC.exonCounts.formatted.for.DEXSeq.txt.gz (188 bytes security) (deflated 1%)
  adding: extdata/cts/SAMP3/QC.geneCounts.formatted.for.DESeq.txt.gz (188 bytes security) (stored 0%)
  adding: extdata/cts/SAMP3/QC.junctionBed.known.bed.gz (188 bytes security) (deflated 1%)
  adding: extdata/cts/SAMP3/QC.junctionBed.withNovel.bed.gz (188 bytes security) (deflated 0%)
  adding: extdata/cts/SAMP3/QC.spliceJunctionAndExonCounts.forJunctionSeq.txt.gz (188 bytes security) (deflated 2%)
  adding: extdata/cts/SAMP3/QC.spliceJunctionAndExonCounts.withNovel.forJunctionSeq.txt.gz (188 bytes security) (deflated 2%)
  adding: extdata/cts/SAMP3/QC.spliceJunctionCounts.knownSplices.txt.gz (188 bytes security) (deflated 0%)
  adding: extdata/cts/SAMP3/QC.spliceJunctionCounts.novelSplices.txt.gz (188 bytes security) (deflated 0%)
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  adding: extdata/cts/SAMP3/QC.wiggle.fwd.wig.gz (188 bytes security) (deflated 3%)
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  adding: extdata/cts/SAMP4/ (256 bytes security) (stored 0%)
  adding: extdata/cts/SAMP4/QC.exonCounts.formatted.for.DEXSeq.txt.gz (188 bytes security) (deflated 1%)
  adding: extdata/cts/SAMP4/QC.geneCounts.formatted.for.DESeq.txt.gz (188 bytes security) (stored 0%)
  adding: extdata/cts/SAMP4/QC.junctionBed.known.bed.gz (188 bytes security) (deflated 0%)
  adding: extdata/cts/SAMP4/QC.junctionBed.withNovel.bed.gz (188 bytes security) (deflated 0%)
  adding: extdata/cts/SAMP4/QC.spliceJunctionAndExonCounts.forJunctionSeq.txt.gz (188 bytes security) (deflated 2%)
  adding: extdata/cts/SAMP4/QC.spliceJunctionAndExonCounts.withNovel.forJunctionSeq.txt.gz (188 bytes security) (deflated 2%)
  adding: extdata/cts/SAMP4/QC.spliceJunctionCounts.knownSplices.txt.gz (188 bytes security) (deflated 0%)
  adding: extdata/cts/SAMP4/QC.spliceJunctionCounts.novelSplices.txt.gz (188 bytes security) (deflated 0%)
  adding: extdata/cts/SAMP4/QC.spliceJunctionCounts.orphanSplices.txt.gz (188 bytes security) (stored 0%)
  adding: extdata/cts/SAMP4/QC.wiggle.fwd.wig.gz (188 bytes security) (deflated 3%)
  adding: extdata/cts/SAMP4/QC.wiggle.rev.wig.gz (188 bytes security) (deflated 4%)
  adding: extdata/cts/SAMP5/ (256 bytes security) (stored 0%)
  adding: extdata/cts/SAMP5/QC.exonCounts.formatted.for.DEXSeq.txt.gz (188 bytes security) (deflated 1%)
  adding: extdata/cts/SAMP5/QC.geneCounts.formatted.for.DESeq.txt.gz (188 bytes security) (stored 0%)
  adding: extdata/cts/SAMP5/QC.junctionBed.known.bed.gz (188 bytes security) (deflated 0%)
  adding: extdata/cts/SAMP5/QC.junctionBed.withNovel.bed.gz (188 bytes security) (deflated 0%)
  adding: extdata/cts/SAMP5/QC.spliceJunctionAndExonCounts.forJunctionSeq.txt.gz (188 bytes security) (deflated 2%)
  adding: extdata/cts/SAMP5/QC.spliceJunctionAndExonCounts.withNovel.forJunctionSeq.txt.gz (188 bytes security) (deflated 2%)
  adding: extdata/cts/SAMP5/QC.spliceJunctionCounts.knownSplices.txt.gz (188 bytes security) (deflated 0%)
  adding: extdata/cts/SAMP5/QC.spliceJunctionCounts.novelSplices.txt.gz (188 bytes security) (deflated 0%)
  adding: extdata/cts/SAMP5/QC.spliceJunctionCounts.orphanSplices.txt.gz (188 bytes security) (stored 0%)
  adding: extdata/cts/SAMP5/QC.wiggle.fwd.wig.gz (188 bytes security) (deflated 3%)
  adding: extdata/cts/SAMP5/QC.wiggle.rev.wig.gz (188 bytes security) (deflated 4%)
  adding: extdata/cts/SAMP6/ (256 bytes security) (stored 0%)
  adding: extdata/cts/SAMP6/QC.exonCounts.formatted.for.DEXSeq.txt.gz (188 bytes security) (deflated 1%)
  adding: extdata/cts/SAMP6/QC.geneCounts.formatted.for.DESeq.txt.gz (188 bytes security) (stored 0%)
  adding: extdata/cts/SAMP6/QC.junctionBed.known.bed.gz (188 bytes security) (deflated 0%)
  adding: extdata/cts/SAMP6/QC.junctionBed.withNovel.bed.gz (188 bytes security) (deflated 0%)
  adding: extdata/cts/SAMP6/QC.spliceJunctionAndExonCounts.forJunctionSeq.txt.gz (188 bytes security) (deflated 1%)
  adding: extdata/cts/SAMP6/QC.spliceJunctionAndExonCounts.withNovel.forJunctionSeq.txt.gz (188 bytes security) (deflated 1%)
  adding: extdata/cts/SAMP6/QC.spliceJunctionCounts.knownSplices.txt.gz (188 bytes security) (deflated 0%)
  adding: extdata/cts/SAMP6/QC.spliceJunctionCounts.novelSplices.txt.gz (188 bytes security) (deflated 0%)
  adding: extdata/cts/SAMP6/QC.spliceJunctionCounts.orphanSplices.txt.gz (188 bytes security) (stored 0%)
  adding: extdata/cts/SAMP6/QC.wiggle.fwd.wig.gz (188 bytes security) (deflated 2%)
  adding: extdata/cts/SAMP6/QC.wiggle.rev.wig.gz (188 bytes security) (deflated 4%)
  adding: extdata/cts/withNovel.forJunctionSeq.gff.gz (188 bytes security) (deflated 4%)
  adding: extdata/generateRandomTinyGeneList.R (188 bytes security) (deflated 29%)
  adding: extdata/makeFullData.R (188 bytes security) (deflated 63%)
  adding: extdata/makeLinks.bash (188 bytes security) (deflated 85%)
  adding: extdata/makeTinyData.R (188 bytes security) (deflated 63%)
  adding: extdata/prepTinyData.sh (188 bytes security) (deflated 75%)
  adding: extdata/tiny/ (256 bytes security) (stored 0%)
  adding: extdata/tiny/anno.gtf.gz (188 bytes security) (deflated 4%)
  adding: extdata/tiny/JunctionSeq.flat.gff.gz (188 bytes security) (deflated 2%)
  adding: extdata/tiny/SAMP1/ (256 bytes security) (stored 0%)
  adding: extdata/tiny/SAMP1/QC.exonCounts.formatted.for.DEXSeq.txt.gz (188 bytes security) (stored 0%)
  adding: extdata/tiny/SAMP1/QC.geneCounts.formatted.for.DESeq.txt.gz (188 bytes security) (stored 0%)
  adding: extdata/tiny/SAMP1/QC.spliceJunctionAndExonCounts.forJunctionSeq.txt.gz (188 bytes security) (deflated 0%)
  adding: extdata/tiny/SAMP1/QC.spliceJunctionAndExonCounts.withNovel.forJunctionSeq.txt.gz (188 bytes security) (deflated 0%)
  adding: extdata/tiny/SAMP1/QC.spliceJunctionCounts.knownSplices.txt.gz (188 bytes security) (stored 0%)
  adding: extdata/tiny/SAMP2/ (256 bytes security) (stored 0%)
  adding: extdata/tiny/SAMP2/QC.exonCounts.formatted.for.DEXSeq.txt.gz (188 bytes security) (stored 0%)
  adding: extdata/tiny/SAMP2/QC.geneCounts.formatted.for.DESeq.txt.gz (188 bytes security) (stored 0%)
  adding: extdata/tiny/SAMP2/QC.spliceJunctionAndExonCounts.forJunctionSeq.txt.gz (188 bytes security) (deflated 1%)
  adding: extdata/tiny/SAMP2/QC.spliceJunctionAndExonCounts.withNovel.forJunctionSeq.txt.gz (188 bytes security) (deflated 0%)
  adding: extdata/tiny/SAMP2/QC.spliceJunctionCounts.knownSplices.txt.gz (188 bytes security) (stored 0%)
  adding: extdata/tiny/SAMP3/ (256 bytes security) (stored 0%)
  adding: extdata/tiny/SAMP3/QC.exonCounts.formatted.for.DEXSeq.txt.gz (188 bytes security) (stored 0%)
  adding: extdata/tiny/SAMP3/QC.geneCounts.formatted.for.DESeq.txt.gz (188 bytes security) (stored 0%)
  adding: extdata/tiny/SAMP3/QC.spliceJunctionAndExonCounts.forJunctionSeq.txt.gz (188 bytes security) (deflated 0%)
  adding: extdata/tiny/SAMP3/QC.spliceJunctionAndExonCounts.withNovel.forJunctionSeq.txt.gz (188 bytes security) (deflated 1%)
  adding: extdata/tiny/SAMP3/QC.spliceJunctionCounts.knownSplices.txt.gz (188 bytes security) (stored 0%)
  adding: extdata/tiny/SAMP4/ (256 bytes security) (stored 0%)
  adding: extdata/tiny/SAMP4/QC.exonCounts.formatted.for.DEXSeq.txt.gz (188 bytes security) (stored 0%)
  adding: extdata/tiny/SAMP4/QC.geneCounts.formatted.for.DESeq.txt.gz (188 bytes security) (stored 0%)
  adding: extdata/tiny/SAMP4/QC.spliceJunctionAndExonCounts.forJunctionSeq.txt.gz (188 bytes security) (deflated 1%)
  adding: extdata/tiny/SAMP4/QC.spliceJunctionAndExonCounts.withNovel.forJunctionSeq.txt.gz (188 bytes security) (deflated 1%)
  adding: extdata/tiny/SAMP4/QC.spliceJunctionCounts.knownSplices.txt.gz (188 bytes security) (stored 0%)
  adding: extdata/tiny/SAMP5/ (256 bytes security) (stored 0%)
  adding: extdata/tiny/SAMP5/QC.exonCounts.formatted.for.DEXSeq.txt.gz (188 bytes security) (stored 0%)
  adding: extdata/tiny/SAMP5/QC.geneCounts.formatted.for.DESeq.txt.gz (188 bytes security) (stored 0%)
  adding: extdata/tiny/SAMP5/QC.spliceJunctionAndExonCounts.forJunctionSeq.txt.gz (188 bytes security) (deflated 1%)
  adding: extdata/tiny/SAMP5/QC.spliceJunctionAndExonCounts.withNovel.forJunctionSeq.txt.gz (188 bytes security) (deflated 1%)
  adding: extdata/tiny/SAMP5/QC.spliceJunctionCounts.knownSplices.txt.gz (188 bytes security) (stored 0%)
  adding: extdata/tiny/SAMP6/ (256 bytes security) (stored 0%)
  adding: extdata/tiny/SAMP6/QC.exonCounts.formatted.for.DEXSeq.txt.gz (188 bytes security) (stored 0%)
  adding: extdata/tiny/SAMP6/QC.geneCounts.formatted.for.DESeq.txt.gz (188 bytes security) (stored 0%)
  adding: extdata/tiny/SAMP6/QC.spliceJunctionAndExonCounts.forJunctionSeq.txt.gz (188 bytes security) (deflated 0%)
  adding: extdata/tiny/SAMP6/QC.spliceJunctionAndExonCounts.withNovel.forJunctionSeq.txt.gz (188 bytes security) (deflated 0%)
  adding: extdata/tiny/SAMP6/QC.spliceJunctionCounts.knownSplices.txt.gz (188 bytes security) (stored 0%)
  adding: extdata/tiny/withNovel.forJunctionSeq.gff.gz (188 bytes security) (deflated 2%)
  adding: extdata/tinyGeneList.txt (188 bytes security) (deflated 81%)
  adding: help/ (256 bytes security) (stored 0%)
  adding: help/aliases.rds (188 bytes security) (stored 0%)
  adding: help/AnIndex (188 bytes security) (deflated 69%)
  adding: help/JctSeqData.rdb (188 bytes security) (stored 0%)
  adding: help/JctSeqData.rdx (188 bytes security) (stored 0%)
  adding: help/paths.rds (188 bytes security) (stored 0%)
  adding: html/ (256 bytes security) (stored 0%)
  adding: html/00Index.html (188 bytes security) (deflated 64%)
  adding: html/R.css (188 bytes security) (deflated 75%)
  adding: INDEX (188 bytes security) (deflated 23%)
  adding: LICENSE (188 bytes security) (deflated 48%)
  adding: MD5 (188 bytes security) (deflated 67%)
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  adding: Meta/nsInfo.rds (188 bytes security) (stored 0%)
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  adding: Meta/vignette.rds (188 bytes security) (stored 0%)
  adding: NAMESPACE (188 bytes security) (deflated 7%)
  adding: NEWS (188 bytes security) (stored 0%)