affy 1.50.0
Rafael A. Irizarry
| Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/affy | | Last Changed Rev: 117079 / Revision: 122332 | | Last Changed Date: 2016-05-03 14:20:18 -0700 (Tue, 03 May 2016) |
| zin2 | Linux (Ubuntu 14.04.2 LTS) / x86_64 | OK | OK | WARNINGS | |  |
| moscato2 | Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64 | [ OK ] | OK | WARNINGS | OK | |
| oaxaca | Mac OS X Mavericks (10.9.5) / x86_64 | OK | OK | WARNINGS | OK | |
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### Running command:
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### rm -rf affy.buildbin-libdir && mkdir affy.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin2/BBS/3.3/bioc/src/contrib/affy_1.50.0.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL --build --library=affy.buildbin-libdir --merge-multiarch affy_1.50.0.tar.gz && E:\biocbld\bbs-3.3-bioc\R\bin\R.exe CMD INSTALL affy_1.50.0.zip && rm affy_1.50.0.tar.gz affy_1.50.0.zip
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install for i386
* installing *source* package 'affy' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
C:/Rtools/mingw_32/bin/gcc -I"E:/biocbld/bbs-3.3-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -DHAVE_ZLIB -I"E:/biocbld/bbs-3.3-bioc/R/library/preprocessCore/include" -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c chipbackground.c -o chipbackground.o
C:/Rtools/mingw_32/bin/gcc -I"E:/biocbld/bbs-3.3-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -DHAVE_ZLIB -I"E:/biocbld/bbs-3.3-bioc/R/library/preprocessCore/include" -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c getall_locations.c -o getall_locations.o
C:/Rtools/mingw_32/bin/gcc -I"E:/biocbld/bbs-3.3-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -DHAVE_ZLIB -I"E:/biocbld/bbs-3.3-bioc/R/library/preprocessCore/include" -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c mas5calls.c -o mas5calls.o
C:/Rtools/mingw_32/bin/gcc -I"E:/biocbld/bbs-3.3-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -DHAVE_ZLIB -I"E:/biocbld/bbs-3.3-bioc/R/library/preprocessCore/include" -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c rma2.c -o rma2.o
C:/Rtools/mingw_32/bin/gcc -I"E:/biocbld/bbs-3.3-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -DHAVE_ZLIB -I"E:/biocbld/bbs-3.3-bioc/R/library/preprocessCore/include" -I"c:/local323/include" -O3 -Wall -std=gnu99 -mtune=core2 -c rma_common.c -o rma_common.o
C:/Rtools/mingw_32/bin/gcc -shared -s -static-libgcc -o affy.dll tmp.def chipbackground.o getall_locations.o mas5calls.o rma2.o rma_common.o -LE:/biocbld/bbs-3.3-bioc/R/library/zlibbioc/libs/i386 -lzlib1bioc -Lc:/local323/lib/i386 -Lc:/local323/lib -LE:/biocbld/BBS-3˜1.3-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-3.3-bioc/meat/affy.buildbin-libdir/affy/libs/i386
** R
** data
** demo
** inst
** preparing package for lazy loading
Creating a generic function for 'open' from package 'base' in package 'affy'
Creating a generic function for 'close' from package 'base' in package 'affy'
Creating a generic function for 'barplot' from package 'graphics' in package 'affy'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
install for x64
* installing *source* package 'affy' ...
**********************************************
WARNING: this package has a configure script
It probably needs manual configuration
**********************************************
** libs
C:/Rtools/mingw_64/bin/gcc -I"E:/biocbld/bbs-3.3-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -DHAVE_ZLIB -I"E:/biocbld/bbs-3.3-bioc/R/library/preprocessCore/include" -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c chipbackground.c -o chipbackground.o
C:/Rtools/mingw_64/bin/gcc -I"E:/biocbld/bbs-3.3-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -DHAVE_ZLIB -I"E:/biocbld/bbs-3.3-bioc/R/library/preprocessCore/include" -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c getall_locations.c -o getall_locations.o
C:/Rtools/mingw_64/bin/gcc -I"E:/biocbld/bbs-3.3-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -DHAVE_ZLIB -I"E:/biocbld/bbs-3.3-bioc/R/library/preprocessCore/include" -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c mas5calls.c -o mas5calls.o
C:/Rtools/mingw_64/bin/gcc -I"E:/biocbld/bbs-3.3-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -DHAVE_ZLIB -I"E:/biocbld/bbs-3.3-bioc/R/library/preprocessCore/include" -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c rma2.c -o rma2.o
C:/Rtools/mingw_64/bin/gcc -I"E:/biocbld/bbs-3.3-bioc/R/library/zlibbioc/include" -I"E:/biocbld/BBS-3˜1.3-B/R/include" -DNDEBUG -DHAVE_ZLIB -I"E:/biocbld/bbs-3.3-bioc/R/library/preprocessCore/include" -I"c:/local323/include" -O2 -Wall -std=gnu99 -mtune=core2 -c rma_common.c -o rma_common.o
C:/Rtools/mingw_64/bin/gcc -shared -s -static-libgcc -o affy.dll tmp.def chipbackground.o getall_locations.o mas5calls.o rma2.o rma_common.o -LE:/biocbld/bbs-3.3-bioc/R/library/zlibbioc/libs/x64 -lzlib1bioc -Lc:/local323/lib/x64 -Lc:/local323/lib -LE:/biocbld/BBS-3˜1.3-B/R/bin/x64 -lR
installing to E:/biocbld/bbs-3.3-bioc/meat/affy.buildbin-libdir/affy/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'affy' as affy_1.50.0.zip
* DONE (affy)
* installing to library 'E:/biocbld/bbs-3.3-bioc/R/library'
package 'affy' successfully unpacked and MD5 sums checked