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BioC 3.3: BUILD BIN report for CNTools on oaxaca

This page was generated on 2016-10-13 12:56:58 -0700 (Thu, 13 Oct 2016).

Package 216/1210HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CNTools 1.28.0
J. Zhang
Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/CNTools
Last Changed Rev: 117079 / Revision: 122332
Last Changed Date: 2016-05-03 14:20:18 -0700 (Tue, 03 May 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: CNTools
Version: 1.28.0
Command: rm -rf CNTools.buildbin-libdir && mkdir CNTools.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CNTools_1.28.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CNTools.buildbin-libdir
StartedAt: 2016-10-13 07:29:00 -0700 (Thu, 13 Oct 2016)
EndedAt: 2016-10-13 07:29:11 -0700 (Thu, 13 Oct 2016)
EllapsedTime: 10.8 seconds
RetCode: 0
Status:  OK 
PackageFile: CNTools_1.28.0.tgz
PackageFileSize: 950.1 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf CNTools.buildbin-libdir && mkdir CNTools.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh CNTools_1.28.0.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CNTools.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=CNTools.buildbin-libdir CNTools_1.28.0.tar.gz'
>>>>>>> 

* installing *source* package ‘CNTools’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c getratios.c -o getratios.o
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CNTools.so getratios.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.3-bioc/meat/CNTools.buildbin-libdir/CNTools/libs
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for ‘start’ in package ‘CNTools’
Creating a new generic function for ‘end’ in package ‘CNTools’
Creating a generic function for ‘genefilter’ from package ‘genefilter’ in package ‘CNTools’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (CNTools)


>>>>>>> 
>>>>>>> FIXING LINKS FOR CNTools.buildbin-libdir/CNTools/libs//CNTools.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgcc_s.1.dylib" "CNTools.buildbin-libdir/CNTools/libs//CNTools.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgfortran.3.dylib" "CNTools.buildbin-libdir/CNTools/libs//CNTools.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.5.2.dylib" "CNTools.buildbin-libdir/CNTools/libs//CNTools.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.dylib" "CNTools.buildbin-libdir/CNTools/libs//CNTools.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libquadmath.0.dylib" "CNTools.buildbin-libdir/CNTools/libs//CNTools.so"