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BioC 3.3: BUILD BIN report for AneuFinder on oaxaca

This page was generated on 2016-10-13 13:03:04 -0700 (Thu, 13 Oct 2016).

Package 41/1210HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
AneuFinder 1.0.3
Aaron Taudt
Snapshot Date: 2016-10-12 17:20:15 -0700 (Wed, 12 Oct 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_3/madman/Rpacks/AneuFinder
Last Changed Rev: 118048 / Revision: 122332
Last Changed Date: 2016-06-01 05:06:42 -0700 (Wed, 01 Jun 2016)
zin2 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK  OK UNNEEDED, same version exists in internal repository
moscato2 Windows Server 2008 R2 Enterprise SP1 (64-bit) / x64  NotNeeded  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  NotNeeded  OK  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: AneuFinder
Version: 1.0.3
Command: rm -rf AneuFinder.buildbin-libdir && mkdir AneuFinder.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh AneuFinder_1.0.3.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R AneuFinder.buildbin-libdir
StartedAt: 2016-10-13 07:23:14 -0700 (Thu, 13 Oct 2016)
EndedAt: 2016-10-13 07:23:35 -0700 (Thu, 13 Oct 2016)
EllapsedTime: 21.1 seconds
RetCode: 0
Status:  OK 
PackageFile: AneuFinder_1.0.3.tgz
PackageFileSize: 663.9 KiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf AneuFinder.buildbin-libdir && mkdir AneuFinder.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh AneuFinder_1.0.3.tar.gz /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R AneuFinder.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=AneuFinder.buildbin-libdir AneuFinder_1.0.3.tar.gz'
>>>>>>> 

* installing *source* package ‘AneuFinder’ ...
** libs
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c R_interface.cpp -o R_interface.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c densities.cpp -o densities.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c init.cpp -o init.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c loghmm.cpp -o loghmm.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c scalehmm.cpp -o scalehmm.o
clang++ -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include    -fPIC  -Wall -mtune=core2 -g -O2  -c utility.cpp -o utility.o
clang++ -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o AneuFinder.so R_interface.o densities.o init.o loghmm.o scalehmm.o utility.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.3-bioc/meat/AneuFinder.buildbin-libdir/AneuFinder/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (AneuFinder)


>>>>>>> 
>>>>>>> FIXING LINKS FOR AneuFinder.buildbin-libdir/AneuFinder/libs//AneuFinder.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgcc_s.1.dylib" "AneuFinder.buildbin-libdir/AneuFinder/libs//AneuFinder.so"
install_name_tool -change "/usr/local/lib/libgfortran.3.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libgfortran.3.dylib" "AneuFinder.buildbin-libdir/AneuFinder/libs//AneuFinder.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.5.2.dylib" "AneuFinder.buildbin-libdir/AneuFinder/libs//AneuFinder.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libreadline.dylib" "AneuFinder.buildbin-libdir/AneuFinder/libs//AneuFinder.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/3.3/Resources/lib/libquadmath.0.dylib" "AneuFinder.buildbin-libdir/AneuFinder/libs//AneuFinder.so"