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BioC experimental data: CHECK report for geneLenDataBase on zin1

This page was generated on 2016-04-23 10:54:43 -0700 (Sat, 23 Apr 2016).

Package 98/257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
geneLenDataBase 1.6.0
Nadia Davidson
Snapshot Date: 2016-04-20 09:20:20 -0700 (Wed, 20 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_2/experiment/pkgs/geneLenDataBase
Last Changed Rev: 3460 / Revision: 3730
Last Changed Date: 2015-10-13 13:14:23 -0700 (Tue, 13 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK [ WARNINGS ]UNNEEDED, same version exists in internal repository

Summary

Package: geneLenDataBase
Version: 1.6.0
Command: /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings geneLenDataBase_1.6.0.tar.gz
StartedAt: 2016-04-20 11:28:38 -0700 (Wed, 20 Apr 2016)
EndedAt: 2016-04-20 11:33:35 -0700 (Wed, 20 Apr 2016)
EllapsedTime: 296.8 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: geneLenDataBase.Rcheck
Warnings: 1

Command output

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##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings geneLenDataBase_1.6.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.2-data-experiment/meat/geneLenDataBase.Rcheck’
* using R version 3.2.4 Revised (2016-03-16 r70336)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘geneLenDataBase/DESCRIPTION’ ... OK
* this is package ‘geneLenDataBase’ version ‘1.6.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘geneLenDataBase’ can be installed ... [15s/18s] OK
* checking installed package size ... NOTE
  installed size is 100.3Mb
  sub-directories of 1Mb or more:
    data  99.7Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Description field: should contain one or more complete sentences.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
':::' call which should be '::': ‘GenomicFeatures:::supportedUCSCtables’
  See the note in ?`:::` about the use of this operator.
Unexported object imported by a ':::' call: ‘GenomicFeatures:::.UCSC_TXNAME2GENEID_MAPDEFS’
  See the note in ?`:::` about the use of this operator.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'anoCar1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoCar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'anoGam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'apiMel2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'aplCal1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'bosTau4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'braFlo1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeJap1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caePb2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'caeRem3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'calJac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'canFam2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cavPor3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'cb3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ce6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ci2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer5.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'danRer6.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.nscanPasaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dm3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'dp3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droAna2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droEre1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droGri1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droMoj2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droPer1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSec1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droSim1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droVir2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'droYak2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab1.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'equCab2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'felCat3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'fr2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'galGal3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'gasAcu1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg16.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.vegaPseudoGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg17.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.acescan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.knownGeneOld3.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg18.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'hg19.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'loxAfr3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm7.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.sibGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm8.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.acembly.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ccdsGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.exoniphy.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'mm9.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'monDom5.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ornAna1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'oryLat2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'panTro2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'petMar1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'ponAbe2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'priPac1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rheMac2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn3.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.knownGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.sgpGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'rn4.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'sacCer2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'strPur2.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'taeGut1.xenoRefGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.geneid.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig1.nscanGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'tetNig2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro1.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.ensGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.geneSymbol.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.genscan.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

Missing link or links in documentation object 'xenTro2.refGene.LENGTH.Rd':
  ‘downloadLengthFromUCSC’

See section 'Cross-references' in the 'Writing R Extensions' manual.

* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [68s/70s] OK
* checking PDF version of manual ... OK
* DONE

Status: 1 WARNING, 3 NOTEs
See
  ‘/home/biocbuild/bbs-3.2-data-experiment/meat/geneLenDataBase.Rcheck/00check.log’
for details.


geneLenDataBase.Rcheck/00install.out:

* installing *source* package ‘geneLenDataBase’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (geneLenDataBase)

geneLenDataBase.Rcheck/geneLenDataBase-Ex.timings:

nameusersystemelapsed
anoCar1.ensGene.LENGTH0.0680.0040.072
anoCar1.genscan.LENGTH0.0410.0200.061
anoCar1.xenoRefGene.LENGTH1.0090.0041.012
anoGam1.ensGene.LENGTH0.0620.0160.078
anoGam1.geneid.LENGTH0.0560.0080.064
anoGam1.genscan.LENGTH0.0410.0160.057
apiMel1.genscan.LENGTH0.0550.0120.067
apiMel2.ensGene.LENGTH0.0930.0040.097
apiMel2.geneid.LENGTH0.0520.0160.068
apiMel2.genscan.LENGTH0.0360.0120.143
aplCal1.xenoRefGene.LENGTH0.4920.0000.491
bosTau2.geneSymbol.LENGTH0.0400.0200.059
bosTau2.geneid.LENGTH0.5160.0040.520
bosTau2.genscan.LENGTH0.1010.0160.118
bosTau2.refGene.LENGTH0.0580.0120.070
bosTau2.sgpGene.LENGTH0.1250.0040.128
bosTau3.ensGene.LENGTH0.1470.0160.163
bosTau3.geneSymbol.LENGTH0.0510.0080.059
bosTau3.geneid.LENGTH0.1670.0120.179
bosTau3.genscan.LENGTH0.0800.0040.083
bosTau3.refGene.LENGTH0.0400.0120.053
bosTau3.sgpGene.LENGTH0.1080.0120.119
bosTau4.ensGene.LENGTH0.1980.0240.223
bosTau4.geneSymbol.LENGTH0.0390.0160.055
bosTau4.genscan.LENGTH0.1160.0040.120
bosTau4.nscanGene.LENGTH0.0360.0120.049
bosTau4.refGene.LENGTH0.0420.0120.054
braFlo1.xenoRefGene.LENGTH0.5290.0040.532
caeJap1.xenoRefGene.LENGTH0.720.000.72
caePb1.xenoRefGene.LENGTH0.5310.0000.531
caePb2.xenoRefGene.LENGTH0.5280.0040.740
caeRem2.xenoRefGene.LENGTH0.6140.0160.631
caeRem3.xenoRefGene.LENGTH0.3310.0200.352
calJac1.genscan.LENGTH0.0700.0320.102
calJac1.nscanGene.LENGTH0.0990.0040.103
calJac1.xenoRefGene.LENGTH0.8770.0000.878
canFam1.ensGene.LENGTH0.4640.0550.553
canFam1.geneSymbol.LENGTH0.0080.0000.009
canFam1.genscan.LENGTH0.0720.0000.071
canFam1.nscanGene.LENGTH0.0650.0040.069
canFam1.refGene.LENGTH0.0090.0000.008
canFam1.xenoRefGene.LENGTH0.9460.0080.954
canFam2.ensGene.LENGTH0.1040.0040.112
canFam2.geneSymbol.LENGTH0.0080.0000.008
canFam2.genscan.LENGTH0.0550.0080.063
canFam2.nscanGene.LENGTH0.0670.0040.070
canFam2.refGene.LENGTH0.0090.0000.010
canFam2.xenoRefGene.LENGTH0.7170.0000.716
cavPor3.ensGene.LENGTH0.1490.0200.400
cavPor3.genscan.LENGTH0.0990.0000.099
cavPor3.nscanGene.LENGTH0.0690.0040.074
cavPor3.xenoRefGene.LENGTH0.8810.0040.883
cb1.xenoRefGene.LENGTH0.7350.0040.738
cb3.xenoRefGene.LENGTH0.3920.0000.391
ce2.geneSymbol.LENGTH0.0770.0280.105
ce2.geneid.LENGTH0.0660.0000.066
ce2.refGene.LENGTH0.0720.0400.113
ce4.geneSymbol.LENGTH0.0950.0200.114
ce4.refGene.LENGTH0.0760.0280.109
ce4.xenoRefGene.LENGTH0.1400.0000.145
ce6.ensGene.LENGTH0.1130.0040.117
ce6.geneSymbol.LENGTH0.0820.0320.114
ce6.refGene.LENGTH0.0980.0120.110
ce6.xenoRefGene.LENGTH0.0910.0000.091
ci1.geneSymbol.LENGTH0.0090.0000.008
ci1.refGene.LENGTH0.0040.0040.008
ci1.xenoRefGene.LENGTH0.2060.0000.207
ci2.ensGene.LENGTH0.1290.0040.133
ci2.geneSymbol.LENGTH0.0080.0000.008
ci2.refGene.LENGTH0.0040.0040.008
ci2.xenoRefGene.LENGTH0.3360.0040.340
danRer3.ensGene.LENGTH0.1300.0160.146
danRer3.geneSymbol.LENGTH0.0640.0240.088
danRer3.refGene.LENGTH0.0720.0120.085
danRer4.ensGene.LENGTH0.1820.0000.182
danRer4.geneSymbol.LENGTH0.0610.0200.081
danRer4.genscan.LENGTH0.0630.0040.067
danRer4.nscanGene.LENGTH0.1050.0080.113
danRer4.refGene.LENGTH0.0530.0240.080
danRer5.ensGene.LENGTH0.2230.0000.224
danRer5.geneSymbol.LENGTH0.0670.0200.087
danRer5.refGene.LENGTH0.0590.0200.079
danRer5.vegaGene.LENGTH0.0610.0160.078
danRer5.vegaPseudoGene.LENGTH0.0050.0000.004
danRer6.ensGene.LENGTH0.1380.0080.146
danRer6.geneSymbol.LENGTH0.0600.0160.076
danRer6.refGene.LENGTH0.0610.0160.077
danRer6.xenoRefGene.LENGTH0.9250.0040.931
dm1.geneSymbol.LENGTH0.0590.0360.095
dm1.genscan.LENGTH0.0330.0040.037
dm1.refGene.LENGTH0.0520.0360.087
dm2.geneSymbol.LENGTH0.0830.0120.095
dm2.geneid.LENGTH0.0380.0240.062
dm2.genscan.LENGTH0.0330.0080.041
dm2.nscanGene.LENGTH0.0570.0000.057
dm2.refGene.LENGTH0.0770.0200.097
dm3.geneSymbol.LENGTH0.0730.0040.078
dm3.nscanPasaGene.LENGTH0.0680.0160.083
dm3.refGene.LENGTH0.0750.0000.075
dp2.genscan.LENGTH0.0330.0160.049
dp2.xenoRefGene.LENGTH0.2380.0040.245
dp3.geneid.LENGTH0.1050.0120.117
dp3.genscan.LENGTH0.0310.0120.043
dp3.xenoRefGene.LENGTH0.1250.0120.136
droAna1.geneid.LENGTH0.0630.0080.071
droAna1.genscan.LENGTH0.0240.0000.024
droAna1.xenoRefGene.LENGTH0.1870.0110.199
droAna2.genscan.LENGTH0.0480.0000.049
droAna2.xenoRefGene.LENGTH0.3080.0080.316
droEre1.genscan.LENGTH0.0310.0150.047
droEre1.xenoRefGene.LENGTH0.3280.0200.355
droGri1.genscan.LENGTH0.0500.0160.067
droGri1.xenoRefGene.LENGTH0.3280.0040.332
droMoj1.geneid.LENGTH0.1220.0120.134
droMoj1.genscan.LENGTH0.0970.0000.097
droMoj1.xenoRefGene.LENGTH0.2300.0200.251
droMoj2.genscan.LENGTH0.0510.0080.331
droMoj2.xenoRefGene.LENGTH0.3990.0080.407
droPer1.genscan.LENGTH0.0380.0200.058
droPer1.xenoRefGene.LENGTH0.2630.0000.262
droSec1.genscan.LENGTH0.0400.0040.044
droSec1.xenoRefGene.LENGTH0.3410.0000.341
droSim1.geneid.LENGTH0.0510.0120.064
droSim1.genscan.LENGTH0.0280.0120.040
droSim1.xenoRefGene.LENGTH0.2580.0000.257
droVir1.geneid.LENGTH0.1550.0040.159
droVir1.genscan.LENGTH0.0540.0080.062
droVir1.xenoRefGene.LENGTH0.2810.0000.281
droVir2.genscan.LENGTH0.0440.0080.052
droVir2.xenoRefGene.LENGTH0.3300.0280.357
droYak1.geneid.LENGTH0.0460.0240.070
droYak1.genscan.LENGTH0.0370.0080.045
droYak1.xenoRefGene.LENGTH0.6390.0000.639
droYak2.genscan.LENGTH0.0310.0120.043
droYak2.xenoRefGene.LENGTH0.2680.0160.284
equCab1.geneSymbol.LENGTH0.0030.0040.007
equCab1.geneid.LENGTH0.0740.0200.094
equCab1.nscanGene.LENGTH0.0490.0120.060
equCab1.refGene.LENGTH0.0040.0000.007
equCab1.sgpGene.LENGTH0.0700.0080.078
equCab2.ensGene.LENGTH0.1230.0040.127
equCab2.geneSymbol.LENGTH0.0100.0000.011
equCab2.nscanGene.LENGTH0.0580.0200.077
equCab2.refGene.LENGTH0.010.000.01
equCab2.xenoRefGene.LENGTH0.6700.0040.673
felCat3.ensGene.LENGTH0.120.000.12
felCat3.geneSymbol.LENGTH0.0040.0040.005
felCat3.geneid.LENGTH1.1840.0281.213
felCat3.genscan.LENGTH0.1270.0080.135
felCat3.nscanGene.LENGTH0.0950.0080.103
felCat3.refGene.LENGTH0.0050.0000.005
felCat3.sgpGene.LENGTH0.1470.0000.147
felCat3.xenoRefGene.LENGTH1.7560.0171.771
fr1.ensGene.LENGTH0.0750.0200.094
fr1.genscan.LENGTH0.0620.0030.067
fr2.ensGene.LENGTH0.1590.0150.175
galGal2.ensGene.LENGTH0.0590.0070.064
galGal2.geneSymbol.LENGTH0.0180.0080.026
galGal2.geneid.LENGTH0.0550.0080.063
galGal2.genscan.LENGTH0.0660.0160.082
galGal2.refGene.LENGTH0.0240.0000.025
galGal2.sgpGene.LENGTH0.0620.0160.077
galGal3.ensGene.LENGTH0.0770.0120.092
galGal3.geneSymbol.LENGTH0.0140.0130.026
galGal3.genscan.LENGTH0.1210.0150.137
galGal3.nscanGene.LENGTH0.0730.0080.080
galGal3.refGene.LENGTH0.0170.0050.024
galGal3.xenoRefGene.LENGTH0.5650.0080.665
gasAcu1.ensGene.LENGTH0.1190.0080.128
gasAcu1.nscanGene.LENGTH0.1480.0320.180
hg16.acembly.LENGTH0.5770.0080.584
hg16.ensGene.LENGTH0.0870.0040.091
hg16.exoniphy.LENGTH0.6400.0000.641
hg16.geneSymbol.LENGTH0.1080.0160.124
hg16.geneid.LENGTH0.0610.0080.069
hg16.genscan.LENGTH0.0660.0000.066
hg16.knownGene.LENGTH0.1080.0200.128
hg16.refGene.LENGTH0.0960.0080.104
hg16.sgpGene.LENGTH0.0590.0000.059
hg17.acembly.LENGTH0.4940.0000.494
hg17.acescan.LENGTH0.0160.0000.015
hg17.ccdsGene.LENGTH0.0230.0120.036
hg17.ensGene.LENGTH0.1240.0160.140
hg17.exoniphy.LENGTH0.5040.0040.508
hg17.geneSymbol.LENGTH0.1120.0000.111
hg17.geneid.LENGTH0.0850.0040.090
hg17.genscan.LENGTH0.0730.0000.072
hg17.knownGene.LENGTH0.1030.0160.119
hg17.refGene.LENGTH0.0930.0040.097
hg17.sgpGene.LENGTH0.0720.0080.080
hg17.vegaGene.LENGTH0.0360.0200.056
hg17.vegaPseudoGene.LENGTH0.0200.0040.024
hg17.xenoRefGene.LENGTH0.2760.0000.275
hg18.acembly.LENGTH0.5170.0000.517
hg18.acescan.LENGTH0.0090.0040.013
hg18.ccdsGene.LENGTH0.0430.0040.047
hg18.ensGene.LENGTH0.6030.0000.603
hg18.exoniphy.LENGTH0.4250.0040.429
hg18.geneSymbol.LENGTH0.0860.0080.094
hg18.geneid.LENGTH0.0820.0040.086
hg18.genscan.LENGTH0.0610.0040.066
hg18.knownGene.LENGTH0.1480.0040.151
hg18.knownGeneOld3.LENGTH0.0700.0120.083
hg18.refGene.LENGTH0.0940.0120.106
hg18.sgpGene.LENGTH0.0790.0080.087
hg18.sibGene.LENGTH0.4030.0040.406
hg18.xenoRefGene.LENGTH0.8460.0120.859
hg19.ccdsGene.LENGTH0.0470.0080.054
hg19.ensGene.LENGTH0.2980.0000.298
hg19.exoniphy.LENGTH0.3860.0040.390
hg19.geneSymbol.LENGTH0.090.020.11
hg19.knownGene.LENGTH0.1640.0240.188
hg19.nscanGene.LENGTH0.2190.0000.219
hg19.refGene.LENGTH0.0910.0120.103
hg19.xenoRefGene.LENGTH0.3760.0000.376
loxAfr3.xenoRefGene.LENGTH0.8680.0120.880
mm7.ensGene.LENGTH0.110.001.19
mm7.geneSymbol.LENGTH0.0840.0040.088
mm7.geneid.LENGTH0.0810.0120.093
mm7.genscan.LENGTH0.4290.0080.437
mm7.knownGene.LENGTH0.0890.0000.089
mm7.refGene.LENGTH0.0870.0000.086
mm7.sgpGene.LENGTH0.0810.0120.094
mm7.xenoRefGene.LENGTH0.3510.0040.359
mm8.ccdsGene.LENGTH0.0260.0080.034
mm8.ensGene.LENGTH0.0920.0040.096
mm8.geneSymbol.LENGTH0.1000.0000.099
mm8.geneid.LENGTH0.0920.0080.100
mm8.genscan.LENGTH0.0650.0040.069
mm8.knownGene.LENGTH0.1070.0000.106
mm8.nscanGene.LENGTH0.0690.0000.070
mm8.refGene.LENGTH0.0870.0080.095
mm8.sgpGene.LENGTH0.0960.0000.097
mm8.sibGene.LENGTH0.3560.0000.356
mm8.xenoRefGene.LENGTH0.4250.0080.433
mm9.acembly.LENGTH0.4650.0040.472
mm9.ccdsGene.LENGTH0.0400.0080.048
mm9.ensGene.LENGTH0.3560.0160.371
mm9.exoniphy.LENGTH0.5430.0080.556
mm9.geneSymbol.LENGTH0.1990.0040.203
mm9.geneid.LENGTH0.1040.0160.120
mm9.genscan.LENGTH0.0770.0030.099
mm9.knownGene.LENGTH0.1200.0280.149
mm9.nscanGene.LENGTH0.4930.0000.493
mm9.refGene.LENGTH0.0920.0040.097
mm9.sgpGene.LENGTH0.1010.0040.104
mm9.xenoRefGene.LENGTH0.4340.0080.441
monDom1.genscan.LENGTH0.0610.0120.074
monDom4.ensGene.LENGTH0.0720.0040.075
monDom4.geneSymbol.LENGTH0.0050.0000.005
monDom4.genscan.LENGTH0.0540.0200.073
monDom4.nscanGene.LENGTH0.0670.0120.080
monDom4.refGene.LENGTH0.0060.0000.005
monDom4.xenoRefGene.LENGTH0.3640.0000.364
monDom5.ensGene.LENGTH0.1080.0040.112
monDom5.geneSymbol.LENGTH0.0050.0000.005
monDom5.genscan.LENGTH0.1330.0000.132
monDom5.nscanGene.LENGTH0.110.000.11
monDom5.refGene.LENGTH0.0010.0040.005
monDom5.xenoRefGene.LENGTH0.6880.0160.711
ornAna1.ensGene.LENGTH0.0980.0270.127
ornAna1.geneSymbol.LENGTH0.0040.0000.004
ornAna1.refGene.LENGTH0.0040.0000.005
ornAna1.xenoRefGene.LENGTH0.6790.0000.678
oryLat2.ensGene.LENGTH0.0970.0000.097
oryLat2.geneSymbol.LENGTH0.0070.0000.007
oryLat2.refGene.LENGTH0.0060.0000.006
oryLat2.xenoRefGene.LENGTH0.7010.0030.723
panTro1.ensGene.LENGTH0.1110.0080.119
panTro1.geneid.LENGTH0.060.020.08
panTro1.genscan.LENGTH0.0700.0000.069
panTro1.xenoRefGene.LENGTH0.1220.0160.138
panTro2.ensGene.LENGTH0.5180.0040.519
panTro2.geneSymbol.LENGTH0.1050.0080.113
panTro2.genscan.LENGTH0.0620.0040.066
panTro2.nscanGene.LENGTH0.0620.0000.063
panTro2.refGene.LENGTH0.0990.0080.108
panTro2.xenoRefGene.LENGTH0.4950.0000.495
petMar1.xenoRefGene.LENGTH0.2840.0080.292
ponAbe2.ensGene.LENGTH0.0900.0120.109
ponAbe2.geneSymbol.LENGTH0.0100.0080.018
ponAbe2.genscan.LENGTH0.0580.0040.062
ponAbe2.nscanGene.LENGTH0.0630.0000.063
ponAbe2.refGene.LENGTH0.0090.0080.017
ponAbe2.xenoRefGene.LENGTH0.7580.0000.757
priPac1.xenoRefGene.LENGTH0.3930.0000.394
rheMac2.ensGene.LENGTH0.1290.0160.145
rheMac2.geneSymbol.LENGTH0.0080.0000.008
rheMac2.geneid.LENGTH0.0890.0000.089
rheMac2.nscanGene.LENGTH0.1320.0040.134
rheMac2.refGene.LENGTH0.0070.0000.008
rheMac2.sgpGene.LENGTH0.0760.0120.088
rheMac2.xenoRefGene.LENGTH0.6860.0040.690
rn3.ensGene.LENGTH0.1040.0040.107
rn3.geneSymbol.LENGTH0.0490.0200.070
rn3.geneid.LENGTH0.0510.0000.051
rn3.genscan.LENGTH0.0670.0040.071
rn3.knownGene.LENGTH0.0180.0160.034
rn3.nscanGene.LENGTH0.0610.0000.060
rn3.refGene.LENGTH0.0710.0000.072
rn3.sgpGene.LENGTH0.4160.0040.419
rn3.xenoRefGene.LENGTH0.5550.0000.554
rn4.ensGene.LENGTH0.1450.0000.144
rn4.geneSymbol.LENGTH0.0480.0240.073
rn4.geneid.LENGTH0.1010.0000.100
rn4.genscan.LENGTH0.0630.0040.067
rn4.knownGene.LENGTH0.0280.0080.035
rn4.nscanGene.LENGTH0.0560.0280.084
rn4.refGene.LENGTH0.0630.0080.071
rn4.sgpGene.LENGTH0.0720.0240.096
rn4.xenoRefGene.LENGTH0.3550.0000.355
sacCer1.ensGene.LENGTH0.0170.0120.029
sacCer2.ensGene.LENGTH0.0200.0080.028
strPur1.geneSymbol.LENGTH0.0060.0000.006
strPur1.genscan.LENGTH0.1370.0040.141
strPur1.refGene.LENGTH0.0070.0000.006
strPur1.xenoRefGene.LENGTH0.5050.0040.509
strPur2.geneSymbol.LENGTH0.0060.0000.005
strPur2.genscan.LENGTH0.0930.0040.098
strPur2.refGene.LENGTH0.0020.0040.005
strPur2.xenoRefGene.LENGTH0.7020.0080.709
supportedGeneIDs0.0080.0040.012
supportedGenomes0.0750.0080.431
taeGut1.ensGene.LENGTH0.0680.0000.068
taeGut1.geneSymbol.LENGTH0.0000.0040.004
taeGut1.genscan.LENGTH0.0370.0120.049
taeGut1.nscanGene.LENGTH0.0260.0160.042
taeGut1.refGene.LENGTH0.0040.0000.004
taeGut1.xenoRefGene.LENGTH0.8010.0000.799
tetNig1.ensGene.LENGTH0.0890.0080.098
tetNig1.geneid.LENGTH0.0650.0080.073
tetNig1.genscan.LENGTH0.0410.0280.069
tetNig1.nscanGene.LENGTH0.0740.0040.077
tetNig2.ensGene.LENGTH0.0720.0040.076
unfactor0.0060.0000.006
xenTro1.genscan.LENGTH0.0870.0000.087
xenTro2.ensGene.LENGTH0.0940.0040.098
xenTro2.geneSymbol.LENGTH0.0370.0080.045
xenTro2.genscan.LENGTH0.0680.0200.088
xenTro2.refGene.LENGTH0.0350.0080.043