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BioC experimental data: CHECK report for KEGGdzPathwaysGEO on zin1

This page was generated on 2016-04-23 10:54:51 -0700 (Sat, 23 Apr 2016).

Package 139/257HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
KEGGdzPathwaysGEO 1.8.0
Gaurav Bhatti
Snapshot Date: 2016-04-20 09:20:20 -0700 (Wed, 20 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioc-data/branches/RELEASE_3_2/experiment/pkgs/KEGGdzPathwaysGEO
Last Changed Rev: 3460 / Revision: 3730
Last Changed Date: 2015-10-13 13:14:23 -0700 (Tue, 13 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  NotNeeded  OK [ OK ]UNNEEDED, same version exists in internal repository

Summary

Package: KEGGdzPathwaysGEO
Version: 1.8.0
Command: /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings KEGGdzPathwaysGEO_1.8.0.tar.gz
StartedAt: 2016-04-20 11:37:40 -0700 (Wed, 20 Apr 2016)
EndedAt: 2016-04-20 11:43:02 -0700 (Wed, 20 Apr 2016)
EllapsedTime: 321.4 seconds
RetCode: 0
Status:  OK 
CheckDir: KEGGdzPathwaysGEO.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.2-bioc/R/bin/R CMD check --no-vignettes --timings KEGGdzPathwaysGEO_1.8.0.tar.gz
###
##############################################################################
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* using log directory ‘/home/biocbuild/bbs-3.2-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck’
* using R version 3.2.4 Revised (2016-03-16 r70336)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘KEGGdzPathwaysGEO/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘KEGGdzPathwaysGEO’ version ‘1.8.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘KEGGdzPathwaysGEO’ can be installed ... [1s/3s] OK
* checking installed package size ... NOTE
  installed size is 300.8Mb
  sub-directories of 1Mb or more:
    data  300.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
  ‘Biobase’ ‘BiocGenerics’
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [5s/5s] OK
* checking PDF version of manual ... OK
* DONE

Status: 2 NOTEs
See
  ‘/home/biocbuild/bbs-3.2-data-experiment/meat/KEGGdzPathwaysGEO.Rcheck/00check.log’
for details.


KEGGdzPathwaysGEO.Rcheck/00install.out:

* installing *source* package ‘KEGGdzPathwaysGEO’ ...
** R
** data
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (KEGGdzPathwaysGEO)

KEGGdzPathwaysGEO.Rcheck/KEGGdzPathwaysGEO-Ex.timings:

nameusersystemelapsed
GSE12970.1160.0030.120
GSE147620.1840.0000.185
GSE154710.3700.0040.373
GSE165150.2070.0000.208
GSE188420.4210.0070.429
GSE191880.6650.0120.677
GSE197280.1390.0080.148
GSE201530.1250.0080.132
GSE202910.0840.0000.085
GSE213540.1320.0000.131
GSE34670.1490.0040.153
GSE35850.0430.0000.044
GSE36780.1070.0000.110
GSE41070.1340.0040.139
GSE5281_EC0.1250.0080.133
GSE5281_HIP0.1360.0040.139
GSE5281_VCX0.170.000.17
GSE6956AA0.0420.0000.045
GSE6956C0.050.000.05
GSE7810.0510.0000.051
GSE86710.2860.0040.290
GSE87620.1390.0000.138
GSE93480.3500.0120.362
GSE94760.1190.0000.120
KEGGdzPathwaysGEO-package0.3480.0080.356