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BioC 3.2: INSTALL report for CellNOptR on oaxaca

This page was generated on 2016-04-23 10:25:35 -0700 (Sat, 23 Apr 2016).

Package 149/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CellNOptR 1.16.0
T.Cokelaer
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/CellNOptR
Last Changed Rev: 109589 / Revision: 116712
Last Changed Date: 2015-10-13 12:36:05 -0700 (Tue, 13 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: CellNOptR
Version: 1.16.0
Command: /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL CellNOptR
StartedAt: 2016-04-22 17:25:56 -0700 (Fri, 22 Apr 2016)
EndedAt: 2016-04-22 17:26:10 -0700 (Fri, 22 Apr 2016)
EllapsedTime: 14.0 seconds
RetCode: 0
Status:  OK 

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Versions/Current/Resources/bin/R CMD INSTALL CellNOptR
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/3.2/Resources/library’
* installing *source* package ‘CellNOptR’ ...
** libs
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -I./include  -fPIC  -Wall -mtune=core2 -g -O2  -c getFit.c -o getFit.o
getFit.c:47:6: warning: unused variable 'nReacs' [-Wunused-variable]
        int nReacs = INTEGER(nReacs_in)[0];
            ^
getFit.c:42:6: warning: unused variable 'selCounter' [-Wunused-variable]
        int selCounter = 0;
            ^
getFit.c:41:6: warning: unused variable 'selection' [-Wunused-variable]
        int selection[40];
            ^
getFit.c:40:6: warning: unused variable 'or_max' [-Wunused-variable]
        int or_max = 0;
            ^
getFit.c:39:6: warning: unused variable 'curr_max' [-Wunused-variable]
        int curr_max = 0;
            ^
5 warnings generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -I./include  -fPIC  -Wall -mtune=core2 -g -O2  -c simulatorT1.c -o simulatorT1.o
simulatorT1.c:285:28: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
            if((track_cond == nCond)) {
                ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
simulatorT1.c:285:28: note: remove extraneous parentheses around the comparison to silence this warning
            if((track_cond == nCond)) {
               ˜           ^       ˜
simulatorT1.c:285:28: note: use '=' to turn this equality comparison into an assignment
            if((track_cond == nCond)) {
                           ^˜
                           =
1 warning generated.
clang -I/Library/Frameworks/R.framework/Resources/include -DNDEBUG  -I/usr/local/include -I/usr/local/include/freetype2 -I/opt/X11/include   -I./include  -fPIC  -Wall -mtune=core2 -g -O2  -c simulatorTN.c -o simulatorTN.o
simulatorTN.c:303:24: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
        if((track_cond == nCond)) {
            ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
simulatorTN.c:303:24: note: remove extraneous parentheses around the comparison to silence this warning
        if((track_cond == nCond)) {
           ˜           ^       ˜
simulatorTN.c:303:24: note: use '=' to turn this equality comparison into an assignment
        if((track_cond == nCond)) {
                       ^˜
                       =
simulatorTN.c:501:28: warning: equality comparison with extraneous parentheses [-Wparentheses-equality]
            if((track_cond == nCond)) {
                ˜˜˜˜˜˜˜˜˜˜˜^˜˜˜˜˜˜˜
simulatorTN.c:501:28: note: remove extraneous parentheses around the comparison to silence this warning
            if((track_cond == nCond)) {
               ˜           ^       ˜
simulatorTN.c:501:28: note: use '=' to turn this equality comparison into an assignment
            if((track_cond == nCond)) {
                           ^˜
                           =
2 warnings generated.
clang -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o CellNOptR.so getFit.o simulatorT1.o simulatorTN.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Library/Frameworks/R.framework/Versions/3.2/Resources/library/CellNOptR/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (CellNOptR)