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BioC 3.2: INSTALL report for CellNOptR on moscato1

This page was generated on 2016-04-23 10:18:10 -0700 (Sat, 23 Apr 2016).

Package 149/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
CellNOptR 1.16.0
T.Cokelaer
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/CellNOptR
Last Changed Rev: 109589 / Revision: 116712
Last Changed Date: 2015-10-13 12:36:05 -0700 (Tue, 13 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: CellNOptR
Version: 1.16.0
Command: rm -rf CellNOptR.buildbin-libdir && mkdir CellNOptR.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.2/bioc/src/contrib/CellNOptR_1.16.0.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --library=CellNOptR.buildbin-libdir --merge-multiarch CellNOptR_1.16.0.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL CellNOptR_1.16.0.zip && rm CellNOptR_1.16.0.tar.gz CellNOptR_1.16.0.zip
StartedAt: 2016-04-22 18:17:59 -0700 (Fri, 22 Apr 2016)
EndedAt: 2016-04-22 18:20:11 -0700 (Fri, 22 Apr 2016)
EllapsedTime: 132.6 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf CellNOptR.buildbin-libdir && mkdir CellNOptR.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.2/bioc/src/contrib/CellNOptR_1.16.0.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --library=CellNOptR.buildbin-libdir --merge-multiarch CellNOptR_1.16.0.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL CellNOptR_1.16.0.zip  && rm CellNOptR_1.16.0.tar.gz CellNOptR_1.16.0.zip
###
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##############################################################################


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100 1414k  100 1414k    0     0  57.8M      0 --:--:-- --:--:-- --:--:-- 69.0M

install for i386

* installing *source* package 'CellNOptR' ...
** libs
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local323/include"  -I./include    -O3 -Wall  -std=gnu99 -mtune=core2 -c getFit.c -o getFit.o
getFit.c: In function 'getFit':
getFit.c:47:6: warning: unused variable 'nReacs' [-Wunused-variable]
getFit.c:42:6: warning: unused variable 'selCounter' [-Wunused-variable]
getFit.c:41:6: warning: unused variable 'selection' [-Wunused-variable]
getFit.c:40:6: warning: unused variable 'or_max' [-Wunused-variable]
getFit.c:39:6: warning: unused variable 'curr_max' [-Wunused-variable]
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local323/include"  -I./include    -O3 -Wall  -std=gnu99 -mtune=core2 -c simulatorT1.c -o simulatorT1.o
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local323/include"  -I./include    -O3 -Wall  -std=gnu99 -mtune=core2 -c simulatorTN.c -o simulatorTN.o
gcc -m32 -shared -s -static-libgcc -o CellNOptR.dll tmp.def getFit.o simulatorT1.o simulatorTN.o -Ld:/RCompile/r-compiling/local/local323/lib/i386 -Ld:/RCompile/r-compiling/local/local323/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.2-bioc/meat/CellNOptR.buildbin-libdir/CellNOptR/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'CellNOptR' ...
** libs
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local323/include"  -I./include    -O2 -Wall  -std=gnu99 -mtune=core2 -c getFit.c -o getFit.o
getFit.c: In function 'getFit':
getFit.c:47:6: warning: unused variable 'nReacs' [-Wunused-variable]
getFit.c:42:6: warning: unused variable 'selCounter' [-Wunused-variable]
getFit.c:41:6: warning: unused variable 'selection' [-Wunused-variable]
getFit.c:40:6: warning: unused variable 'or_max' [-Wunused-variable]
getFit.c:39:6: warning: unused variable 'curr_max' [-Wunused-variable]
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local323/include"  -I./include    -O2 -Wall  -std=gnu99 -mtune=core2 -c simulatorT1.c -o simulatorT1.o
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local323/include"  -I./include    -O2 -Wall  -std=gnu99 -mtune=core2 -c simulatorTN.c -o simulatorTN.o
gcc -m64 -shared -s -static-libgcc -o CellNOptR.dll tmp.def getFit.o simulatorT1.o simulatorTN.o -Ld:/RCompile/r-compiling/local/local323/lib/x64 -Ld:/RCompile/r-compiling/local/local323/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.2-bioc/meat/CellNOptR.buildbin-libdir/CellNOptR/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'CellNOptR' as CellNOptR_1.16.0.zip
* DONE (CellNOptR)
* installing to library 'D:/biocbld/bbs-3.2-bioc/R/library'
package 'CellNOptR' successfully unpacked and MD5 sums checked