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BioC 3.2: INSTALL report for ACME on moscato1

This page was generated on 2016-04-23 10:16:13 -0700 (Sat, 23 Apr 2016).

Package 12/1103HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ACME 2.26.0
Sean Davis
Snapshot Date: 2016-04-22 16:20:12 -0700 (Fri, 22 Apr 2016)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_3_2/madman/Rpacks/ACME
Last Changed Rev: 109589 / Revision: 116712
Last Changed Date: 2015-10-13 12:36:05 -0700 (Tue, 13 Oct 2015)
zin1 Linux (Ubuntu 14.04.2 LTS) / x86_64  OK  OK  OK UNNEEDED, same version exists in internal repository
moscato1 Windows Server 2008 R2 Standard (64-bit) / x64 [ OK ] OK  OK  OK UNNEEDED, same version exists in internal repository
oaxaca Mac OS X Mavericks (10.9.5) / x86_64  OK  OK  OK  OK UNNEEDED, same version exists in internal repository

Summary

Package: ACME
Version: 2.26.0
Command: rm -rf ACME.buildbin-libdir && mkdir ACME.buildbin-libdir && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.2/bioc/src/contrib/ACME_2.26.0.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --library=ACME.buildbin-libdir --merge-multiarch ACME_2.26.0.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL ACME_2.26.0.zip && rm ACME_2.26.0.tar.gz ACME_2.26.0.zip
StartedAt: 2016-04-22 17:44:21 -0700 (Fri, 22 Apr 2016)
EndedAt: 2016-04-22 17:45:44 -0700 (Fri, 22 Apr 2016)
EllapsedTime: 82.6 seconds
RetCode: 0
Status:  OK  

Command output

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###
### Running command:
###
###   rm -rf ACME.buildbin-libdir && mkdir ACME.buildbin-libdir  && C:\cygwin\bin\curl.exe -O http://zin1/BBS/3.2/bioc/src/contrib/ACME_2.26.0.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL --build --library=ACME.buildbin-libdir --merge-multiarch ACME_2.26.0.tar.gz && D:\biocbld\bbs-3.2-bioc\R\bin\R.exe CMD INSTALL ACME_2.26.0.zip  && rm ACME_2.26.0.tar.gz ACME_2.26.0.zip
###
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100 9442k  100 9442k    0     0  95.7M      0 --:--:-- --:--:-- --:--:--  100M

install for i386

* installing *source* package 'ACME' ...
** libs
gcc -m32 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local323/include"     -O3 -Wall  -std=gnu99 -mtune=core2 -c windowChisq.c -o windowChisq.o
windowChisq.c: In function 'windowChisq':
windowChisq.c:58:4: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
windowChisq.c:63:4: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
windowChisq.c:21:11: warning: unused variable 'xa' [-Wunused-variable]
windowChisq.c: At top level:
windowChisq.c:86:5: warning: initialization from incompatible pointer type [enabled by default]
windowChisq.c:86:5: warning: (near initialization for 'callMethods[0].fun') [enabled by default]
gcc -m32 -shared -s -static-libgcc -o ACME.dll tmp.def windowChisq.o -Ld:/RCompile/r-compiling/local/local323/lib/i386 -Ld:/RCompile/r-compiling/local/local323/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/i386 -lR
installing to D:/biocbld/bbs-3.2-bioc/meat/ACME.buildbin-libdir/ACME/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Creating a generic function for 'print' from package 'base' in package 'ACME'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded

install for x64

* installing *source* package 'ACME' ...
** libs
gcc -m64 -I"D:/biocbld/BBS-3˜1.2-B/R/include" -DNDEBUG     -I"d:/RCompile/r-compiling/local/local323/include"     -O2 -Wall  -std=gnu99 -mtune=core2 -c windowChisq.c -o windowChisq.o
windowChisq.c: In function 'windowChisq':
windowChisq.c:58:4: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
windowChisq.c:63:4: warning: suggest parentheses around comparison in operand of '&' [-Wparentheses]
windowChisq.c:21:11: warning: unused variable 'xa' [-Wunused-variable]
windowChisq.c: At top level:
windowChisq.c:86:5: warning: initialization from incompatible pointer type [enabled by default]
windowChisq.c:86:5: warning: (near initialization for 'callMethods[0].fun') [enabled by default]
gcc -m64 -shared -s -static-libgcc -o ACME.dll tmp.def windowChisq.o -Ld:/RCompile/r-compiling/local/local323/lib/x64 -Ld:/RCompile/r-compiling/local/local323/lib -LD:/biocbld/BBS-3˜1.2-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-3.2-bioc/meat/ACME.buildbin-libdir/ACME/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ACME' as ACME_2.26.0.zip
* DONE (ACME)
* installing to library 'D:/biocbld/bbs-3.2-bioc/R/library'
package 'ACME' successfully unpacked and MD5 sums checked