Back to Long Tests report for BioC 3.19

This page was generated on 2024-05-04 23:55:02 -0400 (Sat, 04 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" 4753
palomino3Windows Server 2022 Datacenterx644.4.0 beta (2024-04-15 r86425 ucrt) -- "Puppy Cup" 4486
lconwaymacOS 12.7.1 Montereyx86_644.4.0 beta (2024-04-14 r86421) -- "Puppy Cup" 4519
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 11/33HostnameOS / ArchCHECK
biodbNcbi 1.8.0  (landing page)
Pierrick Roger
Snapshot Date: 2024-05-04 09:55:02 -0400 (Sat, 04 May 2024)
git_url: https://git.bioconductor.org/packages/biodbNcbi
git_branch: RELEASE_3_19
git_last_commit: 1365c98
git_last_commit_date: 2024-04-30 11:41:09 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  ERROR  
palomino3Windows Server 2022 Datacenter / x64  ERROR  
lconwaymacOS 12.7.1 Monterey / x86_64  WARNINGS  

CHECK results for biodbNcbi on lconway


To the developers/maintainers of the biodbNcbi package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbNcbi
Version: 1.8.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.8.0.tar.gz
StartedAt: 2024-05-04 16:00:52 -0400 (Sat, 04 May 2024)
EndedAt: 2024-05-04 16:03:00 -0400 (Sat, 04 May 2024)
EllapsedTime: 128.1 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: biodbNcbi.Rcheck
Warnings: 1

Tests output

biodbNcbi.Rcheck/tests/testthat.Rout


R version 4.4.0 beta (2024-04-14 r86421) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

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Type 'license()' or 'licence()' for distribution details.

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Type 'contributors()' for more information and
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Type 'demo()' for some demos, 'help()' for on-line help, or
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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbNci)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbNcbi")
Loading required package: biodbNcbi
biodb.INFO [2024-05-04 16:01:38.051][biodb::testContext]
biodb.INFO [2024-05-04 16:01:38.054][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-04 16:01:38.055][biodb::testContext] Test context - CCDS long tests
biodb.INFO [2024-05-04 16:01:38.055][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-04 16:01:38.056][biodb::testContext]
biodb.INFO [2024-05-04 16:01:38.061][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-05-04 16:01:38.063][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-05-04 16:01:38.069][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-04 16:01:38.070][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-05-04 16:01:38.071][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-05-04 16:01:38.071][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.072][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.073][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-05-04 16:01:38.088][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-05-04 16:01:38.089][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.091][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-05-04 16:01:38.092][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-05-04 16:01:38.093][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.093][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.094][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.095][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-05-04 16:01:38.096][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-05-04 16:01:38.097][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-05-04 16:01:38.098][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.100][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-05-04 16:01:38.101][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-05-04 16:01:38.101][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-05-04 16:01:38.102][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.104][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-05-04 16:01:38.105][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-05-04 16:01:38.106][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.107][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.108][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-05-04 16:01:38.109][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-05-04 16:01:38.110][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-05-04 16:01:38.111][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.113][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-05-04 16:01:38.114][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-05-04 16:01:38.115][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.117][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-05-04 16:01:38.118][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-05-04 16:01:38.119][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-05-04 16:01:38.119][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.122][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-05-04 16:01:38.122][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-05-04 16:01:38.123][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-05-04 16:01:38.124][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-05-04 16:01:38.125][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-05-04 16:01:38.126][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-05-04 16:01:38.126][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.129][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-05-04 16:01:38.129][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-05-04 16:01:38.130][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.132][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.133][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-05-04 16:01:38.133][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-05-04 16:01:38.134][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.135][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.136][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-05-04 16:01:38.137][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-05-04 16:01:38.138][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.140][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-05-04 16:01:38.141][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-05-04 16:01:38.141][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.142][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.143][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.143][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-05-04 16:01:38.144][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-05-04 16:01:38.145][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.145][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.147][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-05-04 16:01:38.148][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-05-04 16:01:38.164][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-05-04 16:01:38.165][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.167][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-05-04 16:01:38.168][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-05-04 16:01:38.169][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-05-04 16:01:38.170][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.173][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-05-04 16:01:38.204][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:38.216][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-05-04 16:01:38.217][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.217][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:01:38.218][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.219][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:01:38.219][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:38.220][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:01:38.221][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-04 16:01:38.222][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:01:38.222][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.223][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-05-04 16:01:38.224][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:01:38.225][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:38.226][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.226][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-04 16:01:38.226][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-04 16:01:38.226][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-04 16:01:38.226][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-04 16:01:38.226][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-04 16:01:38.227][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-04 16:01:38.228][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:38.229][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:38.229][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:01:38.230][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:38.231][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:38.231][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:01:38.232][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:38.233][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:01:38.234][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:01:38.234][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:38.235][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:38.236][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-05-04 16:01:38.238][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:38.238][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-05-04 16:01:38.239][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.240][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:01:38.241][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.241][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:01:38.242][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:38.243][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:01:38.244][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-04 16:01:38.245][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:01:38.245][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.246][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-05-04 16:01:38.247][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:01:38.248][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:38.249][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.249][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-04 16:01:38.249][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-04 16:01:38.249][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-04 16:01:38.249][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-04 16:01:38.249][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-04 16:01:38.250][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-04 16:01:38.251][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:38.252][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:38.252][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:01:38.253][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:38.254][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:38.255][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:01:38.256][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:38.257][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:01:38.257][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:01:38.258][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:38.259][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:38.260][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-05-04 16:01:38.261][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.262][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-05-04 16:01:38.263][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.264][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:01:38.265][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.265][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:01:38.266][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:38.267][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:01:38.268][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-04 16:01:38.269][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:01:38.270][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:38.270][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-05-04 16:01:38.271][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:01:38.272][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:38.273][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.274][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:38.274][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-04 16:01:38.275][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:38.276][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:38.277][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:01:38.278][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:38.278][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:38.279][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:01:38.280][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:38.280][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:01:38.281][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:01:38.282][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:38.283][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:38.284][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-05-04 16:01:38.285][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.286][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-05-04 16:01:38.287][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.288][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:01:38.288][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.289][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:01:38.290][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:38.290][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:01:38.291][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-04 16:01:38.292][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:01:38.293][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:38.294][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-05-04 16:01:38.294][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:01:38.295][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:38.296][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.297][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:38.297][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-04 16:01:38.298][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:38.299][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:38.300][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:01:38.300][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:38.301][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:38.302][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:01:38.303][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:38.303][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:01:38.304][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:01:38.305][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:38.306][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:38.309][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-04 16:01:38.310][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.311][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.315][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.316][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.318][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.318][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.320][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.322][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.323][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.326][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.327][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.327][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.328][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.329][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.330][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.331][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.332][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.332][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.333][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.335][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.337][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.337][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.338][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.339][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.340][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.340][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.341][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.342][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.343][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.347][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.348][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.349][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.349][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.350][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.350][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.351][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.352][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.352][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.354][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.355][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.357][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.358][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.360][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.360][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.361][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.362][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.364][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.364][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.365][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.366][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.367][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.368][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.371][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.371][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.372][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.373][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.374][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-05-04 16:01:38.378][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-05-04 16:01:38.379][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-05-04 16:01:38.380][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-05-04 16:01:38.381][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-05-04 16:01:38.382][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-04 16:01:38.383][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-05-04 16:01:38.384][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-05-04 16:01:38.385][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-05-04 16:01:38.386][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-04 16:01:38.387][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-04 16:01:38.388][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-05-04 16:01:38.389][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-05-04 16:01:38.391][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-05-04 16:01:38.392][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-04 16:01:38.398][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-04 16:01:38.399][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-05-04 16:01:38.400][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-05-04 16:01:38.401][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-05-04 16:01:38.403][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-05-04 16:01:38.404][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-05-04 16:01:38.405][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-05-04 16:01:38.406][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-05-04 16:01:38.407][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-05-04 16:01:38.408][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-05-04 16:01:38.409][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-05-04 16:01:38.410][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-05-04 16:01:38.411][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-05-04 16:01:38.412][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-05-04 16:01:38.414][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-05-04 16:01:38.415][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-05-04 16:01:38.416][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-05-04 16:01:38.417][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-05-04 16:01:38.418][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-05-04 16:01:38.419][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-05-04 16:01:38.420][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-05-04 16:01:38.421][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-05-04 16:01:38.422][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-05-04 16:01:38.423][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-05-04 16:01:38.424][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-05-04 16:01:38.425][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-05-04 16:01:38.427][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-05-04 16:01:38.428][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-05-04 16:01:38.429][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-05-04 16:01:38.430][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-05-04 16:01:38.431][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-04 16:01:38.432][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-05-04 16:01:38.433][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-05-04 16:01:38.434][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-05-04 16:01:38.435][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-05-04 16:01:38.436][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-05-04 16:01:38.437][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-05-04 16:01:38.438][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-05-04 16:01:38.439][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-05-04 16:01:38.440][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-05-04 16:01:38.441][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-05-04 16:01:38.443][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-05-04 16:01:38.444][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-05-04 16:01:38.445][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-05-04 16:01:38.446][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-05-04 16:01:38.447][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-05-04 16:01:38.448][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-05-04 16:01:38.449][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-05-04 16:01:38.450][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-05-04 16:01:38.451][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-05-04 16:01:38.452][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-05-04 16:01:38.453][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-05-04 16:01:38.454][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-05-04 16:01:38.455][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-05-04 16:01:38.456][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-05-04 16:01:38.457][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-05-04 16:01:38.458][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-05-04 16:01:38.459][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-05-04 16:01:38.460][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-05-04 16:01:38.461][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-05-04 16:01:38.463][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-05-04 16:01:38.464][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-05-04 16:01:38.465][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-05-04 16:01:38.466][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-05-04 16:01:38.467][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-05-04 16:01:38.468][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-05-04 16:01:38.469][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-05-04 16:01:38.470][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-05-04 16:01:38.474][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-05-04 16:01:38.476][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-05-04 16:01:38.478][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-04 16:01:38.479][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.480][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.485][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:38.486][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:38.487][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.488][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:38.496][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:38.496][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.497][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.498][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.499][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:38.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:38.501][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.504][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.504][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:38.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:38.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.507][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.508][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.509][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.509][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:38.510][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:38.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.511][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.512][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.514][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.514][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:38.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:38.516][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.518][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:38.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:38.520][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.523][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:38.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:38.525][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.526][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.526][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.527][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.528][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:38.529][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:38.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.531][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.531][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.533][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.534][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:38.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:38.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.536][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.537][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.538][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.539][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:38.539][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:38.540][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.541][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.541][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.542][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.543][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.543][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:38.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:38.545][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.545][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.546][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.547][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.547][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.548][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:38.549][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:38.550][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.551][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.552][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.552][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:38.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:38.554][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.555][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.556][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.556][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.557][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.558][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:38.558][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:38.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.560][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.562][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:38.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:38.564][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.565][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.566][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.567][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:38.567][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:38.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:38.569][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:38.572][bdb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-05-04 16:01:38.581][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-05-04 16:01:38.582][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.583][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-05-04 16:01:38.584][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.585][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:01:38.585][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.586][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:01:38.587][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.588][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:01:38.588][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-05-04 16:01:38.589][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:01:38.590][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.591][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-05-04 16:01:38.592][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:01:38.592][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-05-04 16:01:38.592][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-05-04 16:01:38.593][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:38.594][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:38.595][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-04 16:01:38.596][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:38.596][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:38.597][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:01:38.598][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:38.599][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:38.599][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:01:38.600][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-05-04 16:01:38.600][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-05-04 16:01:38.601][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:01:38.602][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:01:38.602][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.603][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:38.604][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-05-04 16:01:38.606][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.606][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-05-04 16:01:38.607][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.608][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:01:38.609][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.610][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:01:38.610][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.611][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:01:38.612][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-04 16:01:38.613][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:01:38.614][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.614][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-05-04 16:01:38.615][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:01:38.616][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-05-04 16:01:38.616][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-05-04 16:01:38.616][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-05-04 16:01:38.616][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-05-04 16:01:38.616][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-05-04 16:01:38.616][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-05-04 16:01:38.617][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:38.618][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-04 16:01:38.618][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-04 16:01:38.619][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:38.620][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:38.621][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:01:38.621][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:38.622][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:38.623][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:01:38.624][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-04 16:01:38.624][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-04 16:01:38.625][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:01:38.625][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:01:38.626][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.627][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:38.628][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-05-04 16:01:38.629][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:38.630][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-05-04 16:01:38.653][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.654][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:01:38.655][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.656][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:01:38.656][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.657][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:01:38.658][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-04 16:01:38.659][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:01:38.660][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.660][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-05-04 16:01:38.661][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:01:38.662][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-05-04 16:01:38.662][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:01:38.662][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:01:38.662][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:01:38.662][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:01:38.662][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:01:38.662][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:01:38.662][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:01:38.662][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:01:38.662][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:01:38.662][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-05-04 16:01:38.662][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:01:38.662][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:01:38.662][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:01:38.663][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:38.664][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-04 16:01:38.664][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-04 16:01:38.664][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-04 16:01:38.665][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-05-04 16:01:38.665][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:38.666][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:38.667][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:01:38.668][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:38.668][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:38.669][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:01:38.670][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-04 16:01:38.670][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-04 16:01:38.670][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-05-04 16:01:38.671][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:01:38.671][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:01:38.672][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.673][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-05-04 16:01:38.674][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-05-04 16:01:38.675][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.676][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-05-04 16:01:38.677][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.677][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:01:38.678][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.679][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:01:38.680][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.681][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:01:38.681][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-04 16:01:38.682][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:01:38.683][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.686][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-05-04 16:01:38.687][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:01:38.687][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-05-04 16:01:38.687][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-05-04 16:01:38.688][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:38.689][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:38.690][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-05-04 16:01:38.690][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:38.691][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:38.692][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:01:38.693][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:38.693][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:38.694][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:01:38.695][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-04 16:01:38.695][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-04 16:01:38.695][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-05-04 16:01:38.695][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:01:38.696][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:01:38.697][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:38.698][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-05-04 16:01:38.702][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-05-04 16:01:38.704][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-04 16:01:38.705][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-04 16:01:38.706][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-05-04 16:01:38.707][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-04 16:01:38.708][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-05-04 16:01:38.727][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2024-05-04 16:01:38.727][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2024-05-04 16:01:38.730][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2024-05-04 16:01:38.734][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2024-05-04 16:01:38.737][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-04 16:01:38.738][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-04 16:01:38.739][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2024-05-04 16:01:38.740][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-04 16:01:38.741][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-04 16:01:38.741][bdb$getFactory()$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.INFO [2024-05-04 16:01:38.749][biodb::testThat]
biodb.INFO [2024-05-04 16:01:38.750][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-05-04 16:01:38.751][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:01:38.752][biodb::testThat]
biodb.TRACE[2024-05-04 16:01:38.755][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS12227.1-content.html".
biodb.DEBUG[2024-05-04 16:01:38.756][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-05-04 16:01:38.759][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-05-04 16:01:38.766][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:01:38.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:38.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:38.779][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:38.780][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:38.781][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:38.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:01:38.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:38.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:38.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:38.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:38.811][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:01:38.821][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:38.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:38.822][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:38.852][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:01:38.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:38.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:38.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:38.855][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:38.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:38.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:38.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:38.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:38.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:38.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:38.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:38.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:38.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:38.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:38.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:38.865][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:38.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:38.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:38.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:38.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:38.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:38.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:38.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:38.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:38.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:38.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:38.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:38.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:38.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:38.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:38.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:38.903][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:38.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:38.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:38.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:38.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:38.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:38.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:38.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:38.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:38.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:38.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:38.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:01:38.913][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS12227.1.
biodb.TRACE[2024-05-04 16:01:38.915][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:38.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:38.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:38.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:38.920][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:38.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:38.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:38.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:38.967][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:01:38.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:01:38.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:38.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:38.970][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:01:38.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:01:38.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:38.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:38.974][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-04 16:01:38.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-04 16:01:38.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:38.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:38.977][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-04 16:01:38.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-04 16:01:38.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:38.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:38.992][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:38.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:38.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:38.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.005][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:39.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:39.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.012][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.015][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.026][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.029][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.032][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:39.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:39.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.036][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:39.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:39.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.039][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:39.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:39.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.058][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.059][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.061][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.073][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:01:39.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:39.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.076][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:39.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:39.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.079][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:39.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:39.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.087][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:01:39.088][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:39.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.090][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.091][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:01:39.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:39.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.101][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:39.102][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:39.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.103][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.107][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.108][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.110][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.124][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS43240.1-content.html".
biodb.DEBUG[2024-05-04 16:01:39.152][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-05-04 16:01:39.153][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-05-04 16:01:39.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:01:39.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:39.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:39.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:39.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:39.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:39.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:01:39.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.188][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:01:39.189][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:39.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.191][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.192][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:01:39.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:39.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.199][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:39.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:39.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.202][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:39.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:39.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.208][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:39.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:39.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.217][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:01:39.229][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS43240.1.
biodb.TRACE[2024-05-04 16:01:39.245][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:39.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:39.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.248][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:39.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:39.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.251][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:01:39.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:01:39.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.255][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:01:39.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:01:39.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.258][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-04 16:01:39.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-04 16:01:39.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.261][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-04 16:01:39.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-04 16:01:39.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.265][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.271][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:39.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:39.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.281][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.296][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:39.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:39.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.303][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:39.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:39.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.306][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:39.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:39.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.336][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.337][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.338][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.350][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:01:39.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:39.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.353][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:39.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:39.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.356][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:39.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:39.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.359][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:01:39.360][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:39.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.361][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.362][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:01:39.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:39.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.373][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:39.374][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:39.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.375][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.380][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.381][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.382][ef$get] fields variable is a list.
biodb.INFO [2024-05-04 16:01:39.390][biodb::testThat]
biodb.INFO [2024-05-04 16:01:39.390][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-05-04 16:01:39.391][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:01:39.392][biodb::testThat]
biodb.DEBUG[2024-05-04 16:01:39.394][private$loadEntries] Creating entries from ids [2]: "CCDS12227.1, CCDS43240.1".
biodb.DEBUG[2024-05-04 16:01:39.400][conn$getEntryContent] Get NCBI CCDS entry content(s) for 2 id(s)...
biodb.TRACE[2024-05-04 16:01:39.403][cch$loadFileContent] Trying to load 2 files from cache: [2]: "CCDS12227.1, CCDS43240.1".
biodb.INFO [2024-05-04 16:01:39.404][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704" for "ncbi.ccds-c3bf0257a03be04fd46e362b99907704".
biodb.TRACE[2024-05-04 16:01:39.405][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-05-04 16:01:39.406][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-04 16:01:39.407][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-05-04 16:01:39.408][conn$getEntryContent] 2 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-05-04 16:01:39.409][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-04 16:01:39.409][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-05-04 16:01:39.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:01:39.415][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:39.416][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:39.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:39.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:39.422][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:39.423][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:39.424][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2024-05-04 16:01:39.445][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:01:39.446][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:01:39.447][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.TRACE[2024-05-04 16:01:41.027][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1).
biodb.DEBUG[2024-05-04 16:01:42.472][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:01:42.473][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.content"
biodb.TRACE[2024-05-04 16:01:42.497][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/91a3a15871253de20fe3aa9cc158f120.request"
biodb.DEBUG[2024-05-04 16:01:42.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:01:42.499][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:42.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:42.504][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:42.505][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:42.505][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:42.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:42.522][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1".
biodb.DEBUG[2024-05-04 16:01:42.533][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:01:42.533][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:01:42.545][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1".
biodb.TRACE[2024-05-04 16:01:44.109][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS43240.1).
biodb.DEBUG[2024-05-04 16:01:45.476][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:01:45.478][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/a052eb5467fd4c16ef9a5120d12cce8e.content"
biodb.TRACE[2024-05-04 16:01:45.481][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/a052eb5467fd4c16ef9a5120d12cce8e.request"
biodb.TRACE[2024-05-04 16:01:45.483][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS12227.1.html, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html"
biodb.DEBUG[2024-05-04 16:01:45.485][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-04 16:01:45.486][self$createEntryFromContent] Creating NCBI CCDS entries from 2 content(s).
biodb.DEBUG[2024-05-04 16:01:45.487][self$createEntryFromContent] Parsing 2 NCBI CCDS entries.
biodb.DEBUG[2024-05-04 16:01:45.489][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:01:45.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:45.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:45.495][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:45.495][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:45.496][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:45.497][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:01:45.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:45.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:45.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.524][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:01:45.524][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:45.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.526][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.527][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:01:45.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:45.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.530][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:45.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:45.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:45.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:45.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:45.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:45.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.540][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:45.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:45.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:45.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:45.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.546][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:45.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:45.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:45.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:45.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:01:45.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:01:45.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:45.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:45.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:45.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:45.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:45.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:01:45.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:45.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:45.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.572][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:01:45.573][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:45.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.575][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.576][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:01:45.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:45.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.579][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:45.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:45.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.582][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:45.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:45.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:45.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:45.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.588][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:45.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:45.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:45.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:45.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:45.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:45.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:45.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:45.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:45.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:45.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.609][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:45.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:45.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:45.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:45.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:45.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:45.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:45.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:45.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:45.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:45.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:01:45.624][self$createEntryFromContent] Accession numbers: CCDS12227.1, CCDS43240.1.
biodb.TRACE[2024-05-04 16:01:45.625][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-04 16:01:45.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-04 16:01:45.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.628][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-04 16:01:45.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-04 16:01:45.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.631][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-04 16:01:45.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-04 16:01:45.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.639][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-04 16:01:45.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-04 16:01:45.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.642][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-04 16:01:45.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-04 16:01:45.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.645][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-04 16:01:45.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-04 16:01:45.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-04 16:01:45.655][biodb::testThat]
biodb.INFO [2024-05-04 16:01:45.656][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-05-04 16:01:45.656][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:01:45.657][biodb::testThat]
biodb.INFO [2024-05-04 16:01:45.663][biodb::testThat]
biodb.INFO [2024-05-04 16:01:45.663][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-05-04 16:01:45.664][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:01:45.665][biodb::testThat]
biodb.WARN [2024-05-04 16:01:45.680][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2024-05-04 16:01:45.699][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2024-05-04 16:01:45.708][biodb::testThat]
biodb.INFO [2024-05-04 16:01:45.709][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-05-04 16:01:45.710][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:01:45.710][biodb::testThat]
biodb.TRACE[2024-05-04 16:01:45.729][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:45.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:45.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.733][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:45.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:45.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.736][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:01:45.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:01:45.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.739][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:01:45.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:01:45.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.742][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-04 16:01:45.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-04 16:01:45.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.745][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-04 16:01:45.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-04 16:01:45.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.755][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:45.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:45.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.758][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:45.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:45.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.761][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:01:45.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:01:45.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.765][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:01:45.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:01:45.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.768][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-04 16:01:45.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-04 16:01:45.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:45.771][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-04 16:01:45.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-04 16:01:45.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:45.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-04 16:01:45.779][biodb::testThat]
biodb.INFO [2024-05-04 16:01:45.780][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-05-04 16:01:45.781][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:01:45.782][biodb::testThat]
biodb.INFO [2024-05-04 16:01:45.794][biodb::testThat]
biodb.INFO [2024-05-04 16:01:45.795][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-05-04 16:01:45.796][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:01:45.796][biodb::testThat]
biodb.INFO [2024-05-04 16:01:45.803][biodb::testThat]
biodb.INFO [2024-05-04 16:01:45.803][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-05-04 16:01:45.804][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:01:45.805][biodb::testThat]
biodb.DEBUG[2024-05-04 16:01:45.808][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2024-05-04 16:01:47.214][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1.
biodb.INFO [2024-05-04 16:01:48.680][biodb::testThat]
biodb.INFO [2024-05-04 16:01:48.681][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-05-04 16:01:48.682][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:01:48.683][biodb::testThat]
biodb.INFO [2024-05-04 16:01:48.689][bdb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-05-04 16:01:48.690][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2024-05-04 16:01:48.691][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2024-05-04 16:01:48.691][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-05-04 16:01:48.692][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:48.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:48.693][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:48.694][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:48.695][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.695][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-05-04 16:01:48.703][biodb::testContext]
biodb.INFO [2024-05-04 16:01:48.704][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-04 16:01:48.705][biodb::testContext] Test context - Gene long tests
biodb.INFO [2024-05-04 16:01:48.706][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-04 16:01:48.707][biodb::testContext]
biodb.INFO [2024-05-04 16:01:48.708][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-05-04 16:01:48.709][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-05-04 16:01:48.713][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-04 16:01:48.714][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-05-04 16:01:48.714][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-05-04 16:01:48.715][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:48.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.716][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:48.717][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-05-04 16:01:48.718][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-05-04 16:01:48.719][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:48.719][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.720][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:48.721][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-05-04 16:01:48.722][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-05-04 16:01:48.722][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:48.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.724][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:48.725][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-05-04 16:01:48.725][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-05-04 16:01:48.726][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-05-04 16:01:48.727][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:48.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.728][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:48.729][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-05-04 16:01:48.730][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-05-04 16:01:48.731][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-05-04 16:01:48.731][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:48.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.733][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:48.733][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-05-04 16:01:48.734][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-05-04 16:01:48.735][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:48.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:48.737][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-05-04 16:01:48.738][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-05-04 16:01:48.739][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-05-04 16:01:48.746][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:48.747][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:48.748][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-05-04 16:01:48.749][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-05-04 16:01:48.750][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:48.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.751][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:48.752][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-05-04 16:01:48.753][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-05-04 16:01:48.753][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-05-04 16:01:48.754][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:48.755][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:48.756][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-05-04 16:01:48.757][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-05-04 16:01:48.758][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-05-04 16:01:48.758][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-05-04 16:01:48.759][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-05-04 16:01:48.760][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-05-04 16:01:48.761][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:48.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:48.763][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-05-04 16:01:48.763][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-05-04 16:01:48.764][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:48.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.766][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:48.766][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-05-04 16:01:48.767][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-05-04 16:01:48.768][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:48.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:48.770][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-05-04 16:01:48.771][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-05-04 16:01:48.772][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:48.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.773][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:48.774][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-05-04 16:01:48.775][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-05-04 16:01:48.776][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:48.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:48.778][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-05-04 16:01:48.779][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-05-04 16:01:48.780][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:48.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.781][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:48.782][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-05-04 16:01:48.783][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-05-04 16:01:48.805][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-05-04 16:01:48.806][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:48.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:48.808][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-05-04 16:01:48.809][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-05-04 16:01:48.810][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-05-04 16:01:48.811][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:48.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:48.814][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-05-04 16:01:48.815][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:48.816][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-05-04 16:01:48.817][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:48.818][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:01:48.819][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:48.819][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:01:48.820][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:48.821][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:01:48.822][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-04 16:01:48.823][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:01:48.823][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:48.824][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-05-04 16:01:48.825][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:01:48.826][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:48.827][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:48.828][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-04 16:01:48.828][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-04 16:01:48.828][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-04 16:01:48.828][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-04 16:01:48.828][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-04 16:01:48.828][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-04 16:01:48.829][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:48.830][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:48.831][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:01:48.832][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:48.832][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:48.833][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:01:48.834][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:48.835][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:01:48.835][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:01:48.836][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:48.837][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:48.838][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-05-04 16:01:48.839][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:48.840][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-05-04 16:01:48.841][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:48.842][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:01:48.842][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:48.843][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:01:48.844][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:48.845][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:01:48.846][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-04 16:01:48.846][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:01:48.847][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:48.848][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-05-04 16:01:48.849][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:01:48.849][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:48.850][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:48.851][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-04 16:01:48.851][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-04 16:01:48.851][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-04 16:01:48.851][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-04 16:01:48.851][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-04 16:01:48.852][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-04 16:01:48.857][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:48.857][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:48.858][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:01:48.859][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:48.859][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:48.860][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:01:48.861][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:48.862][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:01:48.862][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:01:48.863][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:48.864][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:48.865][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-05-04 16:01:48.866][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:48.867][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-05-04 16:01:48.868][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:48.869][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:01:48.870][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:48.870][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:01:48.871][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:48.872][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:01:48.873][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-04 16:01:48.874][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:01:48.874][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:48.875][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-05-04 16:01:48.876][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:01:48.877][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:48.878][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:48.879][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:48.880][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-04 16:01:48.881][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:48.881][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:48.882][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:01:48.883][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:48.884][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:48.884][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:01:48.885][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:48.886][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:01:48.887][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:01:48.887][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:48.888][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:48.889][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-05-04 16:01:48.891][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:48.892][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-05-04 16:01:48.893][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:48.893][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:01:48.894][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:48.895][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:01:48.896][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:48.896][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:01:48.897][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-04 16:01:48.898][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:01:48.899][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:48.899][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-05-04 16:01:48.900][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:01:48.901][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:48.902][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:48.903][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:48.904][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-04 16:01:48.904][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:48.905][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:48.906][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:01:48.907][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:48.908][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:48.908][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:01:48.909][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:48.910][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:01:48.911][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:01:48.912][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:48.912][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:48.913][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-04 16:01:48.914][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:48.916][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:48.916][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:48.917][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:48.918][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.919][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:48.919][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:48.920][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:48.921][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:48.921][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:48.923][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:48.923][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:48.924][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:48.925][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.925][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:48.926][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:48.927][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:48.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:48.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:48.929][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:48.930][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:48.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:48.932][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.932][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:48.933][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:48.934][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:48.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:48.935][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:48.936][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:48.937][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:48.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:48.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.939][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:48.944][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:48.945][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:48.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:48.946][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:48.948][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:48.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:48.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:48.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.950][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:48.951][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:48.952][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:48.953][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:48.954][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:48.955][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:48.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:48.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:48.957][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:48.959][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:48.960][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:48.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:48.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:48.962][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:48.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:48.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:48.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:48.966][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:48.967][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:48.968][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:48.968][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:48.970][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:48.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:48.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:48.972][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:48.974][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:48.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:48.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:48.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:48.977][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:48.978][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:48.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:48.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:48.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:48.981][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-05-04 16:01:48.982][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-05-04 16:01:48.983][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-05-04 16:01:48.984][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-05-04 16:01:48.985][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-05-04 16:01:48.986][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-04 16:01:48.987][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-05-04 16:01:48.989][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-05-04 16:01:48.990][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-05-04 16:01:48.991][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-04 16:01:48.992][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-04 16:01:48.993][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-05-04 16:01:48.994][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-05-04 16:01:48.995][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-05-04 16:01:48.996][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-04 16:01:48.997][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-04 16:01:48.998][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-05-04 16:01:48.999][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-05-04 16:01:49.000][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-05-04 16:01:49.001][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-05-04 16:01:49.002][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-05-04 16:01:49.004][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-05-04 16:01:49.005][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-05-04 16:01:49.006][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-05-04 16:01:49.007][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-05-04 16:01:49.008][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-05-04 16:01:49.009][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-05-04 16:01:49.010][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-05-04 16:01:49.011][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-05-04 16:01:49.012][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-05-04 16:01:49.014][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-05-04 16:01:49.015][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-05-04 16:01:49.016][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-05-04 16:01:49.017][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-05-04 16:01:49.018][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-05-04 16:01:49.019][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-05-04 16:01:49.020][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-05-04 16:01:49.021][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-05-04 16:01:49.022][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-05-04 16:01:49.023][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-05-04 16:01:49.024][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-05-04 16:01:49.029][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-05-04 16:01:49.030][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-05-04 16:01:49.031][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-05-04 16:01:49.032][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-05-04 16:01:49.033][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-04 16:01:49.035][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-05-04 16:01:49.036][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-05-04 16:01:49.037][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-05-04 16:01:49.038][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-05-04 16:01:49.039][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-05-04 16:01:49.040][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-05-04 16:01:49.041][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-05-04 16:01:49.042][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-05-04 16:01:49.043][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-05-04 16:01:49.044][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-05-04 16:01:49.045][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-05-04 16:01:49.046][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-05-04 16:01:49.047][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-05-04 16:01:49.048][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-05-04 16:01:49.049][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-05-04 16:01:49.050][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-05-04 16:01:49.052][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-05-04 16:01:49.053][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-05-04 16:01:49.054][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-05-04 16:01:49.055][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-05-04 16:01:49.056][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-05-04 16:01:49.057][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-05-04 16:01:49.058][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-05-04 16:01:49.059][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-05-04 16:01:49.060][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-05-04 16:01:49.062][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-05-04 16:01:49.063][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-05-04 16:01:49.064][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-05-04 16:01:49.065][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-05-04 16:01:49.066][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-05-04 16:01:49.067][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-05-04 16:01:49.068][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-05-04 16:01:49.069][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-05-04 16:01:49.071][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-05-04 16:01:49.072][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-05-04 16:01:49.073][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-05-04 16:01:49.074][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-05-04 16:01:49.075][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-05-04 16:01:49.077][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-05-04 16:01:49.077][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-04 16:01:49.078][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:49.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:49.080][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:49.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:49.081][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:49.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:49.083][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:49.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:49.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:49.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:49.086][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:49.086][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:49.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:49.088][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:49.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:49.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:49.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:49.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:49.092][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:49.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:49.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:49.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:49.094][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:49.095][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:49.096][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:49.097][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:49.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:49.098][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:49.099][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:49.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:49.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:49.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:49.102][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:49.103][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:49.103][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:49.104][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:49.105][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:49.106][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:49.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:49.107][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:49.108][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:49.108][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:49.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:49.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:49.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:49.116][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:49.117][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:49.117][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:49.118][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:49.119][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:49.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:49.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:49.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:49.121][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:49.122][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:49.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:49.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:49.124][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:49.125][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:49.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:49.126][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:49.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:49.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:49.128][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:49.129][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:49.130][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:49.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:49.131][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:49.132][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:49.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:49.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:49.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:49.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:49.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:49.136][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:49.136][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:49.137][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:49.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:49.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:49.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:49.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:49.141][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:49.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:49.142][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:49.143][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:49.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:49.144][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:49.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:49.146][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:49.146][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:49.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:49.148][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:49.148][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:49.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:49.150][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:49.151][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:49.151][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:49.152][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:49.153][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:49.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:49.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:49.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:49.156][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:49.156][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:49.157][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:49.158][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:49.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:49.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:49.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:49.161][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:49.161][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:49.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:49.163][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:49.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:49.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:49.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:49.166][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:49.166][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:49.167][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:49.168][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:49.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:49.169][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:49.170][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:49.172][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-05-04 16:01:49.173][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-05-04 16:01:49.175][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:49.176][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-05-04 16:01:49.176][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:49.177][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:01:49.178][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:49.179][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:01:49.179][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:49.180][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:01:49.181][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-05-04 16:01:49.182][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:01:49.183][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:49.183][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-05-04 16:01:49.184][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:01:49.185][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-05-04 16:01:49.185][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-05-04 16:01:49.186][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:49.187][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:49.187][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-04 16:01:49.188][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:49.189][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:49.190][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:01:49.190][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:49.191][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:49.192][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:01:49.193][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-05-04 16:01:49.193][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-05-04 16:01:49.193][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:01:49.194][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:01:49.195][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:49.196][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:49.197][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-05-04 16:01:49.203][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:49.204][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-05-04 16:01:49.204][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:49.205][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:01:49.206][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:49.207][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:01:49.207][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:49.208][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:01:49.209][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-04 16:01:49.210][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:01:49.210][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:49.211][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-05-04 16:01:49.212][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:01:49.213][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-05-04 16:01:49.213][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-05-04 16:01:49.213][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-05-04 16:01:49.213][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-05-04 16:01:49.213][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-05-04 16:01:49.213][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-05-04 16:01:49.214][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:49.215][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-04 16:01:49.215][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-04 16:01:49.216][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:49.217][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:49.218][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:01:49.218][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:49.219][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:49.220][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:01:49.221][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-04 16:01:49.221][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-04 16:01:49.222][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:01:49.222][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:01:49.223][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:49.224][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:49.225][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-05-04 16:01:49.226][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:49.227][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-05-04 16:01:49.228][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:49.229][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:01:49.230][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:49.231][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:01:49.231][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:49.232][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:01:49.233][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-04 16:01:49.234][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:01:49.235][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:49.236][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-05-04 16:01:49.237][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:01:49.237][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-05-04 16:01:49.237][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:01:49.237][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:01:49.237][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:01:49.237][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:01:49.237][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:01:49.237][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:01:49.237][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:01:49.237][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:01:49.237][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:01:49.237][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-05-04 16:01:49.237][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:01:49.237][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:01:49.237][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:01:49.238][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:49.239][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-04 16:01:49.239][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-04 16:01:49.239][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-04 16:01:49.240][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-05-04 16:01:49.241][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:49.242][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:49.243][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:01:49.243][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:49.244][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:49.245][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:01:49.246][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-04 16:01:49.246][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-04 16:01:49.246][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-05-04 16:01:49.246][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:01:49.247][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:01:49.248][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:49.249][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-05-04 16:01:49.250][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-05-04 16:01:49.251][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:49.252][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-05-04 16:01:49.253][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:49.254][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:01:49.255][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:49.256][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:01:49.256][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:49.257][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:01:49.258][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-04 16:01:49.259][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:01:49.260][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:49.261][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-05-04 16:01:49.261][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:01:49.262][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-05-04 16:01:49.262][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-05-04 16:01:49.263][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:49.264][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:49.265][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-05-04 16:01:49.266][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:49.266][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:49.267][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:01:49.268][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:49.269][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:49.270][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:01:49.270][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-04 16:01:49.270][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-04 16:01:49.270][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-05-04 16:01:49.271][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:01:49.272][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:01:49.273][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:49.274][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-05-04 16:01:49.275][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-05-04 16:01:49.276][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-04 16:01:49.277][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-04 16:01:49.278][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-05-04 16:01:49.280][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-04 16:01:49.281][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-05-04 16:01:49.292][super$initialize] Initialize connector ncbi.gene.
biodb.DEBUG[2024-05-04 16:01:49.293][super$initialize] Register connector ncbi.gene with the request scheduler
biodb.DEBUG[2024-05-04 16:01:49.294][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.gene.
biodb.DEBUG[2024-05-04 16:01:49.296][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2024-05-04 16:01:49.297][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-04 16:01:49.297][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-04 16:01:49.298][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2024-05-04 16:01:49.299][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-04 16:01:49.300][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-04 16:01:49.352][biodb$getFactory()$createConn] Creating new connector ncbi.gene for database class ncbi.gene .
biodb.INFO [2024-05-04 16:01:49.356][biodb::testThat]
biodb.INFO [2024-05-04 16:01:49.356][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-05-04 16:01:49.357][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:01:49.358][biodb::testThat]
biodb.TRACE[2024-05-04 16:01:49.363][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-2833-content.xml".
biodb.DEBUG[2024-05-04 16:01:49.364][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-05-04 16:01:49.367][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-05-04 16:01:49.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:01:49.369][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:49.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:49.381][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:49.382][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:49.382][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:49.383][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:01:49.393][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:49.394][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:49.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:49.395][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:49.397][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:49.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:49.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:49.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:49.402][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:01:49.403][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:01:49.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:49.427][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:49.428][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:01:49.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:01:49.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:49.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:49.468][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:01:49.469][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:01:49.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:49.489][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:49.491][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:01:49.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:01:49.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:49.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:49.513][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:01:49.514][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:01:49.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:49.516][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:49.517][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:01:49.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:01:49.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:49.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:49.520][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:01:49.539][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:49.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:49.541][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:49.543][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:01:49.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:49.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:49.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:49.546][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:49.547][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:49.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:49.549][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:49.551][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:49.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:49.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:49.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:49.557][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:49.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:49.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:49.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:49.561][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:49.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:49.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:49.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:49.564][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:49.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:49.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:49.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:49.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:49.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:49.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:49.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:49.570][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:49.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:49.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:49.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:49.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:49.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:49.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:49.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:49.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:49.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:49.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:49.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:49.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:49.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:49.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:49.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:49.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:49.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:49.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:49.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:49.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:49.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:49.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:49.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:49.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:49.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:49.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:49.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:01:49.598][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2833.
biodb.TRACE[2024-05-04 16:01:49.600][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:49.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:49.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:49.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:49.603][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:49.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:49.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:49.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:49.606][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:49.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:49.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:49.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:49.609][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:49.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:49.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:49.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:49.613][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:49.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:49.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:49.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:01:49.616][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-05-04 16:01:49.640][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2024-05-04 16:01:49.641][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2024-05-04 16:01:49.642][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2024-05-04 16:01:49.691][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-05-04 16:01:49.692][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-04 16:01:49.692][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-05-04 16:01:49.702][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-04 16:01:49.703][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-04 16:01:49.705][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-05-04 16:01:49.705][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-04 16:01:49.706][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-05-04 16:01:49.707][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-04 16:01:49.708][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-05-04 16:01:49.719][self$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.DEBUG[2024-05-04 16:01:49.720][private$loadEntries] Creating entries from ids [1]: "CCDS14416.1".
biodb.DEBUG[2024-05-04 16:01:49.721][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-04 16:01:49.723][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14416.1".
biodb.TRACE[2024-05-04 16:01:49.724][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-04 16:01:49.725][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-04 16:01:49.726][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-05-04 16:01:49.727][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-05-04 16:01:49.728][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-04 16:01:49.729][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-05-04 16:01:49.731][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:01:49.732][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:49.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:49.737][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:49.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:49.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:49.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:49.741][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1".
biodb.DEBUG[2024-05-04 16:01:49.743][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:01:49.744][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:01:49.745][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1".
biodb.TRACE[2024-05-04 16:01:51.112][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14416.1).
biodb.DEBUG[2024-05-04 16:01:52.566][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:01:52.568][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/cb67b3a5b745c7932ff9adec9d1972cf.content"
biodb.TRACE[2024-05-04 16:01:52.571][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/cb67b3a5b745c7932ff9adec9d1972cf.request"
biodb.TRACE[2024-05-04 16:01:52.573][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14416.1.html"
biodb.DEBUG[2024-05-04 16:01:52.575][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-04 16:01:52.576][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-05-04 16:01:52.577][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-05-04 16:01:52.578][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:01:52.579][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:52.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:52.592][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:52.593][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:52.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:52.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:01:52.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:52.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:52.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.610][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:01:52.611][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:52.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.612][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.614][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:01:52.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:52.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.617][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:52.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:52.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.620][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:52.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:52.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:52.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:52.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.627][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:52.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:52.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:52.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:52.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:52.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:52.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:52.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:52.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:52.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:52.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:52.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:52.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:52.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:52.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:01:52.651][self$createEntryFromContent] Accession numbers: CCDS14416.1.
biodb.TRACE[2024-05-04 16:01:52.652][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:52.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:52.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.655][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:52.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:52.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.659][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:52.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:52.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.662][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:01:52.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:01:52.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.665][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:01:52.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:01:52.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.669][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-04 16:01:52.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-04 16:01:52.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.672][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-04 16:01:52.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-04 16:01:52.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:52.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:52.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.690][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:52.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:52.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:52.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:52.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:52.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:52.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:52.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:52.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.709][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:52.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:52.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.712][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:52.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:52.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:52.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:52.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.719][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:52.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:52.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.722][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:52.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:52.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:52.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:52.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.735][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:52.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:52.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.738][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:52.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:52.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.742][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:52.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:52.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.745][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:52.746][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:52.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.747][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:52.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:52.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.758][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:01:52.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:01:52.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.762][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-04 16:01:52.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:01:52.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.770][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-04 16:01:52.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:01:52.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.773][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:01:52.774][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:01:52.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.776][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.777][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:01:52.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:01:52.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.787][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:01:52.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:01:52.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.790][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-04 16:01:52.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:01:52.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.794][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-04 16:01:52.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:01:52.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.797][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:01:52.798][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:01:52.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.800][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.800][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:01:52.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:01:52.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.811][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:52.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:52.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.814][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:52.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:52.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.817][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:52.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:52.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.821][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:52.822][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:52.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.823][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.824][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:52.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:52.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.835][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:52.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:52.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.838][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:52.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:52.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.841][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:52.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:52.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.845][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:52.846][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:52.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.847][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.848][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:52.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:52.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.863][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:01:52.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:01:52.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.867][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:01:52.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:01:52.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.870][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:01:52.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:01:52.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.873][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:01:52.874][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:01:52.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.876][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.877][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:01:52.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:01:52.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.887][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:01:52.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:52.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.891][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:52.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:52.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.894][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:52.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:52.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.897][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:01:52.898][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:52.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.900][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.901][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:01:52.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:52.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.911][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:01:52.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:52.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.915][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:52.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:52.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.918][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:52.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:52.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.922][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:01:52.923][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:52.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.924][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.925][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:01:52.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:52.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.935][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:52.936][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:52.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.942][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.946][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-04 16:01:52.947][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:01:52.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.949][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.953][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:52.954][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:52.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.955][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.959][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:01:52.960][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:01:52.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.961][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.966][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-04 16:01:52.967][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:01:52.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.968][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.973][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:52.974][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:52.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.975][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.980][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:52.980][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:52.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.982][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.986][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:52.987][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:52.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:52.988][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:52.996][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3002-content.xml".
biodb.DEBUG[2024-05-04 16:01:52.997][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-05-04 16:01:52.998][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-05-04 16:01:52.999][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:01:53.000][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:53.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:53.005][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:53.006][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:53.007][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:53.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:01:53.017][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:53.018][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:53.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:53.020][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:53.021][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:53.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:53.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:53.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:53.024][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:01:53.025][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:01:53.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:53.027][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:53.028][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:01:53.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:01:53.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:53.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:53.031][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:01:53.032][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:01:53.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:53.033][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:53.035][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:01:53.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:01:53.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:53.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:53.043][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:01:53.044][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:01:53.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:53.045][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:53.047][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:01:53.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:01:53.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:53.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:53.050][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:01:53.050][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:53.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:53.052][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:53.053][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:01:53.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:53.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:53.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:53.056][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:53.057][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:53.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:53.059][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:53.061][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:53.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:53.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:53.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:53.066][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:53.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:53.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:53.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:53.069][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:53.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:53.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:53.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:53.072][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:53.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:53.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:53.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:53.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:53.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:53.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:53.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:53.079][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:53.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:53.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:53.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:53.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:53.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:53.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:53.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:53.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:53.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:53.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:53.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:53.088][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:53.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:53.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:53.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:53.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:53.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:53.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:53.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:53.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:53.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:53.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:53.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:53.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:53.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:53.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:53.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:01:53.101][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3002.
biodb.TRACE[2024-05-04 16:01:53.103][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:53.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:53.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:53.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:53.106][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:53.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:53.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:53.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:53.109][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:53.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:53.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:53.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:53.112][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:53.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:53.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:53.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:53.115][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:53.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:53.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:53.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:01:53.122][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-05-04 16:01:53.123][private$loadEntries] Creating entries from ids [1]: "CCDS9633.1".
biodb.DEBUG[2024-05-04 16:01:53.158][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-04 16:01:53.170][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS9633.1".
biodb.TRACE[2024-05-04 16:01:53.172][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-04 16:01:53.173][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-04 16:01:53.173][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-05-04 16:01:53.174][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-05-04 16:01:53.175][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-04 16:01:53.176][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-05-04 16:01:53.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:01:53.192][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:53.193][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:53.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:53.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:53.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:53.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:53.216][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.DEBUG[2024-05-04 16:01:53.218][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:01:53.219][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:01:53.220][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.TRACE[2024-05-04 16:01:54.602][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1).
biodb.DEBUG[2024-05-04 16:01:56.007][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:01:56.009][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.content"
biodb.TRACE[2024-05-04 16:01:56.012][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.request"
biodb.TRACE[2024-05-04 16:01:56.014][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS9633.1.html"
biodb.DEBUG[2024-05-04 16:01:56.015][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-04 16:01:56.016][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-05-04 16:01:56.017][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-05-04 16:01:56.018][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:01:56.019][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:56.019][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:56.024][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:56.025][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:56.025][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:56.026][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:01:56.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.049][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:01:56.050][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.051][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.052][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:01:56.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.055][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.059][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.065][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:01:56.086][self$createEntryFromContent] Accession numbers: CCDS9633.1.
biodb.TRACE[2024-05-04 16:01:56.093][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.097][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.100][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.103][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:01:56.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:01:56.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.106][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:01:56.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:01:56.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.110][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-04 16:01:56.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-04 16:01:56.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.113][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-04 16:01:56.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-04 16:01:56.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.128][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:56.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:56.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.155][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:56.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:56.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.158][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:56.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:56.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.161][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:56.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:56.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.176][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.179][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.180][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.181][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.192][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:01:56.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:01:56.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.195][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-04 16:01:56.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:01:56.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.203][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-04 16:01:56.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:01:56.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.206][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:01:56.207][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:01:56.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.208][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.209][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:01:56.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:01:56.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.218][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:01:56.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:01:56.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.221][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-04 16:01:56.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:01:56.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.224][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-04 16:01:56.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:01:56.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.227][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:01:56.228][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:01:56.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.229][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.230][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:01:56.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:01:56.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.240][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:56.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:56.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.243][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:56.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:56.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.246][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:56.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:56.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.249][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:56.250][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:56.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.252][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.252][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:56.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:56.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.262][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.265][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.268][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.271][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.272][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.274][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.274][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.289][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:01:56.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:01:56.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.292][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:01:56.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:01:56.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.295][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:01:56.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:01:56.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.298][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:01:56.299][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:01:56.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.300][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.301][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:01:56.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:01:56.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.311][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:01:56.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:56.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.314][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:56.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:56.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.317][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:56.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:56.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.321][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:01:56.321][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:56.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.323][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.324][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:01:56.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:56.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.334][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:01:56.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.337][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.340][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.343][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:01:56.344][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.346][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.346][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:01:56.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.361][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.362][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.363][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.368][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-04 16:01:56.369][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:01:56.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.370][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.374][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.375][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.376][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.381][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:01:56.381][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:01:56.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.383][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.387][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-04 16:01:56.388][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:01:56.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.390][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.394][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:56.395][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:56.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.396][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.400][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.401][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.403][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.407][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:56.408][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:56.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.409][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.418][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3627-content.xml".
biodb.DEBUG[2024-05-04 16:01:56.419][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-05-04 16:01:56.420][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-05-04 16:01:56.422][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:01:56.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:56.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:56.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:56.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:56.428][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:56.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:01:56.446][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.447][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.448][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.453][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:01:56.454][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:01:56.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.455][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.457][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:01:56.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:01:56.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.460][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:01:56.461][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:01:56.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.467][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.469][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:01:56.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:01:56.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.472][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:01:56.473][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:01:56.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.475][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.476][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:01:56.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:01:56.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.479][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:01:56.480][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:56.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.482][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.483][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:01:56.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:56.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.486][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:56.487][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:56.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.489][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.492][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:56.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:56.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.497][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.501][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:56.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:56.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.504][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:56.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:56.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:56.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:56.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.513][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:01:56.533][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3627.
biodb.TRACE[2024-05-04 16:01:56.535][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.538][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.541][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.544][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.552][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:01:56.555][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-05-04 16:01:56.556][private$loadEntries] Creating entries from ids [1]: "CCDS43240.1".
biodb.DEBUG[2024-05-04 16:01:56.557][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-04 16:01:56.558][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS43240.1".
biodb.TRACE[2024-05-04 16:01:56.559][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:01:56.560][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2024-05-04 16:01:56.561][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-05-04 16:01:56.562][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-05-04 16:01:56.563][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-05-04 16:01:56.565][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:01:56.565][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:56.566][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:56.571][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:56.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:56.572][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:56.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:01:56.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.585][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:01:56.586][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.587][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.589][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:01:56.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.592][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.595][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:01:56.624][self$createEntryFromContent] Accession numbers: CCDS43240.1.
biodb.TRACE[2024-05-04 16:01:56.625][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.632][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.636][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.639][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:01:56.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:01:56.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.642][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:01:56.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:01:56.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.645][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-04 16:01:56.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-04 16:01:56.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.648][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-04 16:01:56.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-04 16:01:56.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.658][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:56.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:56.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.675][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.678][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.684][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:56.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:56.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:56.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:56.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.690][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:56.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:56.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.713][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.713][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.715][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.725][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:01:56.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:01:56.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.728][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-04 16:01:56.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:01:56.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.731][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-04 16:01:56.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:01:56.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.734][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:01:56.735][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:01:56.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.736][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.737][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:01:56.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:01:56.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.747][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:01:56.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:01:56.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.750][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-04 16:01:56.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:01:56.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.753][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-04 16:01:56.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:01:56.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.756][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:01:56.757][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:01:56.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.759][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.759][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:01:56.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:01:56.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.770][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:56.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:56.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.773][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:56.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:56.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.776][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:56.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:56.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.779][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:56.780][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:56.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.781][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.782][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:56.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:56.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.797][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.800][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.803][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.807][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.807][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.809][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.820][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:01:56.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:01:56.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.824][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:01:56.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:01:56.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.827][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:01:56.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:01:56.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.830][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:01:56.831][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:01:56.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.832][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.833][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:01:56.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:01:56.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.843][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:01:56.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:56.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.846][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:56.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:56.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.849][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:56.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:56.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.852][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:01:56.853][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:56.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.854][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.855][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:01:56.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:56.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.869][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:01:56.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.872][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.875][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.878][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:01:56.879][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.881][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.881][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:01:56.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.891][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.892][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:56.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.893][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.898][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-04 16:01:56.899][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:01:56.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.900][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.904][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.905][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.906][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.911][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:01:56.911][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:01:56.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.913][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.917][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-04 16:01:56.918][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:01:56.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.920][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.924][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:56.924][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:56.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.926][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.930][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.931][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:56.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.933][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.937][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:56.938][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:56.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.939][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.947][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-4316-content.xml".
biodb.DEBUG[2024-05-04 16:01:56.948][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-05-04 16:01:56.949][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-05-04 16:01:56.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:01:56.955][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:56.956][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:56.961][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:56.961][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:56.962][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:56.963][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:01:56.975][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.976][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.977][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:56.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:56.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.982][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:01:56.982][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:01:56.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.984][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.985][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:01:56.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:01:56.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.988][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:01:56.989][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:01:56.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.990][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.992][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:01:56.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:01:56.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.995][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:01:56.996][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:01:56.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:56.997][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:56.999][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:01:56.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:01:57.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:57.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:57.002][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:01:57.002][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:57.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:57.004][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:57.005][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:01:57.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:57.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:57.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:57.008][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:57.009][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:57.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:57.011][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:57.013][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:57.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:01:57.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:57.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:57.017][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:57.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:57.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:57.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:57.021][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:57.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:57.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:57.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:57.024][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:57.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:57.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:57.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:57.027][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:57.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:57.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:57.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:57.030][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:57.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:01:57.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:57.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:57.033][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:57.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:57.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:57.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:57.036][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:57.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:57.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:57.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:57.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:57.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:57.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:57.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:57.055][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:57.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:57.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:57.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:57.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:57.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:57.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:57.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:57.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:57.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:57.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:57.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:01:57.065][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 4316.
biodb.TRACE[2024-05-04 16:01:57.067][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:57.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:57.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:57.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:57.070][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:01:57.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:01:57.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:57.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:57.073][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:57.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:57.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:57.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:57.076][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:57.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:57.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:57.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:57.079][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:57.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:01:57.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:57.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:01:57.082][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-05-04 16:01:57.083][private$loadEntries] Creating entries from ids [1]: "CCDS8317.1".
biodb.DEBUG[2024-05-04 16:01:57.084][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-04 16:01:57.085][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS8317.1".
biodb.TRACE[2024-05-04 16:01:57.086][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-04 16:01:57.087][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-04 16:01:57.088][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-05-04 16:01:57.089][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-05-04 16:01:57.089][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-04 16:01:57.090][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-05-04 16:01:57.093][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:01:57.093][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:57.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:57.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:57.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:57.100][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:57.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:57.102][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.DEBUG[2024-05-04 16:01:57.104][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:01:57.105][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:01:57.106][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.TRACE[2024-05-04 16:01:58.599][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1).
biodb.DEBUG[2024-05-04 16:02:00.047][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:02:00.049][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.content"
biodb.TRACE[2024-05-04 16:02:00.052][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.request"
biodb.TRACE[2024-05-04 16:02:00.054][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS8317.1.html"
biodb.DEBUG[2024-05-04 16:02:00.055][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-04 16:02:00.057][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-05-04 16:02:00.057][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-05-04 16:02:00.059][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:00.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:00.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:00.065][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:00.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:00.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:00.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:00.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:00.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:00.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.090][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:02:00.090][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:00.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.092][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.093][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:02:00.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:00.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.097][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:00.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:00.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.100][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:00.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:00.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.103][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:00.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:00.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.106][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:00.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:00.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:00.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:00.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.112][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:00.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:00.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:00.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:00.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:00.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:00.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:00.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:00.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:00.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:00.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:00.128][self$createEntryFromContent] Accession numbers: CCDS8317.1.
biodb.TRACE[2024-05-04 16:02:00.128][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:00.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:00.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.132][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:00.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:00.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.135][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:00.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:00.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.139][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:02:00.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:02:00.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.142][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:02:00.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:02:00.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.145][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-04 16:02:00.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-04 16:02:00.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.148][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-04 16:02:00.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-04 16:02:00.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:00.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:00.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.164][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:00.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:00.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:00.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:00.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.174][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:00.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:00.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:00.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:00.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:00.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:00.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:00.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:00.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:00.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:00.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.191][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:00.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:00.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.194][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:00.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:00.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.197][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:00.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:00.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:00.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:00.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:00.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:00.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.212][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:00.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:00.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.215][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:00.216][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:00.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.217][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:00.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:00.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.228][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:00.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:00.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.232][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:00.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:00.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.235][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:00.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:00.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.238][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:00.243][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:00.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.245][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.246][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:00.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:00.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.256][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:02:00.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:00.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.259][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:00.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:00.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.262][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:00.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:00.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.265][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:02:00.266][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:00.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.267][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.268][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:02:00.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:00.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.279][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:00.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:00.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.282][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:00.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:00.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.285][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:00.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:00.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.288][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:00.289][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:00.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.290][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.291][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:00.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:00.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.301][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:00.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:00.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.304][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:00.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:00.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.307][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:00.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:00.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.310][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:00.311][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:00.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.313][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.313][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:00.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:00.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.329][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:00.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:00.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.332][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:00.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:00.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.335][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:00.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:00.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.338][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:00.339][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:00.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.341][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.341][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:00.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:00.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.352][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:02:00.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:00.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.355][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:00.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:00.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.359][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:00.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:00.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.362][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:02:00.363][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:00.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.364][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.365][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:02:00.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:00.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.375][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:02:00.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:00.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.378][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:00.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:00.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.382][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:00.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:00.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.385][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:02:00.386][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:00.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.387][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.388][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:02:00.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:00.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.398][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:00.399][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:00.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.400][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.409][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:00.410][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:00.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.412][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.417][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:00.417][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:00.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.419][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.423][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:00.424][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:00.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.425][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.430][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:00.431][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:00.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.432][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.437][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:00.437][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:00.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.439][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.444][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:00.445][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:00.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.446][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.451][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:00.452][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:00.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.453][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.465][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-50943-content.xml".
biodb.DEBUG[2024-05-04 16:02:00.467][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-05-04 16:02:00.468][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-05-04 16:02:00.469][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:00.470][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:00.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:00.475][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:00.476][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:00.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:00.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:00.503][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:00.504][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:00.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.506][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:00.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:00.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.511][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:00.512][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:00.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.513][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.515][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:00.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:00.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.519][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:02:00.519][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:00.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.521][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.523][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:02:00.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:00.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.531][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:00.532][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:00.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.534][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.536][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:00.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:00.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.539][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:02:00.539][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:00.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.541][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.543][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:02:00.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:00.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.546][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:00.547][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:00.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.548][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.554][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:00.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:00.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:00.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:00.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.566][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:00.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:00.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.570][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:00.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:00.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.573][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:00.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:00.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:00.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:00.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:00.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:00.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:00.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:00.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:00.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:00.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:00.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:00.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:00.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:00.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:00.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:00.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:00.599][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 50943.
biodb.TRACE[2024-05-04 16:02:00.601][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:00.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:00.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.604][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:00.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:00.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.607][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:00.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:00.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.610][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:00.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:00.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:00.613][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:00.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:00.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:00.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:00.621][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-05-04 16:02:00.622][private$loadEntries] Creating entries from ids [1]: "CCDS14323.1".
biodb.DEBUG[2024-05-04 16:02:00.623][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-04 16:02:00.624][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14323.1".
biodb.TRACE[2024-05-04 16:02:00.625][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-04 16:02:00.626][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-04 16:02:00.627][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-05-04 16:02:00.628][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-05-04 16:02:00.629][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-04 16:02:00.630][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-05-04 16:02:00.632][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:00.633][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:00.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:00.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:00.638][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:00.639][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:00.640][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:00.641][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.DEBUG[2024-05-04 16:02:00.643][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:00.644][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:00.645][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.TRACE[2024-05-04 16:02:02.034][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1).
biodb.DEBUG[2024-05-04 16:02:03.470][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:02:03.472][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.content"
biodb.TRACE[2024-05-04 16:02:03.475][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.request"
biodb.TRACE[2024-05-04 16:02:03.478][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14323.1.html"
biodb.DEBUG[2024-05-04 16:02:03.479][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-04 16:02:03.480][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-05-04 16:02:03.481][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-05-04 16:02:03.482][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:03.483][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:03.484][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:03.488][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:03.489][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:03.490][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:03.490][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:03.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:03.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:03.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.510][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:02:03.511][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:03.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.513][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.514][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:02:03.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:03.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.517][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:03.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:03.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.520][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:03.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:03.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:03.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:03.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.531][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:03.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:03.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.537][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:03.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:03.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:03.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:03.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:03.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:03.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:03.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:03.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:03.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:03.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:03.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:03.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:03.556][self$createEntryFromContent] Accession numbers: CCDS14323.1.
biodb.TRACE[2024-05-04 16:02:03.557][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:03.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:03.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.560][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:03.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:03.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.563][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:03.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:03.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.567][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:02:03.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:02:03.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.570][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:02:03.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:02:03.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.573][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-04 16:02:03.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-04 16:02:03.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.576][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-04 16:02:03.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-04 16:02:03.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:03.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:03.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.587][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:03.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:03.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:03.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:03.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:03.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:03.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.600][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:03.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:03.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:03.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:03.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:03.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:03.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:03.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:03.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.619][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:03.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:03.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.622][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:03.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:03.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.625][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:03.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:03.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.634][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:03.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:03.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.637][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:03.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:03.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:03.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:03.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.643][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:03.644][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:03.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.645][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:03.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:03.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.656][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:03.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:03.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.660][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:03.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:03.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.663][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:03.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:03.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.666][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:03.667][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:03.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.668][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.669][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:03.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:03.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.680][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:02:03.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:03.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.683][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:03.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:03.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.686][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:03.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:03.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.694][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:02:03.695][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:03.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.697][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.698][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:02:03.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:03.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.708][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:03.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:03.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.710][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:03.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:03.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.714][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:03.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:03.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.717][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:03.717][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:03.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.719][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.720][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:03.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:03.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.730][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:03.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:03.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.733][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:03.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:03.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.736][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:03.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:03.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.739][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:03.740][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:03.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.742][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.742][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:03.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:03.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.753][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:03.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:03.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.756][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:03.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:03.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.759][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:03.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:03.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.762][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:03.763][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:03.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.764][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.765][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:03.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:03.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.780][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:02:03.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:03.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.783][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:03.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:03.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.786][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:03.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:03.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.789][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:02:03.790][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:03.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.791][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.792][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:02:03.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:03.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.802][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:02:03.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:03.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.805][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:03.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:03.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.809][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:03.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:03.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.812][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:02:03.812][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:03.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.814][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.815][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:02:03.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:03.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.825][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:03.826][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:03.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.827][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.831][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:03.832][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:03.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.834][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.838][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:03.839][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:03.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.841][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.845][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:03.846][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:03.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.847][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.852][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:03.857][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:03.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.859][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.864][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:03.865][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:03.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.866][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.871][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:03.872][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:03.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.873][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.877][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:03.878][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:03.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.880][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.886][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-5551-content.xml".
biodb.DEBUG[2024-05-04 16:02:03.887][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-05-04 16:02:03.888][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-05-04 16:02:03.889][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:03.890][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:03.891][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:03.895][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:03.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:03.897][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:03.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:03.906][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:03.907][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:03.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.909][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:03.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:03.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.913][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:03.914][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:03.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.916][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.917][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:03.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:03.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.920][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:02:03.921][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:03.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.922][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.923][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:02:03.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:03.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.927][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:03.928][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:03.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.929][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.930][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:03.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:03.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.933][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:02:03.934][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:03.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.936][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.937][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:02:03.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:03.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.941][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:03.941][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:03.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.943][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.945][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:03.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:03.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.954][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:03.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:03.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.958][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:03.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:03.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.961][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:03.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:03.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:03.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:03.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.967][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:03.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:03.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:03.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:03.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.973][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:03.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:03.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:03.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:03.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:03.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:03.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:03.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:03.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:03.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:03.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:03.989][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 5551.
biodb.TRACE[2024-05-04 16:02:03.990][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:03.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:03.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.993][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:03.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:03.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:03.997][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:03.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:03.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:03.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:04.000][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:04.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:04.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:04.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:04.003][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:04.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:04.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:04.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:04.007][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-05-04 16:02:04.007][private$loadEntries] Creating entries from ids [1]: "CCDS7305.1".
biodb.DEBUG[2024-05-04 16:02:04.008][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-04 16:02:04.009][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS7305.1".
biodb.TRACE[2024-05-04 16:02:04.010][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-04 16:02:04.011][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-04 16:02:04.012][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-05-04 16:02:04.013][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-05-04 16:02:04.014][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-04 16:02:04.014][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-05-04 16:02:04.017][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:04.017][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:04.018][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:04.023][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:04.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:04.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:04.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:04.169][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.DEBUG[2024-05-04 16:02:04.172][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:04.172][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:04.174][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.TRACE[2024-05-04 16:02:05.602][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1).
biodb.DEBUG[2024-05-04 16:02:07.017][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:02:07.019][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.content"
biodb.TRACE[2024-05-04 16:02:07.022][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.request"
biodb.TRACE[2024-05-04 16:02:07.024][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS7305.1.html"
biodb.DEBUG[2024-05-04 16:02:07.026][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-04 16:02:07.027][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-05-04 16:02:07.028][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-05-04 16:02:07.029][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:07.029][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:07.030][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:07.035][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:07.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:07.036][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:07.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:07.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:07.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:07.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.055][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:02:07.056][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:07.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.058][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.059][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:02:07.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:07.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.062][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:07.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:07.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.065][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:07.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:07.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:07.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:07.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.071][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:07.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:07.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:07.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:07.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:07.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:07.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:07.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:07.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:07.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:07.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:07.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:07.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:07.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:07.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:07.093][self$createEntryFromContent] Accession numbers: CCDS7305.1.
biodb.TRACE[2024-05-04 16:02:07.093][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:07.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:07.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.096][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:07.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:07.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.100][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:07.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:07.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.103][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:02:07.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:02:07.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.106][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:02:07.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:02:07.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.109][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-04 16:02:07.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-04 16:02:07.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.112][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-04 16:02:07.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-04 16:02:07.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.116][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:07.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:07.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.124][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:07.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:07.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:07.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:07.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:07.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:07.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:07.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:07.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:07.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:07.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:07.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:07.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:07.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:07.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.154][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:07.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:07.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.157][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:07.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:07.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.161][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:07.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:07.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:07.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:07.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:07.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:07.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:07.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:07.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.180][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:07.181][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:07.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.183][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.184][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:07.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:07.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.195][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:07.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:07.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.199][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:07.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:07.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.202][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:07.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:07.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.206][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:07.207][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:07.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.208][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.209][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:07.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:07.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.221][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:02:07.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:07.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.224][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:07.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:07.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.228][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:07.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:07.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.231][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:02:07.232][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:07.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.234][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.235][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:02:07.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:07.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.246][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:07.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:07.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.250][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:07.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:07.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.253][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:07.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:07.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.257][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:07.258][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:07.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.259][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.260][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:07.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:07.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.271][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:07.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:07.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.275][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:07.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:07.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.278][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:07.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:07.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.281][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:07.282][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:07.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.284][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.284][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:07.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:07.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.295][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:07.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:07.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.299][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:07.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:07.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.302][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:07.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:07.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.306][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:07.307][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:07.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.308][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.309][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:07.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:07.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.320][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:02:07.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:07.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.323][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:07.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:07.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.327][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:07.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:07.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.330][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:02:07.331][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:07.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.342][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.343][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:02:07.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:07.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.352][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:02:07.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:07.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.355][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:07.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:07.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.358][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:07.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:07.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.361][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:02:07.362][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:07.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.363][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.364][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:02:07.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:07.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.374][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:07.375][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:07.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.376][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.380][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:07.381][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:07.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.382][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.387][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:07.387][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:07.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.389][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.393][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:07.394][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:07.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.395][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.399][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:07.400][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:07.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.402][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.406][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:07.407][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:07.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.408][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.412][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:07.413][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:07.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.414][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.418][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:07.419][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:07.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.421][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.427][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-916-content.xml".
biodb.DEBUG[2024-05-04 16:02:07.429][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-05-04 16:02:07.429][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-05-04 16:02:07.431][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:07.431][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:07.432][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:07.437][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:07.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:07.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:07.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:07.446][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:07.447][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:07.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.448][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:07.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:07.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.453][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:07.454][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:07.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.455][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.456][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:07.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:07.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.459][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:02:07.460][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:07.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.461][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.463][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:02:07.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:07.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.466][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:07.467][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:07.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.468][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.469][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:07.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:07.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.472][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:02:07.473][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:07.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.475][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.476][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:02:07.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:07.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.479][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:07.480][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:07.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.481][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.483][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:07.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:07.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:07.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:07.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.491][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:07.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:07.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:07.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:07.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:07.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:07.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.501][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:07.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:07.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:07.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:07.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:07.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:07.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:07.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:07.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:07.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:07.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:07.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:07.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:07.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:07.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:07.523][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 916.
biodb.TRACE[2024-05-04 16:02:07.525][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:07.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:07.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.528][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:07.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:07.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.531][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:07.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:07.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.534][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:07.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:07.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:07.537][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:07.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:07.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:07.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:07.540][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-05-04 16:02:07.541][private$loadEntries] Creating entries from ids [1]: "CCDS31685.1".
biodb.DEBUG[2024-05-04 16:02:07.542][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-04 16:02:07.543][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS31685.1".
biodb.TRACE[2024-05-04 16:02:07.544][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-04 16:02:07.545][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-04 16:02:07.545][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-05-04 16:02:07.546][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-05-04 16:02:07.547][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-04 16:02:07.548][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-05-04 16:02:07.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:07.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:07.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:07.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:07.556][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:07.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:07.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:07.559][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.DEBUG[2024-05-04 16:02:07.561][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:07.562][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:07.563][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.TRACE[2024-05-04 16:02:08.981][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1).
biodb.DEBUG[2024-05-04 16:02:10.155][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:02:10.157][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.content"
biodb.TRACE[2024-05-04 16:02:10.160][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.request"
biodb.TRACE[2024-05-04 16:02:10.162][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS31685.1.html"
biodb.DEBUG[2024-05-04 16:02:10.163][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-04 16:02:10.164][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-05-04 16:02:10.165][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-05-04 16:02:10.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:10.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:10.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:10.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:10.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:10.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:10.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:10.187][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.190][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:02:10.191][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:10.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.192][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.194][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:02:10.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:10.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.197][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:10.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:10.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.200][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:10.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:10.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.206][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:10.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:10.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.222][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:10.228][self$createEntryFromContent] Accession numbers: CCDS31685.1.
biodb.TRACE[2024-05-04 16:02:10.229][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:10.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:10.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.232][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:10.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:10.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.236][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:10.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:10.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.243][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:02:10.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:02:10.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.252][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:02:10.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:02:10.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.255][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-04 16:02:10.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-04 16:02:10.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.258][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-04 16:02:10.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-04 16:02:10.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.262][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.269][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:10.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:10.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.276][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.279][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.282][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.289][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.295][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:10.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:10.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.298][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:10.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:10.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.301][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:10.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:10.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.319][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.320][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.321][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.332][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:10.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:10.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.335][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:10.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:10.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.338][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:10.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:10.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.342][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:10.342][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:10.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.344][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.345][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:10.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:10.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.355][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:02:10.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:10.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.358][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:10.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:10.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.361][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:10.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:10.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.364][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:02:10.365][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:10.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.366][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.367][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:02:10.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:10.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.377][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:10.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:10.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.380][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:10.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:10.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.383][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:10.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:10.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.386][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:10.387][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:10.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.389][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.389][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:10.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:10.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.399][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:10.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:10.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:10.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:10.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.406][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:10.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:10.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.409][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:10.410][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:10.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.412][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.413][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:10.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:10.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.423][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:10.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:10.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.426][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:10.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:10.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.429][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:10.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:10.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.433][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:10.433][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:10.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.435][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.436][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:10.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:10.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.446][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:10.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:10.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.449][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:10.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:10.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.452][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:10.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:10.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.455][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:10.456][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:10.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.457][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.458][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:10.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:10.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.468][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:02:10.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:10.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.472][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:10.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:10.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.475][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:10.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:10.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.478][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:02:10.478][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:10.479][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.480][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.481][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-05-04 16:02:10.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:10.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.490][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:10.491][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:10.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.493][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.497][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:10.498][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:10.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.499][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.503][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.504][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.506][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.510][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:10.511][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:10.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.512][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.517][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:10.518][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:10.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.519][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.523][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:10.524][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:10.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.526][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.530][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:10.531][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:10.531][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.532][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.536][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:10.537][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:10.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.539][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.543][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-9606-content.xml".
biodb.DEBUG[2024-05-04 16:02:10.544][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-05-04 16:02:10.545][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-05-04 16:02:10.546][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:10.547][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:10.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:10.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:10.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:10.558][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:10.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:10.560][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.561][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.562][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.566][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:10.567][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:10.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.568][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.569][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:10.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:10.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.572][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:02:10.573][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:10.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.574][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.575][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:10.576][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:10.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.577][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.578][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:10.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:10.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.581][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:02:10.582][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:10.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.583][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.584][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:10.585][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:10.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.586][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.587][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:10.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:10.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.590][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:10.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:10.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.596][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:10.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:10.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.611][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.614][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:10.617][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 9606.
biodb.TRACE[2024-05-04 16:02:10.618][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:10.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:10.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.621][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:10.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:10.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.624][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:10.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:10.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.628][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:02:10.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:02:10.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.631][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:02:10.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:02:10.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.634][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-04 16:02:10.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-04 16:02:10.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.637][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-04 16:02:10.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-04 16:02:10.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.640][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.647][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:10.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:10.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.667][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.674][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:10.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:10.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.676][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:10.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:10.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.679][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:10.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:10.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.697][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.698][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.699][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.710][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:10.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:10.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.713][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:10.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:10.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.716][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:10.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:10.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.720][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:10.720][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:10.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.722][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.723][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:10.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:10.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.733][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:10.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:10.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.736][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:10.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:10.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.740][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:10.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:10.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.743][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:10.744][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:10.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.745][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.746][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:10.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:10.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.756][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:10.756][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:10.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.758][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.762][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:10.763][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:10.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.765][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:10.769][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:10.770][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:10.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:10.771][ef$get] fields variable is a list.
biodb.INFO [2024-05-04 16:02:10.779][biodb::testThat]
biodb.INFO [2024-05-04 16:02:10.779][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-05-04 16:02:10.780][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:02:10.781][biodb::testThat]
biodb.DEBUG[2024-05-04 16:02:10.783][private$loadEntries] Creating entries from ids [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.DEBUG[2024-05-04 16:02:10.784][conn$getEntryContent] Get NCBI Gene entry content(s) for 8 id(s)...
biodb.TRACE[2024-05-04 16:02:10.785][cch$loadFileContent] Trying to load 8 files from cache: [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.INFO [2024-05-04 16:02:10.786][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8" for "ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8".
biodb.TRACE[2024-05-04 16:02:10.787][cch$loadFileContent] file.exist = [8]: "FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE, FALSE".
biodb.TRACE[2024-05-04 16:02:10.788][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-04 16:02:10.789][conn$getEntryContent] 0 NCBI Gene entry content(s) loaded from cache.
biodb.DEBUG[2024-05-04 16:02:10.790][conn$getEntryContent] 8 entry content(s) need to be fetched from NCBI Gene database "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-04 16:02:10.790][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-04 16:02:10.791][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-04 16:02:10.792][private$retrieveContents] Get entry content(s) for 8 id(s)...
biodb.DEBUG[2024-05-04 16:02:10.797][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833%2C3002%2C3627%2C4316%2C50943%2C5551%2C916%2C9606&retmode=xml".
biodb.DEBUG[2024-05-04 16:02:10.799][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:10.800][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:10.800][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833%2C3002%2C3627%2C4316%2C50943%2C5551%2C916%2C9606&retmode=xml".
biodb.TRACE[2024-05-04 16:02:10.966][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833%2C3002%2C3627%2C4316%2C50943%2C5551%2C916%2C9606&retmode=xml does not exist.
biodb.TRACE[2024-05-04 16:02:10.967][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-04 16:02:10.968][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833%2C3002%2C3627%2C4316%2C50943%2C5551%2C916%2C9606&retmode=xml" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-04 16:02:10.969][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/efetch.fcgi?db=gene&id=2833%2C3002%2C3627%2C4316%2C50943%2C5551%2C916%2C9606&retmode=xml).
biodb.TRACE[2024-05-04 16:02:12.737][private$doSaveContentToFile] Saving to cache [8]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/2833.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3002.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3627.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/4316.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/50943.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/5551.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/916.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/9606.xml"
biodb.DEBUG[2024-05-04 16:02:12.765][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-04 16:02:12.766][self$createEntryFromContent] Creating NCBI Gene entries from 8 content(s).
biodb.DEBUG[2024-05-04 16:02:12.767][self$createEntryFromContent] Parsing 8 NCBI Gene entries.
biodb.DEBUG[2024-05-04 16:02:12.769][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:12.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:12.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:12.775][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:12.776][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:12.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:12.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:12.788][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:12.788][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:12.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.790][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:12.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:12.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.794][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:12.795][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:12.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.797][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.798][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:12.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:12.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.801][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:02:12.802][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:12.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.803][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.805][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:02:12.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:12.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.836][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:12.837][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:12.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.839][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.840][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:12.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:12.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.843][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:02:12.844][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:12.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.845][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.846][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:02:12.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:12.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.849][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:12.850][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:12.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.852][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.854][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:12.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:12.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.860][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:12.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:12.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.863][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:12.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:12.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.866][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:12.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:12.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:12.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:12.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.872][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:12.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:12.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:12.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:12.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:12.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:12.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:12.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:12.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:12.884][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:12.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:12.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:12.890][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:12.891][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:12.892][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:12.892][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:12.902][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:12.903][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:12.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.904][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.906][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:12.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:12.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.909][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:12.910][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:12.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.911][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.913][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:12.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:12.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.916][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:02:12.917][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:12.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.918][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.920][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:02:12.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:12.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.923][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:12.924][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:12.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.925][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.926][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:12.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:12.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.929][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:02:12.930][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:12.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.932][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.933][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:02:12.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:12.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.937][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:12.937][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:12.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.939][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.941][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:12.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:12.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.947][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:12.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:12.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.950][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:12.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:12.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.953][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:12.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:12.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:12.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:12.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.959][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:12.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:12.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.962][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:12.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:12.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.965][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:12.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:12.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:12.968][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:12.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:12.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:12.971][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:12.972][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:12.972][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:12.977][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:12.978][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:12.979][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:12.979][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:12.995][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:12.996][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:12.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:12.998][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.000][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.003][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:13.004][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:13.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.006][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.008][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:13.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:13.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.011][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:02:13.012][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:13.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.013][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.015][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:02:13.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:13.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.019][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:13.019][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:13.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.021][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.023][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:13.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:13.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.026][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:02:13.027][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:13.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.028][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.030][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:02:13.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:13.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.033][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:13.034][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:13.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.035][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.039][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:13.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:13.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.044][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:13.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:13.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.047][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.050][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.057][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.060][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.067][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:13.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:13.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:13.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:13.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:13.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:13.077][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:13.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:13.091][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.092][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.094][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.099][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:13.100][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:13.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.101][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.103][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:13.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:13.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.106][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:02:13.107][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:13.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.108][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.110][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:02:13.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:13.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.113][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:13.114][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:13.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.115][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.117][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:13.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:13.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.120][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:02:13.121][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:13.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.122][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.124][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:02:13.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:13.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.127][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:13.128][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:13.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.130][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.133][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:13.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:13.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.137][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:13.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:13.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.140][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.144][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.150][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:13.162][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:13.163][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:13.164][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:13.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:13.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:13.170][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:13.171][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:13.199][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.200][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.201][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.221][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:13.222][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:13.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.223][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.226][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:13.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:13.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.229][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:02:13.230][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:13.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.231][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.234][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:02:13.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:13.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.237][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:13.238][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:13.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.239][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.242][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:13.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:13.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.245][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:02:13.246][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:13.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.247][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.249][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:02:13.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:13.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.252][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:13.253][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:13.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.255][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.260][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:13.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:13.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.269][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:13.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:13.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.272][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.275][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.284][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:13.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:13.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:13.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:13.300][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:13.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:13.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:13.302][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:13.311][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.312][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.313][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.318][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:13.319][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:13.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.320][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.322][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:13.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:13.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.325][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:02:13.326][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:13.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.328][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.329][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:02:13.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:13.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.332][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:13.333][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:13.334][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.335][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.336][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:13.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:13.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.339][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:02:13.340][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:13.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.342][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.343][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:02:13.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:13.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.347][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:13.348][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:13.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.349][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.351][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:13.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:13.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.356][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:13.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:13.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.360][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.363][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.369][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.376][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:13.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:13.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:13.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:13.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:13.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:13.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:13.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:13.400][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.401][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.403][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.407][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:13.408][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:13.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.410][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.411][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:13.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:13.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.414][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:02:13.415][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:13.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.416][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.418][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:02:13.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:13.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.421][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:13.422][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:13.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.423][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.425][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:13.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:13.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.428][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:02:13.429][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:13.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.430][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.432][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:02:13.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:13.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.435][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:13.436][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:13.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.437][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.439][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:13.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:13.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.444][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:13.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:13.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.447][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.456][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:13.468][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:13.469][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:13.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:13.474][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:13.475][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:13.476][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:13.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:13.479][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.480][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.481][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.482][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.485][ef$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:13.486][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:13.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.488][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.489][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-05-04 16:02:13.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-05-04 16:02:13.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.492][ef$get] Asked field names are: location.
biodb.TRACE[2024-05-04 16:02:13.493][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-05-04 16:02:13.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.494][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.495][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:13.496][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:13.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.498][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.499][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-05-04 16:02:13.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-05-04 16:02:13.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.502][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:02:13.503][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:13.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.504][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.505][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:13.506][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-05-04 16:02:13.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.508][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.509][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.512][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.515][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.519][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-05-04 16:02:13.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.526][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.542][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.568][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.577][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.580][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.595][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.604][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:13.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:13.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:13.613][self$createEntryFromContent] Accession numbers: 2833, 3002, 3627, 4316, 50943, 5551, 916, 9606.
biodb.TRACE[2024-05-04 16:02:13.614][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-04 16:02:13.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-04 16:02:13.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.617][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-04 16:02:13.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-04 16:02:13.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.620][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-04 16:02:13.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-04 16:02:13.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.627][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-04 16:02:13.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-04 16:02:13.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-04 16:02:13.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-04 16:02:13.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.633][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-04 16:02:13.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-04 16:02:13.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.640][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-04 16:02:13.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-04 16:02:13.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.644][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-04 16:02:13.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-04 16:02:13.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.647][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-04 16:02:13.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-04 16:02:13.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.654][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-04 16:02:13.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-04 16:02:13.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.657][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-04 16:02:13.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-04 16:02:13.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.660][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-04 16:02:13.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-04 16:02:13.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.667][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-04 16:02:13.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-04 16:02:13.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.671][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-04 16:02:13.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-04 16:02:13.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.674][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-04 16:02:13.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-04 16:02:13.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.681][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-04 16:02:13.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-04 16:02:13.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.684][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-04 16:02:13.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-04 16:02:13.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.687][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-04 16:02:13.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-04 16:02:13.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.694][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-04 16:02:13.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-04 16:02:13.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.697][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-04 16:02:13.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-04 16:02:13.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.700][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-04 16:02:13.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-04 16:02:13.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.707][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-04 16:02:13.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-04 16:02:13.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.711][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-04 16:02:13.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-04 16:02:13.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-04 16:02:13.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-04 16:02:13.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-04 16:02:13.723][biodb::testThat]
biodb.INFO [2024-05-04 16:02:13.724][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-05-04 16:02:13.725][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:02:13.725][biodb::testThat]
biodb.TRACE[2024-05-04 16:02:13.728][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:13.729][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:13.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.730][ef$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:13.731][function(conn, opt)] Testing searchForEntries() with entry "2833" and field "name".
biodb.TRACE[2024-05-04 16:02:13.743][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:13.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:13.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.747][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:13.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:13.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:13.750][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:13.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:13.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:13.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:13.755][function(conn, opt)] With value "GPR9".
biodb.DEBUG[2024-05-04 16:02:13.760][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2024-05-04 16:02:13.762][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:13.763][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:13.765][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1".
biodb.TRACE[2024-05-04 16:02:13.888][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1 does not exist.
biodb.TRACE[2024-05-04 16:02:13.889][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-04 16:02:13.890][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-04 16:02:13.891][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term=%22GPR9%22%5BGene%20Name%5D&retmax=1).
biodb.DEBUG[2024-05-04 16:02:13.978][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:02:13.980][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content"
biodb.TRACE[2024-05-04 16:02:13.983][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.request"
biodb.DEBUG[2024-05-04 16:02:13.985][function(conn, opt)] With found IDs [1]: "2833".
biodb.INFO [2024-05-04 16:02:13.999][biodb::testThat]
biodb.INFO [2024-05-04 16:02:14.000][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-05-04 16:02:14.000][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:02:14.001][biodb::testThat]
biodb.TRACE[2024-05-04 16:02:14.011][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:14.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:14.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:14.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:14.014][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:14.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:14.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:14.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:14.017][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:14.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:14.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:14.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:14.058][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2024-05-04 16:02:14.060][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:02:14.061][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2024-05-04 16:02:14.062][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:02:14.063][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.INFO [2024-05-04 16:02:14.078][biodb::testThat]
biodb.INFO [2024-05-04 16:02:14.078][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-05-04 16:02:14.079][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:02:14.080][biodb::testThat]
biodb.TRACE[2024-05-04 16:02:14.088][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:14.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:14.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:14.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:14.091][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:14.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:14.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:14.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:14.095][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:14.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:14.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:14.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:14.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:14.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:14.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:14.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:14.101][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:14.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:14.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:14.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:14.104][private$computeField] Compute value for field "aa.seq".
biodb.TRACE[2024-05-04 16:02:14.105][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:14.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:14.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:14.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:14.108][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:14.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:14.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:14.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:14.111][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:14.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:14.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:14.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:14.114][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:02:14.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:02:14.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:14.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:14.117][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:02:14.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:02:14.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:14.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:14.120][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-04 16:02:14.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-04 16:02:14.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:14.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:14.124][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-04 16:02:14.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-04 16:02:14.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:14.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:14.128][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:14.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:14.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:14.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:14.131][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:14.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:14.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:14.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:14.134][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:02:14.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:02:14.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:14.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:14.137][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:02:14.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:02:14.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:14.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:14.140][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-04 16:02:14.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-04 16:02:14.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:14.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:14.143][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-04 16:02:14.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-04 16:02:14.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:14.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-04 16:02:14.151][biodb::testThat]
biodb.INFO [2024-05-04 16:02:14.152][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-05-04 16:02:14.153][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:02:14.153][biodb::testThat]
biodb.INFO [2024-05-04 16:02:14.163][biodb::testThat]
biodb.INFO [2024-05-04 16:02:14.164][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-05-04 16:02:14.164][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:02:14.165][biodb::testThat]
biodb.INFO [2024-05-04 16:02:14.172][biodb::testThat]
biodb.INFO [2024-05-04 16:02:14.172][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-05-04 16:02:14.173][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:02:14.174][biodb::testThat]
biodb.DEBUG[2024-05-04 16:02:14.177][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/gene?term=2833".
biodb.DEBUG[2024-05-04 16:02:16.980][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/gene?term=2833.
biodb.INFO [2024-05-04 16:02:19.787][biodb::testThat]
biodb.INFO [2024-05-04 16:02:19.788][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-05-04 16:02:19.789][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:02:19.790][biodb::testThat]
biodb.INFO [2024-05-04 16:02:19.796][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-05-04 16:02:19.797][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.gene from the request scheduler
biodb.INFO [2024-05-04 16:02:19.798][self$deleteConn] Connector "ncbi.gene" deleted.
biodb.DEBUG[2024-05-04 16:02:19.799][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2024-05-04 16:02:19.805][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2024-05-04 16:02:19.806][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-05-04 16:02:19.806][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:19.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:19.808][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:19.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:19.809][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:19.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-05-04 16:02:19.813][biodb::testContext]
biodb.INFO [2024-05-04 16:02:19.814][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-04 16:02:19.815][biodb::testContext] Test context - Pubchem comp long tests
biodb.INFO [2024-05-04 16:02:19.816][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-04 16:02:19.816][biodb::testContext]
biodb.INFO [2024-05-04 16:02:19.818][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-05-04 16:02:19.820][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-05-04 16:02:19.823][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-04 16:02:19.824][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-05-04 16:02:19.825][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-05-04 16:02:19.826][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:19.826][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:19.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:19.828][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-05-04 16:02:19.829][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-05-04 16:02:19.829][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:19.830][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:19.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:19.832][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-05-04 16:02:19.833][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-05-04 16:02:19.833][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:19.834][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:19.835][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:19.836][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-05-04 16:02:19.836][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-05-04 16:02:19.837][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-05-04 16:02:19.838][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:19.839][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:19.839][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:19.840][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-05-04 16:02:19.841][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-05-04 16:02:19.842][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-05-04 16:02:19.842][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:19.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:19.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:19.845][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-05-04 16:02:19.846][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-05-04 16:02:19.846][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:19.847][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:19.848][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:19.848][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-05-04 16:02:19.849][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-05-04 16:02:19.850][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-05-04 16:02:19.851][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:19.852][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:19.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:19.853][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-05-04 16:02:19.854][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-05-04 16:02:19.855][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:19.855][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:19.856][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:19.857][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-05-04 16:02:19.858][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-05-04 16:02:19.859][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-05-04 16:02:19.859][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:19.860][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:19.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:19.861][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-05-04 16:02:19.862][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-05-04 16:02:19.863][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-05-04 16:02:19.864][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-05-04 16:02:19.865][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-05-04 16:02:19.866][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-05-04 16:02:19.866][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:19.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:19.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:19.868][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-05-04 16:02:19.869][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-05-04 16:02:19.870][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:19.871][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:19.872][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:19.872][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-05-04 16:02:19.873][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-05-04 16:02:19.874][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:19.874][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:19.875][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:19.876][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-05-04 16:02:19.877][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-05-04 16:02:19.877][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:19.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:19.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:19.880][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-05-04 16:02:19.881][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-05-04 16:02:19.881][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:19.882][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:19.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:19.884][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-05-04 16:02:19.884][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-05-04 16:02:19.885][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:19.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:19.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:19.887][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-05-04 16:02:19.888][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-05-04 16:02:19.907][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-05-04 16:02:19.908][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:19.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:19.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:19.910][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-05-04 16:02:19.911][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-05-04 16:02:19.912][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-05-04 16:02:19.912][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:19.913][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:19.914][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:19.915][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-05-04 16:02:19.916][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-04 16:02:19.917][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-05-04 16:02:19.918][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:19.919][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:02:19.920][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:19.920][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:02:19.921][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-04 16:02:19.922][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:02:19.923][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-04 16:02:19.924][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:02:19.924][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:19.925][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-05-04 16:02:19.926][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:02:19.927][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:19.928][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:19.929][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-04 16:02:19.929][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-04 16:02:19.929][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-04 16:02:19.929][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-04 16:02:19.929][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-04 16:02:19.930][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-04 16:02:19.930][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:02:19.931][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:02:19.932][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:02:19.933][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:02:19.933][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:02:19.934][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:02:19.935][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:19.936][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:02:19.937][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:02:19.937][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-04 16:02:19.938][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:19.939][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-05-04 16:02:19.941][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-04 16:02:19.942][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-05-04 16:02:19.942][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:19.943][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:02:19.944][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:19.945][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:02:19.946][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-04 16:02:19.947][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:02:19.947][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-04 16:02:19.948][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:02:19.949][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:19.950][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-05-04 16:02:19.951][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:02:19.951][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:19.952][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:19.953][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-04 16:02:19.953][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-04 16:02:19.953][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-04 16:02:19.953][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-04 16:02:19.953][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-04 16:02:19.954][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-04 16:02:19.955][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:02:19.956][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:02:19.956][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:02:19.957][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:02:19.958][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:02:19.959][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:02:19.960][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:19.960][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:02:19.961][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:02:19.962][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-04 16:02:19.963][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:19.964][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-05-04 16:02:19.965][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:19.966][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-05-04 16:02:19.976][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:19.988][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:02:19.989][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:19.990][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:02:19.991][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-04 16:02:19.992][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:02:19.992][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-04 16:02:19.993][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:02:19.994][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-04 16:02:19.995][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-05-04 16:02:19.995][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:02:19.996][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:19.997][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:19.998][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:19.998][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-04 16:02:19.999][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:02:20.000][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:02:20.001][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:02:20.001][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:02:20.002][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:02:20.003][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:02:20.003][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:20.004][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:02:20.005][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:02:20.006][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-04 16:02:20.006][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:20.007][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-05-04 16:02:20.008][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:20.009][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-05-04 16:02:20.010][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:20.011][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:02:20.011][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:20.012][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:02:20.013][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-04 16:02:20.014][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:02:20.015][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-04 16:02:20.015][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:02:20.016][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-04 16:02:20.017][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-05-04 16:02:20.018][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:02:20.018][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:20.019][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:20.020][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:20.021][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-04 16:02:20.021][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:02:20.022][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:02:20.023][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:02:20.023][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:02:20.024][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:02:20.025][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:02:20.026][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:20.026][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:02:20.027][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:02:20.028][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-04 16:02:20.029][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:20.030][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-04 16:02:20.030][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.032][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:20.032][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.033][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.035][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.035][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:20.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.038][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.039][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:20.040][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.040][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.042][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.043][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:20.043][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.044][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.045][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.046][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:20.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.047][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.048][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.049][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.050][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:20.050][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.051][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.052][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.052][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.053][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:20.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.055][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.055][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.057][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:20.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.059][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.060][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:20.061][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.063][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:20.064][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.067][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:20.068][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.069][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.071][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:20.071][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.072][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.073][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.074][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.074][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:20.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.076][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.076][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.078][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:20.078][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.080][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.081][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:20.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.083][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.085][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:20.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.088][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:20.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.090][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.092][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-05-04 16:02:20.093][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-05-04 16:02:20.094][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-05-04 16:02:20.095][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-05-04 16:02:20.096][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-05-04 16:02:20.097][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-04 16:02:20.098][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-05-04 16:02:20.100][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-05-04 16:02:20.101][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-05-04 16:02:20.102][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-04 16:02:20.103][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-04 16:02:20.104][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-05-04 16:02:20.105][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-05-04 16:02:20.106][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-05-04 16:02:20.107][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-04 16:02:20.108][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-04 16:02:20.109][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-05-04 16:02:20.111][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-05-04 16:02:20.112][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-05-04 16:02:20.113][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-05-04 16:02:20.114][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-05-04 16:02:20.115][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-05-04 16:02:20.116][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-05-04 16:02:20.117][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-05-04 16:02:20.118][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-05-04 16:02:20.119][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-05-04 16:02:20.121][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-05-04 16:02:20.122][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-05-04 16:02:20.123][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-05-04 16:02:20.124][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-05-04 16:02:20.125][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-05-04 16:02:20.126][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-05-04 16:02:20.127][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-05-04 16:02:20.128][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-05-04 16:02:20.129][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-05-04 16:02:20.130][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-05-04 16:02:20.132][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-05-04 16:02:20.133][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-05-04 16:02:20.134][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-05-04 16:02:20.135][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-05-04 16:02:20.136][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-05-04 16:02:20.137][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-05-04 16:02:20.138][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-05-04 16:02:20.139][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-05-04 16:02:20.140][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-05-04 16:02:20.141][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-04 16:02:20.143][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-05-04 16:02:20.144][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-05-04 16:02:20.145][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-05-04 16:02:20.146][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-05-04 16:02:20.147][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-05-04 16:02:20.148][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-05-04 16:02:20.149][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-05-04 16:02:20.150][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-05-04 16:02:20.152][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-05-04 16:02:20.153][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-05-04 16:02:20.154][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-05-04 16:02:20.155][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-05-04 16:02:20.156][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-05-04 16:02:20.157][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-05-04 16:02:20.158][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-05-04 16:02:20.159][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-05-04 16:02:20.160][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-05-04 16:02:20.162][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-05-04 16:02:20.163][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-05-04 16:02:20.164][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-05-04 16:02:20.165][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-05-04 16:02:20.166][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-05-04 16:02:20.167][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-05-04 16:02:20.168][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-05-04 16:02:20.169][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-05-04 16:02:20.170][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-05-04 16:02:20.171][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-05-04 16:02:20.172][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-05-04 16:02:20.173][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-05-04 16:02:20.174][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-05-04 16:02:20.176][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-05-04 16:02:20.177][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-05-04 16:02:20.178][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-05-04 16:02:20.179][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-05-04 16:02:20.180][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-05-04 16:02:20.181][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-05-04 16:02:20.182][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-05-04 16:02:20.183][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-05-04 16:02:20.184][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-05-04 16:02:20.185][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-04 16:02:20.186][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.187][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.187][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.188][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.189][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:20.189][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:20.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:20.191][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.192][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.194][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:20.194][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:20.195][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:20.196][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.197][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.198][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:20.199][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:20.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:20.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.201][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.204][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:20.204][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:20.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:20.206][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.207][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.209][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:20.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:20.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:20.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.212][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.214][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:20.214][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:20.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:20.216][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.217][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.218][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:20.219][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:20.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:20.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.221][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.222][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.223][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.223][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:20.224][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:20.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:20.225][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.227][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.228][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.228][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:20.229][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:20.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:20.230][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.232][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.233][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:20.234][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:20.234][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:20.235][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.236][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.237][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:20.238][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:20.239][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:20.240][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.240][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.241][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.242][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.242][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:20.243][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:20.244][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:20.244][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.245][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.246][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.247][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:20.248][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:20.249][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:20.249][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.250][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.252][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:20.253][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:20.253][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:20.254][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.262][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:20.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:20.263][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:20.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.265][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.266][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.267][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:20.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:20.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:20.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.271][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:20.272][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:20.273][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:20.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.274][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:20.277][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-05-04 16:02:20.279][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-05-04 16:02:20.280][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:20.281][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-05-04 16:02:20.282][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:20.283][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:02:20.283][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:20.284][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:02:20.285][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:20.286][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:02:20.286][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-05-04 16:02:20.287][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:02:20.288][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:20.289][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-05-04 16:02:20.289][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:02:20.290][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-05-04 16:02:20.290][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-05-04 16:02:20.291][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-04 16:02:20.292][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:20.292][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-04 16:02:20.293][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:02:20.294][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:02:20.295][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:02:20.295][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:02:20.296][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:02:20.297][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:02:20.298][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-05-04 16:02:20.298][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-05-04 16:02:20.299][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:02:20.299][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:02:20.300][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:20.301][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:20.302][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-05-04 16:02:20.303][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:20.304][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-05-04 16:02:20.305][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:20.305][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:02:20.306][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:20.307][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:02:20.308][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:20.308][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:02:20.309][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-04 16:02:20.310][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:02:20.311][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:20.311][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-05-04 16:02:20.312][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:02:20.313][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-05-04 16:02:20.313][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-05-04 16:02:20.313][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-05-04 16:02:20.313][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-05-04 16:02:20.313][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-05-04 16:02:20.313][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-05-04 16:02:20.314][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-04 16:02:20.315][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-04 16:02:20.315][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-04 16:02:20.316][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:02:20.317][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:02:20.317][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:02:20.318][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:02:20.319][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:02:20.320][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:02:20.320][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-04 16:02:20.320][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-04 16:02:20.321][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:02:20.322][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:02:20.322][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:20.323][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:20.324][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-05-04 16:02:20.326][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-04 16:02:20.326][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-05-04 16:02:20.327][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:20.328][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:02:20.328][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:20.329][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:02:20.330][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:20.331][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:02:20.331][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-04 16:02:20.332][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:02:20.333][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:20.334][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-05-04 16:02:20.334][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:02:20.335][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-05-04 16:02:20.335][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:02:20.335][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:02:20.335][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:02:20.335][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:02:20.335][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:02:20.335][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:02:20.335][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:02:20.335][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:02:20.335][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:02:20.335][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-05-04 16:02:20.335][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:02:20.335][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:02:20.335][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:02:20.336][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-04 16:02:20.337][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-04 16:02:20.337][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-04 16:02:20.337][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-04 16:02:20.338][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-05-04 16:02:20.338][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:02:20.339][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:02:20.340][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:02:20.340][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:02:20.341][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:02:20.342][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:02:20.343][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-04 16:02:20.343][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-04 16:02:20.343][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-05-04 16:02:20.343][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:02:20.344][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:02:20.345][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:20.345][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-05-04 16:02:20.346][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-05-04 16:02:20.348][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:20.348][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-05-04 16:02:20.349][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:20.350][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:02:20.351][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:20.351][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:02:20.352][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:20.353][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:02:20.354][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-04 16:02:20.354][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:02:20.355][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:20.356][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-05-04 16:02:20.357][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:02:20.357][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-05-04 16:02:20.357][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-05-04 16:02:20.358][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-04 16:02:20.359][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:20.360][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-05-04 16:02:20.360][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:02:20.361][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:02:20.362][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:02:20.363][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:02:20.363][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:02:20.364][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:02:20.365][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-04 16:02:20.365][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-04 16:02:20.365][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-05-04 16:02:20.365][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:02:20.366][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:02:20.367][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:20.368][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-05-04 16:02:20.369][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-05-04 16:02:20.370][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-04 16:02:20.371][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-04 16:02:20.372][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-05-04 16:02:20.373][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-04 16:02:20.374][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-05-04 16:02:20.381][super$initialize] Initialize connector ncbi.pubchem.comp.
biodb.DEBUG[2024-05-04 16:02:20.381][super$initialize] Register connector ncbi.pubchem.comp with the request scheduler
biodb.DEBUG[2024-05-04 16:02:20.382][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.comp.
biodb.DEBUG[2024-05-04 16:02:20.383][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2024-05-04 16:02:20.384][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-05-04 16:02:20.385][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-05-04 16:02:20.386][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2024-05-04 16:02:20.387][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-05-04 16:02:20.388][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-05-04 16:02:20.389][rule$addConnector] Connector "ncbi.pubchem.comp" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-05-04 16:02:20.393][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.comp for database class ncbi.pubchem.comp .
biodb.INFO [2024-05-04 16:02:20.396][biodb::testThat]
biodb.INFO [2024-05-04 16:02:20.397][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-05-04 16:02:20.398][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:02:20.398][biodb::testThat]
biodb.TRACE[2024-05-04 16:02:20.400][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-2-content.xml".
biodb.DEBUG[2024-05-04 16:02:20.401][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-05-04 16:02:20.404][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-05-04 16:02:20.405][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:20.406][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:20.407][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:20.411][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:20.412][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:20.413][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:20.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:20.417][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:20.418][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:20.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.419][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:20.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:20.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.424][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:20.424][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:20.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.426][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:20.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:20.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.430][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:20.431][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:20.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.432][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:20.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:20.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.437][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:20.438][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:20.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.439][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:20.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:20.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.443][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:20.444][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:20.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.446][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:20.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:20.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.450][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:20.451][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:20.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.452][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:20.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:20.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.456][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:20.457][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:20.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.458][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.459][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:20.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:20.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.462][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:20.463][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:20.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.465][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.466][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:20.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:20.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.469][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:20.470][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:20.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.471][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.472][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:20.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:20.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.475][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:20.476][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:20.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.477][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.478][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:20.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:20.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.481][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:20.482][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:20.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.484][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.485][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:20.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:20.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.488][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:20.489][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:20.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.490][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:20.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:20.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.495][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:20.496][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:20.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.497][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.498][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:20.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:20.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.502][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:20.503][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:20.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.504][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.505][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:20.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:20.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.508][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-04 16:02:20.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:20.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:20.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:20.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.515][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:20.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:20.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.518][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-04 16:02:20.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:20.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:20.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:20.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:20.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:20.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.529][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-04 16:02:20.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:20.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:20.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:20.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:20.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:20.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.548][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-04 16:02:20.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:20.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.551][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:20.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:20.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:20.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:20.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.557][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-04 16:02:20.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:20.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.560][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:20.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:20.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.563][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:20.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:20.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.566][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:20.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:20.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.569][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:20.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:20.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.572][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:20.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:20.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.575][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:20.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:20.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.578][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:20.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:20.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:20.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:20.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:20.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:20.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:20.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:20.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.591][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:20.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:20.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:20.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:20.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:20.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:20.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:20.600][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2.
biodb.TRACE[2024-05-04 16:02:20.602][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:20.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:20.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.605][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:20.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:20.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.608][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:20.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:20.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.611][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:02:20.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:02:20.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.614][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:02:20.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:02:20.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.617][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-04 16:02:20.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-04 16:02:20.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.620][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-04 16:02:20.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-04 16:02:20.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.624][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:20.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:20.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.631][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:20.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:20.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.638][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:20.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:20.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:20.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:20.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:20.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:20.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:20.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:20.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.652][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:20.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:20.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:20.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:20.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.658][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:20.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:20.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.661][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:20.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:20.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.664][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:20.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:20.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.673][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:20.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:20.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:20.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:20.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:20.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:20.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.683][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:20.683][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:20.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.685][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:20.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:20.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.696][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:20.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:20.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:20.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:20.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:20.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:20.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.706][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:20.707][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:20.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.708][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.709][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:20.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:20.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.719][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:20.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:20.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.722][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:20.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:20.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.725][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:20.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:20.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.729][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:20.729][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:20.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.731][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.732][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:20.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:20.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.742][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:20.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:20.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.745][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:20.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:20.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.748][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:20.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:20.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.751][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:20.752][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:20.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.754][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.754][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:20.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:20.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.764][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:20.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:20.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.768][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:20.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:20.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.771][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:20.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:20.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.774][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:20.775][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:20.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.776][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.777][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:20.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:20.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.787][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:20.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:20.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.790][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:20.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:20.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.793][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:20.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:20.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.796][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:20.797][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:20.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.798][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.799][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:20.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:20.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.809][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:20.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:20.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.812][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:20.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:20.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.815][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:20.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:20.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.818][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:20.819][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:20.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.821][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.821][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:20.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:20.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.837][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:20.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:20.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.840][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:20.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:20.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:20.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:20.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.846][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:20.847][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:20.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.848][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:20.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:20.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:20.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:20.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:20.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:20.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.865][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:20.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:20.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.868][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:20.869][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:20.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.871][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:20.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:20.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:20.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:20.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.885][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:20.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:20.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:20.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:20.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.891][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:20.892][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:20.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.893][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.894][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:20.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:20.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:20.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:20.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.907][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:20.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:20.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:20.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:20.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.913][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:20.914][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:20.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.915][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.916][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:20.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:20.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:20.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:20.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:20.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:20.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.933][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:20.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:20.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.936][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:20.937][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:20.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.939][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.940][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:20.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:20.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.950][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:20.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:20.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.953][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:20.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:20.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.956][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:20.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:20.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.959][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:20.960][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:20.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.961][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.962][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:20.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:20.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:20.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:20.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.976][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:20.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:20.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.979][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:20.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:20.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.982][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:20.983][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:20.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.985][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.986][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:20.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:20.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:20.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:20.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:20.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:20.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:21.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:21.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.003][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:21.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:21.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.006][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:21.007][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:21.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.008][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.009][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:21.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:21.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.020][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:21.021][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:21.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.022][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.027][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:21.028][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:21.028][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.029][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.034][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:21.035][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:21.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.036][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.041][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:21.042][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:21.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.043][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.048][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:21.049][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:21.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.050][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.055][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:21.056][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:21.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.057][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.062][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:21.063][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:21.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.064][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.069][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:21.070][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:21.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.072][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.076][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:21.077][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:21.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.079][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.083][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:21.084][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:21.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.085][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.090][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:21.090][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:21.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.092][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.096][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:21.097][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:21.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.099][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.103][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:21.104][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:21.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.105][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.110][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:21.111][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:21.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.112][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.117][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:21.117][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:21.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.119][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.124][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-65124-content.xml".
biodb.DEBUG[2024-05-04 16:02:21.125][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-05-04 16:02:21.126][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-05-04 16:02:21.127][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:21.128][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:21.129][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:21.139][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:21.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:21.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:21.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:21.144][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:21.145][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:21.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.146][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:21.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:21.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.150][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:21.151][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:21.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.152][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.153][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:21.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:21.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.156][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:21.157][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:21.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.159][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.160][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:21.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:21.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.163][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:21.164][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:21.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.165][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:21.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:21.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.169][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:21.170][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:21.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.171][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.172][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:21.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:21.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.176][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:21.176][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:21.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.178][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:21.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:21.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.182][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:21.183][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:21.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.184][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.185][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:21.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:21.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.189][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:21.189][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:21.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.191][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.192][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:21.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:21.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.195][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:21.196][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:21.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.198][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:21.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:21.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.202][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:21.203][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:21.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.204][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:21.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:21.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.208][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:21.209][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:21.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.211][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.212][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:21.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:21.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.215][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:21.216][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:21.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.217][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.218][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:21.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:21.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.222][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:21.223][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:21.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.224][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.225][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:21.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:21.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.228][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:21.229][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:21.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.231][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.232][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:21.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:21.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.235][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-04 16:02:21.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:21.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:21.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:21.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:21.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:21.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.244][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-04 16:02:21.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:21.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.247][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:21.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:21.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:21.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:21.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.253][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-04 16:02:21.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:21.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.256][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:21.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:21.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.259][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:21.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:21.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.263][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-04 16:02:21.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:21.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.266][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:21.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:21.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:21.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:21.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.272][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-04 16:02:21.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:21.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:21.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:21.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:21.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:21.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.282][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:21.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:21.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.286][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:21.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:21.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.289][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:21.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:21.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.292][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:21.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:21.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.295][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:21.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:21.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.298][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:21.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:21.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:21.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:21.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:21.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:21.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:21.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:21.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:21.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:21.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:21.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:21.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:21.317][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 65124.
biodb.TRACE[2024-05-04 16:02:21.319][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:21.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:21.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.321][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:21.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:21.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.324][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:21.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:21.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.328][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:02:21.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:02:21.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.330][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:02:21.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:02:21.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.334][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-04 16:02:21.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-04 16:02:21.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.337][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-04 16:02:21.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-04 16:02:21.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.341][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:21.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:21.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.348][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:21.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:21.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:21.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:21.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:21.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:21.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:21.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:21.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:21.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:21.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.368][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:21.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:21.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.371][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:21.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:21.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:21.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:21.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:21.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:21.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:21.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:21.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.390][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:21.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:21.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:21.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:21.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.396][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:21.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:21.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.399][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:21.400][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:21.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.402][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.402][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:21.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:21.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:21.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:21.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.420][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:21.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:21.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.423][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:21.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:21.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.426][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:21.427][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:21.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.428][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.429][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:21.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:21.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.439][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:21.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:21.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.442][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:21.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:21.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.445][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:21.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:21.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.448][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:21.449][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:21.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.450][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.451][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:21.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:21.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.461][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:21.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:21.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.465][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:21.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:21.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.468][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:21.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:21.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.471][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:21.472][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:21.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.473][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.474][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:21.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:21.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.484][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:21.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:21.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.488][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:21.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:21.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.491][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:21.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:21.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.494][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:21.495][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:21.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.496][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.497][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:21.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:21.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.507][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:21.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:21.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.510][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:21.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:21.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.514][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:21.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:21.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.517][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:21.518][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:21.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.519][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.520][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:21.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:21.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.530][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:21.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:21.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.533][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:21.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:21.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.537][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:21.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:21.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.540][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:21.541][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:21.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.542][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.543][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:21.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:21.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.553][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:21.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:21.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:21.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:21.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:21.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:21.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.562][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:21.563][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:21.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.565][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.565][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:21.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:21.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.576][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:21.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:21.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.579][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:21.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:21.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.582][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:21.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:21.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.585][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:21.586][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:21.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.587][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.588][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:21.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:21.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.598][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:21.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:21.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:21.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:21.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:21.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:21.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.608][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:21.609][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:21.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.610][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:21.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:21.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.621][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:21.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:21.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.624][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:21.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:21.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:21.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:21.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.630][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:21.631][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:21.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.633][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:21.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:21.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:21.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:21.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:21.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:21.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.650][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:21.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:21.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.653][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:21.654][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:21.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.655][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.656][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:21.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:21.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.667][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:21.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:21.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:21.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:21.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.673][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:21.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:21.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.677][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:21.677][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:21.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.679][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.680][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:21.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:21.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:21.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:21.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:21.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:21.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:21.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:21.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.699][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:21.700][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:21.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.702][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:21.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:21.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.718][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:21.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:21.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.721][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:21.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:21.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.724][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:21.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:21.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.727][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:21.728][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:21.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.729][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.730][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:21.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:21.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.740][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:21.741][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:21.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.742][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.746][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:21.747][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:21.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.748][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.753][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:21.754][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:21.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.755][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.759][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:21.760][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:21.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.762][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.766][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:21.767][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:21.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.768][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.772][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:21.773][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:21.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.775][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.779][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:21.780][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:21.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.781][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.785][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:21.786][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:21.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.788][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.792][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:21.792][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:21.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.794][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.798][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:21.799][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:21.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.800][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.804][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:21.805][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:21.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.806][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.810][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:21.811][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:21.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.813][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.817][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:21.818][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:21.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.819][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.824][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:21.824][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:21.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.826][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:21.830][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:21.831][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:21.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:21.832][ef$get] fields variable is a list.
biodb.INFO [2024-05-04 16:02:21.839][biodb::testThat]
biodb.INFO [2024-05-04 16:02:21.839][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-05-04 16:02:21.840][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:02:21.841][biodb::testThat]
biodb.DEBUG[2024-05-04 16:02:21.842][private$loadEntries] Creating entries from ids [2]: "2, 65124".
biodb.DEBUG[2024-05-04 16:02:21.844][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-05-04 16:02:21.845][cch$loadFileContent] Trying to load 2 files from cache: [2]: "2, 65124".
biodb.INFO [2024-05-04 16:02:21.846][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75" for "ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75".
biodb.TRACE[2024-05-04 16:02:21.847][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-05-04 16:02:21.848][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-04 16:02:21.849][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-04 16:02:21.850][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-04 16:02:21.850][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-04 16:02:21.851][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-04 16:02:21.852][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-05-04 16:02:21.854][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/2,65124/XML".
biodb.DEBUG[2024-05-04 16:02:21.855][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:21.856][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:21.857][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/2,65124/XML".
biodb.TRACE[2024-05-04 16:02:22.070][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/2,65124/XML).
biodb.TRACE[2024-05-04 16:02:22.328][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/65124.xml"
biodb.DEBUG[2024-05-04 16:02:22.330][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-04 16:02:22.331][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-05-04 16:02:22.332][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-05-04 16:02:22.333][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:22.334][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:22.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:22.339][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:22.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:22.341][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:22.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:22.343][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:22.344][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:22.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.346][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.347][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:22.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:22.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.350][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:22.351][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:22.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.352][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:22.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:22.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.356][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:22.357][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:22.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.359][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:22.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:22.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.363][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:22.363][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:22.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.365][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:22.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:22.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.369][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:22.370][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:22.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.371][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:22.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:22.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.375][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:22.376][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:22.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.377][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.378][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:22.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:22.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.381][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:22.382][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:22.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.383][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.384][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:22.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:22.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.387][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:22.388][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:22.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.390][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.391][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:22.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:22.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.394][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:22.395][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:22.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.396][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.397][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:22.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:22.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.401][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:22.401][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:22.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.403][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.404][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:22.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:22.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.407][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:22.408][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:22.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.410][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.411][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:22.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:22.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.414][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:22.415][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:22.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.416][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.417][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:22.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:22.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.421][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:22.421][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:22.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.423][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.424][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:22.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:22.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.427][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:22.428][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:22.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.429][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.430][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:22.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:22.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.434][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-04 16:02:22.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:22.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:22.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:22.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:22.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:22.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.444][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-04 16:02:22.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:22.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:22.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:22.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:22.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:22.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.453][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-04 16:02:22.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:22.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:22.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:22.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:22.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:22.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.470][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-04 16:02:22.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:22.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:22.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:22.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.477][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:22.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:22.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.480][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-04 16:02:22.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:22.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:22.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:22.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.486][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:22.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:22.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.489][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:22.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:22.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.492][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:22.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:22.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.495][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:22.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:22.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.498][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:22.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:22.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.502][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:22.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:22.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:22.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:22.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:22.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:22.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:22.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:22.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:22.514][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:22.515][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:22.516][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:22.520][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:22.521][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:22.522][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:22.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:22.524][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:22.525][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:22.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.527][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:22.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:22.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.531][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:22.532][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:22.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.533][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:22.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:22.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.537][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:22.538][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:22.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.539][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:22.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:22.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.543][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:22.544][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:22.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.545][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:22.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:22.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.549][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:22.550][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:22.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.552][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.553][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:22.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:22.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.556][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:22.557][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:22.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.558][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:22.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:22.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.562][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:22.563][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:22.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.564][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.565][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:22.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:22.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.568][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:22.569][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:22.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.571][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.571][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:22.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:22.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.575][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:22.576][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:22.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.577][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:22.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:22.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.581][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:22.582][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:22.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.583][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:22.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:22.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.587][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:22.588][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:22.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.590][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.591][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:22.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:22.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.594][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:22.594][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:22.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.596][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.597][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:22.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:22.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.600][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:22.600][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:22.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.602][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.603][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:22.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:22.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.606][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:22.606][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:22.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.608][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.609][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:22.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:22.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.612][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-04 16:02:22.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:22.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:22.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:22.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:22.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:22.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.621][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-04 16:02:22.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:22.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.624][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:22.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:22.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:22.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:22.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.629][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-04 16:02:22.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:22.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:22.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:22.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:22.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:22.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.638][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-04 16:02:22.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:22.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.641][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:22.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:22.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:22.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:22.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.647][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-04 16:02:22.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:22.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.650][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:22.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:22.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.653][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:22.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:22.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.656][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:22.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:22.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.659][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:22.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:22.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.662][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:22.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:22.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:22.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:22.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.668][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:22.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:22.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:22.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:22.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:22.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:22.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:22.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:22.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:22.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:22.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:22.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:22.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:22.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:22.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:22.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:22.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.692][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:22.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:22.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:22.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:22.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:22.698][self$createEntryFromContent] Accession numbers: 2, 65124.
biodb.TRACE[2024-05-04 16:02:22.699][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-04 16:02:22.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-04 16:02:22.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.702][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-04 16:02:22.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-04 16:02:22.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.705][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-04 16:02:22.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-04 16:02:22.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.712][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-04 16:02:22.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-04 16:02:22.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.715][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-04 16:02:22.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-04 16:02:22.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.718][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-04 16:02:22.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-04 16:02:22.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-04 16:02:22.728][biodb::testThat]
biodb.INFO [2024-05-04 16:02:22.729][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-05-04 16:02:22.730][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:02:22.730][biodb::testThat]
biodb.TRACE[2024-05-04 16:02:22.733][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:22.734][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:22.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.735][ef$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:22.741][function(conn, opt)] Testing searchForEntries() with entry "2" and field "name".
biodb.TRACE[2024-05-04 16:02:22.752][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:22.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:22.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.755][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:22.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:22.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:22.758][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:22.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:22.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:22.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:22.763][function(conn, opt)] With value "(2-acetyloxy-3-carboxypropyl)-trimethylazanium".
biodb.DEBUG[2024-05-04 16:02:22.782][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-05-04 16:02:22.784][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:22.785][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:22.787][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D&retmax=10".
biodb.TRACE[2024-05-04 16:02:22.915][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D&retmax=10 does not exist.
biodb.TRACE[2024-05-04 16:02:22.916][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-04 16:02:22.917][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D&retmax=10" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-04 16:02:22.918][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D&retmax=10).
biodb.DEBUG[2024-05-04 16:02:23.062][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:02:23.064][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content"
biodb.TRACE[2024-05-04 16:02:23.067][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.request"
biodb.DEBUG[2024-05-04 16:02:23.069][function(conn, opt)] With found IDs [5]: "87229113, 25217148, 450343, 450342, 2".
biodb.TRACE[2024-05-04 16:02:23.079][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:23.080][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:23.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:23.081][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:23.082][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:23.083][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:23.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:23.084][ef$get] fields variable is a list.
biodb.INFO [2024-05-04 16:02:23.088][biodb::testThat]
biodb.INFO [2024-05-04 16:02:23.088][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-05-04 16:02:23.089][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:02:23.090][biodb::testThat]
biodb.TRACE[2024-05-04 16:02:23.099][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:23.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:23.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:23.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:23.102][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:23.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:23.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:23.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:23.105][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:23.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:23.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:23.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:23.139][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-05-04 16:02:23.142][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:02:23.143][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-05-04 16:02:23.144][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:02:23.145][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.INFO [2024-05-04 16:02:23.159][biodb::testThat]
biodb.INFO [2024-05-04 16:02:23.160][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-05-04 16:02:23.161][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:02:23.161][biodb::testThat]
biodb.TRACE[2024-05-04 16:02:23.169][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:23.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:23.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:23.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:23.172][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:23.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:23.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:23.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:23.175][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:23.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:23.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:23.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:23.179][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:02:23.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:02:23.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:23.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:23.182][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:02:23.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:02:23.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:23.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:23.184][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-04 16:02:23.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-04 16:02:23.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:23.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:23.187][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-04 16:02:23.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-04 16:02:23.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:23.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:23.191][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:23.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:23.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:23.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:23.194][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:23.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:23.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:23.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:23.197][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:23.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:23.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:23.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:23.200][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:02:23.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:02:23.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:23.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:23.204][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:02:23.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:02:23.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:23.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:23.207][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-04 16:02:23.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-04 16:02:23.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:23.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:23.210][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-04 16:02:23.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-04 16:02:23.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:23.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-04 16:02:23.218][biodb::testThat]
biodb.INFO [2024-05-04 16:02:23.219][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-05-04 16:02:23.220][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:02:23.220][biodb::testThat]
biodb.INFO [2024-05-04 16:02:23.227][biodb::testThat]
biodb.INFO [2024-05-04 16:02:23.228][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-05-04 16:02:23.229][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:02:23.230][biodb::testThat]
biodb.INFO [2024-05-04 16:02:23.237][biodb::testThat]
biodb.INFO [2024-05-04 16:02:23.238][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-05-04 16:02:23.238][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:02:23.239][biodb::testThat]
biodb.DEBUG[2024-05-04 16:02:23.242][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/compound/2".
biodb.DEBUG[2024-05-04 16:02:23.357][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/compound/2.
biodb.INFO [2024-05-04 16:02:23.546][biodb::testThat]
biodb.INFO [2024-05-04 16:02:23.547][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-05-04 16:02:23.548][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:02:23.548][biodb::testThat]
biodb.DEBUG[2024-05-04 16:02:23.644][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?cid=2&t=l.
biodb.TRACE[2024-05-04 16:02:23.740][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:23.741][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:23.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:23.743][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:23.744][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:23.745][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:23.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:23.746][ef$get] fields variable is a list.
biodb.INFO [2024-05-04 16:02:23.748][biodb::testThat]
biodb.INFO [2024-05-04 16:02:23.749][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2024-05-04 16:02:23.749][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:02:23.750][biodb::testThat]
biodb.TRACE[2024-05-04 16:02:23.772][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:23.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:23.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:23.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:23.775][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:23.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:23.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:23.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:23.778][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:23.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:23.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:23.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:23.852][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-05-04 16:02:23.855][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:02:23.856][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-05-04 16:02:23.857][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:02:23.858][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2024-05-04 16:02:23.913][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-05-04 16:02:23.915][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:02:23.917][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-05-04 16:02:23.918][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:02:23.919][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.TRACE[2024-05-04 16:02:23.932][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-04 16:02:23.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-04 16:02:23.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:23.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:23.939][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:23.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:23.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:23.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:23.942][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:23.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:23.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:23.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:23.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:23.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:23.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:23.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:23.948][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:23.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:23.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:23.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:23.951][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:23.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:23.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:23.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:23.961][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:23.963][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:23.964][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:23.965][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.25%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-05-04 16:02:24.041][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.25%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-04 16:02:24.042][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-04 16:02:24.043][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.25%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-04 16:02:24.045][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.25%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-05-04 16:02:24.133][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:02:24.135][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content"
biodb.TRACE[2024-05-04 16:02:24.138][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.request"
biodb.DEBUG[2024-05-04 16:02:24.151][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-05-04 16:02:24.154][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:24.155][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:24.156][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.25%5BMolecularWeight%5D&retmax=1000000".
biodb.TRACE[2024-05-04 16:02:24.235][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.25%5BMolecularWeight%5D&retmax=1000000 does not exist.
biodb.TRACE[2024-05-04 16:02:24.236][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-04 16:02:24.237][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.25%5BMolecularWeight%5D&retmax=1000000" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-04 16:02:24.239][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.25%5BMolecularWeight%5D&retmax=1000000).
biodb.DEBUG[2024-05-04 16:02:24.676][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:02:24.678][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/43af01c58cfaf2fe3448c11004a21986.content"
biodb.TRACE[2024-05-04 16:02:24.682][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/43af01c58cfaf2fe3448c11004a21986.request"
biodb.DEBUG[2024-05-04 16:02:24.924][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-05-04 16:02:24.926][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:24.927][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:24.929][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.23%3A204.25%5BMolecularWeight%5D&retmax=1000000".
biodb.TRACE[2024-05-04 16:02:25.005][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.23%3A204.25%5BMolecularWeight%5D&retmax=1000000 does not exist.
biodb.TRACE[2024-05-04 16:02:25.006][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-04 16:02:25.008][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.23%3A204.25%5BMolecularWeight%5D&retmax=1000000" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-04 16:02:25.009][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.23%3A204.25%5BMolecularWeight%5D&retmax=1000000).
biodb.DEBUG[2024-05-04 16:02:25.171][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:02:25.173][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/5a651e56a091cb06291b388106735d55.content"
biodb.TRACE[2024-05-04 16:02:25.176][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/5a651e56a091cb06291b388106735d55.request"
biodb.DEBUG[2024-05-04 16:02:25.196][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.27[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-05-04 16:02:25.198][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:25.199][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:25.201][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.23%3A204.27%5BMolecularWeight%5D&retmax=1000000".
biodb.TRACE[2024-05-04 16:02:25.275][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.23%3A204.27%5BMolecularWeight%5D&retmax=1000000 does not exist.
biodb.TRACE[2024-05-04 16:02:25.276][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-04 16:02:25.278][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.23%3A204.27%5BMolecularWeight%5D&retmax=1000000" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-04 16:02:25.279][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.23%3A204.27%5BMolecularWeight%5D&retmax=1000000).
biodb.DEBUG[2024-05-04 16:02:25.431][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:02:25.433][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/d3d0da2755d093596dae584b7698bc73.content"
biodb.TRACE[2024-05-04 16:02:25.436][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/d3d0da2755d093596dae584b7698bc73.request"
biodb.TRACE[2024-05-04 16:02:25.452][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:25.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:25.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:25.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:25.455][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:25.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:25.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:25.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:25.458][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:25.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:25.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:25.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:25.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:25.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:25.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:25.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:25.465][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:25.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:25.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:25.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:25.473][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:25.476][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:25.476][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:25.478][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-05-04 16:02:25.554][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-04 16:02:25.555][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-04 16:02:25.556][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-04 16:02:25.558][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-05-04 16:02:25.646][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:02:25.648][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1384af38a786fc6768cd7f1e796d96ab.content"
biodb.TRACE[2024-05-04 16:02:25.651][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1384af38a786fc6768cd7f1e796d96ab.request"
biodb.DEBUG[2024-05-04 16:02:25.664][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-05-04 16:02:25.667][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:25.667][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:25.669][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000".
biodb.TRACE[2024-05-04 16:02:25.743][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000 does not exist.
biodb.TRACE[2024-05-04 16:02:25.744][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-04 16:02:25.745][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-04 16:02:25.746][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000).
biodb.INFO [2024-05-04 16:02:25.826][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000". Retrying connection to server...
biodb.DEBUG[2024-05-04 16:02:25.827][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:25.827][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:25.829][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000".
biodb.TRACE[2024-05-04 16:02:25.915][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000 does not exist.
biodb.TRACE[2024-05-04 16:02:25.916][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-04 16:02:25.917][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-04 16:02:25.918][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000).
biodb.INFO [2024-05-04 16:02:25.996][private$doSendRequestLoop] Error when retrieving URL content HTTP error 404 (""). When contacting URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000". Retrying connection to server...
biodb.DEBUG[2024-05-04 16:02:25.997][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:25.998][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:25.999][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000".
biodb.TRACE[2024-05-04 16:02:26.075][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000 does not exist.
biodb.TRACE[2024-05-04 16:02:26.076][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-04 16:02:26.077][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-04 16:02:26.078][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000).
biodb.DEBUG[2024-05-04 16:02:26.237][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:02:26.239][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/983d3a3af3901d23b5d919d379c6bd32.content"
biodb.TRACE[2024-05-04 16:02:26.242][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/983d3a3af3901d23b5d919d379c6bd32.request"
biodb.DEBUG[2024-05-04 16:02:26.257][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-05-04 16:02:26.259][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:26.260][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:26.262][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000".
biodb.TRACE[2024-05-04 16:02:26.364][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000 does not exist.
biodb.TRACE[2024-05-04 16:02:26.365][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-04 16:02:26.366][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-04 16:02:26.367][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.12358305%3A204.12358307%5BMonoisotopicMass%5D&retmax=1000000).
biodb.DEBUG[2024-05-04 16:02:26.524][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:02:26.526][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/b9a9be2efcff8c77fef3b8a87f25b444.content"
biodb.TRACE[2024-05-04 16:02:26.529][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/b9a9be2efcff8c77fef3b8a87f25b444.request"
biodb.DEBUG[2024-05-04 16:02:26.550][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358309[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-05-04 16:02:26.552][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:26.553][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:26.555][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.12358305%3A204.12358309%5BMonoisotopicMass%5D&retmax=1000000".
biodb.TRACE[2024-05-04 16:02:26.633][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.12358305%3A204.12358309%5BMonoisotopicMass%5D&retmax=1000000 does not exist.
biodb.TRACE[2024-05-04 16:02:26.634][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-04 16:02:26.636][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.12358305%3A204.12358309%5BMonoisotopicMass%5D&retmax=1000000" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-04 16:02:26.637][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=%22%282-acetyloxy-3-carboxypropyl%29-trimethylazanium%22%5BIUPACName%5D%20AND%20204.12358305%3A204.12358309%5BMonoisotopicMass%5D&retmax=1000000).
biodb.DEBUG[2024-05-04 16:02:26.792][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:02:26.794][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6d4e46c6f0a021fc6e92911d60537192.content"
biodb.TRACE[2024-05-04 16:02:26.797][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6d4e46c6f0a021fc6e92911d60537192.request"
biodb.TRACE[2024-05-04 16:02:26.832][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-04 16:02:26.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-04 16:02:26.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:26.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-04 16:02:26.842][biodb::testThat]
biodb.INFO [2024-05-04 16:02:26.842][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-05-04 16:02:26.843][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:02:26.844][biodb::testThat]
biodb.TRACE[2024-05-04 16:02:26.846][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-04 16:02:26.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-04 16:02:26.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:26.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:26.849][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-04 16:02:26.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-04 16:02:26.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:26.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:26.852][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:26.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:26.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:26.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:26.856][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:26.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:26.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:26.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:26.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:26.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:26.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:26.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:26.862][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:26.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:26.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:26.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:26.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:26.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:26.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:26.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:26.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:26.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:26.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:26.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:26.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:26.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:26.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:26.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:26.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:26.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:26.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:26.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:26.880][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:26.881][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:26.881][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:26.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:26.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:26.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:26.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:26.893][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:26.896][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:02:26.897][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-05-04 16:02:26.898][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:02:26.899][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-05-04 16:02:26.900][private$loadEntries] Creating entries from ids [3]: "171364948, 171334113, 171326497".
biodb.DEBUG[2024-05-04 16:02:26.901][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-05-04 16:02:26.902][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171364948, 171334113, 171326497".
biodb.TRACE[2024-05-04 16:02:26.903][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-05-04 16:02:26.904][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-04 16:02:26.905][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-04 16:02:26.906][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-04 16:02:26.906][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-04 16:02:26.907][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-04 16:02:26.919][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-05-04 16:02:26.921][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171364948,171334113,171326497/XML".
biodb.DEBUG[2024-05-04 16:02:26.922][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:26.923][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:26.924][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171364948,171334113,171326497/XML".
biodb.TRACE[2024-05-04 16:02:27.089][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171364948,171334113,171326497/XML).
biodb.TRACE[2024-05-04 16:02:27.345][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171364948.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171334113.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171326497.xml"
biodb.DEBUG[2024-05-04 16:02:27.348][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-04 16:02:27.349][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-05-04 16:02:27.350][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-05-04 16:02:27.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:27.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:27.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:27.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:27.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:27.359][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:27.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:27.361][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:27.362][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:27.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.364][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.365][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:27.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:27.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.368][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:27.369][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:27.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.370][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.371][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:27.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:27.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.375][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:27.375][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:27.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.377][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.378][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:27.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:27.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.381][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:27.382][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:27.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.383][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:27.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:27.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.388][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:27.388][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:27.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.390][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.391][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:27.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:27.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.395][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:27.395][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:27.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.397][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.398][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:27.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:27.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.401][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:27.402][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:27.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.403][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.404][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:27.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:27.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.408][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:27.408][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:27.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.410][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.411][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:27.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:27.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.414][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:27.415][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:27.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.417][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.418][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:27.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:27.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.421][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:27.422][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:27.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.423][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.424][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:27.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:27.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.427][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:27.428][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:27.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.429][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.430][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:27.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:27.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.433][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:27.434][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:27.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.436][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.437][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:27.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:27.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.440][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:27.441][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:27.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.442][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.443][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:27.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:27.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.446][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:27.447][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:27.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.448][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.449][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:27.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:27.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.452][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-04 16:02:27.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:27.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:27.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:27.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.458][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:27.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:27.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.461][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-04 16:02:27.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:27.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.465][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:27.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:27.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.468][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:27.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:27.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.471][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-04 16:02:27.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:27.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.475][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:27.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:27.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.478][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:27.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:27.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.481][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-04 16:02:27.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:27.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:27.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:27.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.487][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:27.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:27.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.490][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-04 16:02:27.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:27.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.502][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:27.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:27.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.506][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:27.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:27.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.508][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:27.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:27.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.511][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.515][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.517][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:27.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:27.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.520][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:27.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:27.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:27.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:27.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:27.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:27.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:27.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:27.534][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:27.534][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:27.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:27.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:27.540][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:27.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:27.543][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:27.544][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:27.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.546][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:27.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:27.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.550][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:27.551][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:27.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.552][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.553][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:27.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:27.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.556][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:27.557][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:27.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.559][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.560][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:27.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:27.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.563][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:27.564][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:27.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.565][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.566][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:27.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:27.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.569][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:27.570][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:27.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.572][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.573][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:27.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:27.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.576][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:27.577][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:27.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.578][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.579][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:27.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:27.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.582][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:27.583][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:27.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.584][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.585][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:27.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:27.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.588][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:27.589][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:27.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.590][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.592][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:27.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:27.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.595][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:27.595][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:27.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.597][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.598][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:27.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:27.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.601][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:27.601][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:27.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.603][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.604][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:27.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:27.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.607][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:27.608][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:27.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.609][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.610][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:27.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:27.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.613][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:27.614][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:27.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.615][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:27.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:27.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.620][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:27.620][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:27.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.622][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.623][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:27.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:27.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.626][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:27.627][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:27.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.628][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.629][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:27.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:27.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.632][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-04 16:02:27.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:27.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:27.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:27.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:27.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:27.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.641][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-04 16:02:27.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:27.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.645][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:27.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:27.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.648][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:27.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:27.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.651][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-04 16:02:27.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:27.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.654][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:27.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:27.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:27.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:27.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.660][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-04 16:02:27.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:27.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.664][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:27.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:27.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.667][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:27.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:27.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.670][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-04 16:02:27.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:27.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.673][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:27.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:27.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.676][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:27.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:27.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.679][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:27.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:27.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.682][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.685][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.688][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:27.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:27.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.691][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.694][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:27.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:27.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.697][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:27.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:27.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:27.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:27.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:27.704][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:27.704][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:27.705][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:27.709][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:27.710][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:27.711][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:27.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:27.714][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:27.715][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:27.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.716][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.717][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:27.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:27.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.720][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:27.721][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:27.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.722][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:27.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:27.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.727][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:27.728][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:27.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.729][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:27.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:27.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.733][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:27.734][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:27.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.735][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.737][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:27.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:27.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.739][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:27.740][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:27.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.742][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.743][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:27.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:27.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.746][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:27.753][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:27.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.754][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.755][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:27.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:27.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.758][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:27.759][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:27.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.761][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.762][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:27.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:27.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.765][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:27.765][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:27.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.767][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.768][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:27.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:27.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.771][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:27.772][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:27.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.773][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.774][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:27.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:27.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.777][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:27.778][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:27.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.779][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:27.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:27.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.783][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:27.784][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:27.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.785][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.786][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:27.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:27.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.789][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:27.790][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:27.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.792][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:27.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:27.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.796][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:27.796][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:27.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.798][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.799][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:27.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:27.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.802][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:27.803][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:27.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.804][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.805][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:27.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:27.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.808][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-04 16:02:27.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:27.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:27.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:27.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.814][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:27.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:27.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.817][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-04 16:02:27.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:27.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:27.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:27.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.823][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:27.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:27.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.826][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-04 16:02:27.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:27.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.829][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:27.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:27.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.832][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:27.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:27.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.835][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-04 16:02:27.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:27.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:27.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:27.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.841][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:27.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:27.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.844][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-04 16:02:27.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:27.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:27.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:27.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.850][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:27.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:27.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.853][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:27.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:27.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.856][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:27.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:27.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.865][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:27.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:27.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:27.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:27.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.873][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:27.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:27.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:27.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:27.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.879][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:27.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:27.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:27.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:27.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.885][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:27.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:27.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.888][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:27.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:27.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:27.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:27.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:27.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:27.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:27.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:27.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:27.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:27.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:27.903][self$createEntryFromContent] Accession numbers: 171364948, 171334113, 171326497.
biodb.DEBUG[2024-05-04 16:02:27.904][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:27.905][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:27.906][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:27.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:27.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:27.912][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:27.912][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:27.913][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:27.914][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.917][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.920][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:27.920][private$selectFields]
biodb.TRACE[2024-05-04 16:02:27.921][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:27.922][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:27.923][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:27.924][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.924][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.926][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.926][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.927][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.929][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.929][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:27.930][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:27.931][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.932][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.933][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.934][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:27.935][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.938][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.940][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.950][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171364948].
biodb.DEBUG[2024-05-04 16:02:27.951][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:27.952][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:27.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:27.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:27.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:27.958][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:27.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:27.960][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.966][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:27.967][private$selectFields]
biodb.TRACE[2024-05-04 16:02:27.968][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:27.968][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:27.969][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:27.970][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.971][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.972][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.973][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.973][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.975][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.976][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:27.977][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:27.977][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.978][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.979][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.980][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:27.981][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.984][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.993][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:27.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:27.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:27.996][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171334113].
biodb.DEBUG[2024-05-04 16:02:27.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:27.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:27.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:28.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:28.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:28.003][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:28.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:28.005][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:28.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:28.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.008][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:28.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:28.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.011][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:28.012][private$selectFields]
biodb.TRACE[2024-05-04 16:02:28.012][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:28.013][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:28.014][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:28.015][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:28.015][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:28.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.017][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.017][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:28.018][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:28.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.020][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.020][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:28.021][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:28.022][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:28.023][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:28.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.024][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.025][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:28.026][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:28.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:28.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.028][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:28.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:28.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.031][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:28.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:28.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.035][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171326497].
biodb.DEBUG[2024-05-04 16:02:28.035][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:28.036][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:28.038][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:28.039][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:28.039][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:28.044][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:28.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:28.045][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:28.046][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:28.051][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:28.054][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:28.054][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:28.056][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-05-04 16:02:28.131][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-04 16:02:28.132][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-04 16:02:28.134][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-04 16:02:28.135][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-05-04 16:02:28.243][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:02:28.245][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content"
biodb.TRACE[2024-05-04 16:02:28.248][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.request"
biodb.DEBUG[2024-05-04 16:02:28.250][private$loadEntries] Creating entries from ids [3]: "171341956, 171316324, 171316323".
biodb.DEBUG[2024-05-04 16:02:28.250][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-05-04 16:02:28.251][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171341956, 171316324, 171316323".
biodb.TRACE[2024-05-04 16:02:28.252][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-05-04 16:02:28.253][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-04 16:02:28.254][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-04 16:02:28.255][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-04 16:02:28.256][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-04 16:02:28.256][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-04 16:02:28.257][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-05-04 16:02:28.258][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171341956,171316324,171316323/XML".
biodb.DEBUG[2024-05-04 16:02:28.260][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:28.261][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:28.262][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171341956,171316324,171316323/XML".
biodb.TRACE[2024-05-04 16:02:28.502][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171341956,171316324,171316323/XML).
biodb.TRACE[2024-05-04 16:02:28.761][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171341956.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171316324.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171316323.xml"
biodb.DEBUG[2024-05-04 16:02:28.763][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-04 16:02:28.764][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-05-04 16:02:28.765][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-05-04 16:02:28.767][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:28.767][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:28.768][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:28.773][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:28.773][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:28.774][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:28.775][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:28.777][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:28.778][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:28.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.779][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.780][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:28.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:28.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.783][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:28.784][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:28.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.785][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:28.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:28.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.789][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:28.790][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:28.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.791][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.792][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:28.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:28.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.795][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:28.796][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:28.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.797][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:28.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:28.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.801][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:28.802][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:28.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.804][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.805][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:28.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:28.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.808][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:28.808][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:28.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.810][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.811][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:28.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:28.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.814][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:28.815][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:28.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.816][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.817][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:28.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:28.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.820][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:28.821][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:28.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.822][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.823][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:28.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:28.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.826][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:28.827][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:28.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.829][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.830][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:28.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:28.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.833][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:28.834][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:28.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.835][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.836][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:28.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:28.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.839][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:28.840][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:28.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.842][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.843][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:28.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:28.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.846][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:28.846][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:28.847][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.848][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:28.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:28.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.852][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:28.853][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:28.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.854][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.855][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:28.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:28.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.858][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:28.859][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:28.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.860][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.861][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:28.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:28.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.864][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-04 16:02:28.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:28.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.868][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:28.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:28.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:28.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:28.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.874][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-04 16:02:28.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:28.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:28.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:28.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:28.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:28.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.883][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-04 16:02:28.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:28.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.887][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:28.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:28.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:28.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:28.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.893][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-04 16:02:28.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:28.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.896][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:28.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:28.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.899][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:28.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:28.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.902][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-04 16:02:28.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:28.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.905][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:28.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:28.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:28.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:28.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.911][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:28.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:28.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:28.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:28.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.928][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:28.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:28.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:28.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:28.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.933][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:28.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:28.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:28.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:28.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:28.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:28.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:28.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:28.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:28.945][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:28.946][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:28.946][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:28.951][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:28.952][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:28.952][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:28.953][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:28.955][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:28.956][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:28.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.957][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.958][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:28.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:28.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.961][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:28.962][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:28.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.963][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.964][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:28.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:28.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.967][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:28.968][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:28.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.969][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.970][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:28.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:28.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.973][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:28.974][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:28.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.975][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.976][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:28.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:28.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.979][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:28.980][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:28.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.981][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:28.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:28.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.985][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:28.986][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:28.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.987][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.988][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:28.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:28.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.991][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:28.992][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:28.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.993][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.994][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:28.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:28.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:28.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:28.997][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:28.998][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:28.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.000][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.001][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:29.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:29.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.004][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:29.005][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:29.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.006][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:29.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:29.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.011][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:29.012][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:29.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.013][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.014][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:29.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:29.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.017][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:29.018][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:29.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.019][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.020][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:29.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:29.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.023][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:29.024][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:29.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.025][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.026][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:29.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:29.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.029][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:29.030][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:29.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.032][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.032][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:29.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:29.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.035][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:29.036][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:29.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.038][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.039][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:29.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:29.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.042][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-04 16:02:29.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:29.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.045][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:29.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:29.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:29.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:29.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.051][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-04 16:02:29.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:29.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:29.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:29.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.057][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:29.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:29.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.060][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-04 16:02:29.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:29.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:29.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:29.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.066][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:29.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:29.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.069][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-04 16:02:29.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:29.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:29.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:29.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.076][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:29.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:29.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.079][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-04 16:02:29.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:29.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:29.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:29.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.085][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:29.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:29.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.088][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:29.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:29.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.092][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.095][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.099][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:29.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:29.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:29.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:29.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:29.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:29.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:29.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:29.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:29.116][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:29.117][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:29.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:29.122][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:29.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:29.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:29.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:29.129][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:29.130][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:29.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.131][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.132][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:29.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:29.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.135][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:29.136][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:29.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.138][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.139][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:29.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:29.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.142][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:29.143][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:29.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.144][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:29.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:29.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.148][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:29.150][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:29.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.151][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:29.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:29.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.155][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:29.156][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:29.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.157][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.158][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:29.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:29.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.161][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:29.162][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:29.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.165][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:29.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:29.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.169][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:29.170][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:29.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.178][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.179][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:29.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:29.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.182][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:29.183][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:29.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.185][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.186][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:29.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:29.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.189][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:29.190][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:29.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.191][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.192][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:29.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:29.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.195][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:29.196][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:29.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.198][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:29.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:29.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.202][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:29.203][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:29.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.204][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.205][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:29.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:29.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.208][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:29.209][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:29.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.211][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:29.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:29.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.215][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:29.216][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:29.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.217][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.218][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:29.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:29.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.222][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:29.223][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:29.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.224][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.225][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:29.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:29.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.228][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-04 16:02:29.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:29.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.231][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:29.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:29.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.234][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:29.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:29.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.237][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-04 16:02:29.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:29.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.241][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:29.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:29.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.244][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:29.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:29.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.248][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-04 16:02:29.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:29.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:29.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:29.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.256][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:29.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:29.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.259][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-04 16:02:29.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:29.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.262][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:29.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:29.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:29.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:29.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.268][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-04 16:02:29.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:29.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.272][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:29.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:29.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:29.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:29.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.278][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:29.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:29.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.284][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:29.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:29.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.290][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:29.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:29.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:29.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:29.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:29.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:29.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:29.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:29.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:29.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:29.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:29.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:29.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:29.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:29.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:29.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:29.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:29.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:29.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:29.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:29.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:29.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:29.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:29.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:29.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:29.332][self$createEntryFromContent] Accession numbers: 171341956, 171316324, 171316323.
biodb.DEBUG[2024-05-04 16:02:29.350][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:29.368][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:29.369][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:29.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:29.374][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:29.375][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:29.376][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:29.377][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:29.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.380][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.384][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:29.384][private$selectFields]
biodb.TRACE[2024-05-04 16:02:29.385][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:29.386][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:29.386][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:29.387][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.388][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.390][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.390][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.391][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.393][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.393][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:29.394][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:29.395][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.396][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.397][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.398][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:29.398][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.402][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.405][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.408][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171341956].
biodb.DEBUG[2024-05-04 16:02:29.409][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:29.410][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:29.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:29.421][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:29.422][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:29.423][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:29.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:29.424][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.427][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.430][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:29.431][private$selectFields]
biodb.TRACE[2024-05-04 16:02:29.432][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:29.432][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:29.433][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:29.434][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.435][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.436][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.437][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.438][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.439][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.440][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:29.440][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:29.441][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.442][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.443][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.444][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:29.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.448][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.454][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171316324].
biodb.DEBUG[2024-05-04 16:02:29.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:29.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:29.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:29.460][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:29.461][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:29.462][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:29.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:29.463][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.467][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.470][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:29.471][private$selectFields]
biodb.TRACE[2024-05-04 16:02:29.471][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:29.472][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:29.473][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:29.473][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.474][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.476][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.476][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.477][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.479][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.479][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:29.480][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:29.481][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.482][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.483][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.484][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:29.485][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.491][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:29.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.494][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171316323].
biodb.DEBUG[2024-05-04 16:02:29.495][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:29.496][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-05-04 16:02:29.504][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:29.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:29.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:29.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:29.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:29.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:29.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:29.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:29.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:29.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:29.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:29.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:29.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.523][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:29.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:29.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:29.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:29.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:29.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:29.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:29.569][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:29.570][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:29.571][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:29.575][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:29.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:29.577][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:29.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:29.583][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:29.585][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:29.586][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:29.587][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-05-04 16:02:29.663][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-04 16:02:29.664][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-04 16:02:29.665][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-04 16:02:29.667][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-05-04 16:02:29.756][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:02:29.758][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content"
biodb.TRACE[2024-05-04 16:02:29.761][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.request"
biodb.DEBUG[2024-05-04 16:02:29.763][private$loadEntries] Creating entries from ids [2]: "171338202, 171326566".
biodb.DEBUG[2024-05-04 16:02:29.764][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-05-04 16:02:29.765][cch$loadFileContent] Trying to load 2 files from cache: [2]: "171338202, 171326566".
biodb.TRACE[2024-05-04 16:02:29.766][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-05-04 16:02:29.767][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-04 16:02:29.768][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-04 16:02:29.768][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-04 16:02:29.769][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-04 16:02:29.770][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-04 16:02:29.771][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-05-04 16:02:29.772][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171338202,171326566/XML".
biodb.DEBUG[2024-05-04 16:02:29.774][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:29.775][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:29.776][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171338202,171326566/XML".
biodb.TRACE[2024-05-04 16:02:29.896][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171338202,171326566/XML).
biodb.TRACE[2024-05-04 16:02:30.120][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171338202.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171326566.xml"
biodb.DEBUG[2024-05-04 16:02:30.122][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-04 16:02:30.123][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-05-04 16:02:30.124][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-05-04 16:02:30.125][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:30.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:30.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:30.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:30.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:30.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:30.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:30.136][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:30.137][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:30.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.138][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:30.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:30.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.143][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:30.144][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:30.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.145][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:30.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:30.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.150][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:30.151][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:30.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.152][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.154][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:30.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:30.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.157][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:30.158][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:30.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.159][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:30.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:30.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.175][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:30.176][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:30.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.177][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.178][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:30.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:30.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.182][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:30.182][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:30.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.184][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:30.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:30.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.188][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:30.189][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:30.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.190][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.191][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:30.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:30.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.194][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:30.195][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:30.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.197][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.198][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:30.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:30.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.201][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:30.202][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:30.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.203][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:30.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:30.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.208][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:30.209][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:30.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.210][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.211][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:30.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:30.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.215][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:30.215][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:30.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.217][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.218][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:30.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:30.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.221][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:30.222][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:30.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.223][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.225][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:30.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:30.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.228][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:30.229][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:30.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.230][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.231][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:30.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:30.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.234][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:30.235][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:30.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.236][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.237][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:30.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:30.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.241][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-04 16:02:30.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:30.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.244][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:30.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:30.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.247][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:30.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:30.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.250][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-04 16:02:30.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:30.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:30.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:30.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.256][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:30.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:30.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.260][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-04 16:02:30.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:30.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:30.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:30.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.266][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:30.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:30.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.269][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-04 16:02:30.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:30.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.273][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:30.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:30.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.276][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:30.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:30.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.279][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-04 16:02:30.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:30.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.282][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:30.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:30.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:30.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:30.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.288][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:30.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:30.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.291][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.294][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:30.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:30.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:30.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:30.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.307][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:30.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:30.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:30.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:30.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:30.313][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:30.314][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:30.315][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:30.319][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:30.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:30.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:30.323][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:30.325][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:30.325][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:30.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.327][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:30.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:30.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.331][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:30.332][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:30.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.333][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.334][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:30.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:30.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.338][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:30.338][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:30.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.340][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:30.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:30.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.344][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:30.345][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:30.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.346][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.347][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:30.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:30.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.350][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:30.351][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:30.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.352][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:30.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:30.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.356][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:30.357][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:30.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.359][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:30.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:30.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.363][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:30.364][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:30.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.365][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.366][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:30.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:30.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.369][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:30.370][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:30.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.371][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.372][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:30.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:30.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.376][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:30.376][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:30.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.378][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:30.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:30.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.382][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:30.383][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:30.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.384][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:30.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:30.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.388][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:30.389][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:30.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.390][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.391][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:30.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:30.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.394][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:30.395][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:30.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.397][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:30.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:30.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.401][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:30.402][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:30.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.403][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.404][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:30.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:30.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.408][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:30.408][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:30.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.410][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.411][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:30.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:30.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.414][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-04 16:02:30.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:30.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.417][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:30.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:30.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.426][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:30.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:30.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.429][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-04 16:02:30.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:30.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.432][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:30.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:30.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:30.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:30.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.438][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-04 16:02:30.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:30.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:30.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:30.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:30.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:30.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.447][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-04 16:02:30.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:30.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:30.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:30.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:30.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:30.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.456][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-04 16:02:30.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:30.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:30.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:30.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:30.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:30.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.466][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:30.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:30.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.469][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.472][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:30.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:30.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.478][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:30.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:30.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:30.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:30.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.487][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:30.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:30.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.490][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:30.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:30.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:30.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:30.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:30.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:30.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:30.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:30.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.503][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:30.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:30.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:30.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:30.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:30.509][self$createEntryFromContent] Accession numbers: 171338202, 171326566.
biodb.DEBUG[2024-05-04 16:02:30.510][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:30.511][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:30.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:30.513][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:30.518][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:30.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:30.519][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:30.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:30.530][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.533][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.551][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:30.552][private$selectFields]
biodb.TRACE[2024-05-04 16:02:30.553][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:30.554][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:30.554][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:30.555][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.556][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.557][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.558][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.559][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.560][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.561][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:30.568][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:30.569][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.570][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.571][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.572][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:30.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.579][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.582][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171364948].
biodb.DEBUG[2024-05-04 16:02:30.583][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:30.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:30.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:30.589][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:30.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:30.590][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:30.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:30.592][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.595][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.598][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:30.599][private$selectFields]
biodb.TRACE[2024-05-04 16:02:30.599][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:30.600][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:30.601][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:30.602][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.602][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.604][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.605][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.606][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.607][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.608][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:30.609][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:30.609][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.610][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.612][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.613][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:30.614][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.617][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.620][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.623][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171338202].
biodb.DEBUG[2024-05-04 16:02:30.624][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:30.625][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:30.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:30.630][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:30.631][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:30.631][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:30.632][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:30.633][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.636][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.640][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:30.640][private$selectFields]
biodb.TRACE[2024-05-04 16:02:30.641][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:30.642][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:30.643][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:30.643][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.644][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.646][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.646][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.647][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.649][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.649][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:30.650][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:30.651][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.652][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.653][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.654][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:30.696][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.705][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.708][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:30.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:30.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:30.712][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171326566].
biodb.DEBUG[2024-05-04 16:02:30.712][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:30.713][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:30.715][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:30.715][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:30.716][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:30.721][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:30.722][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:30.722][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:30.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:30.728][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:30.731][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:30.732][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:30.733][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-05-04 16:02:30.812][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-04 16:02:30.813][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-04 16:02:30.814][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-04 16:02:30.815][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-05-04 16:02:30.963][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:02:30.965][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content"
biodb.TRACE[2024-05-04 16:02:30.968][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.request"
biodb.DEBUG[2024-05-04 16:02:30.970][private$loadEntries] Creating entries from ids [3]: "171316040, 171260713, 171260621".
biodb.DEBUG[2024-05-04 16:02:30.971][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-05-04 16:02:30.972][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171316040, 171260713, 171260621".
biodb.TRACE[2024-05-04 16:02:30.973][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-05-04 16:02:30.974][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-04 16:02:30.975][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-04 16:02:30.976][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-04 16:02:30.976][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-04 16:02:30.977][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-04 16:02:30.978][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-05-04 16:02:30.979][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171316040,171260713,171260621/XML".
biodb.DEBUG[2024-05-04 16:02:30.981][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:30.982][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:30.983][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171316040,171260713,171260621/XML".
biodb.TRACE[2024-05-04 16:02:31.138][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171316040,171260713,171260621/XML).
biodb.TRACE[2024-05-04 16:02:31.383][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171316040.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171260713.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171260621.xml"
biodb.DEBUG[2024-05-04 16:02:31.385][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-04 16:02:31.386][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-05-04 16:02:31.387][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-05-04 16:02:31.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:31.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:31.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:31.395][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:31.396][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:31.396][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:31.397][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:31.399][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:31.400][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:31.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.402][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.403][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:31.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:31.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.406][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:31.407][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:31.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.409][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.410][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:31.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:31.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.413][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:31.414][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:31.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.415][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.416][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:31.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:31.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.420][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:31.421][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:31.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.422][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:31.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:31.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.426][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:31.427][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:31.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.429][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:31.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:31.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.433][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:31.434][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:31.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.435][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.436][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:31.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:31.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.439][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:31.440][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:31.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.442][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.443][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:31.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:31.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.446][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:31.446][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:31.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.448][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.449][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:31.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:31.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.452][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:31.453][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:31.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.454][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:31.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:31.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.459][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:31.460][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:31.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.461][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.463][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:31.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:31.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.466][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:31.467][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:31.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.468][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.470][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:31.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:31.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.473][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:31.474][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:31.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.476][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.477][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:31.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:31.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.480][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:31.481][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:31.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.483][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.484][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:31.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:31.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.487][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:31.488][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:31.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.489][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.490][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:31.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:31.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.494][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-04 16:02:31.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:31.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:31.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:31.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:31.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:31.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.503][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-04 16:02:31.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:31.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:31.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:31.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.510][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:31.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:31.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.513][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-04 16:02:31.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:31.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:31.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:31.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:31.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:31.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.523][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-04 16:02:31.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:31.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:31.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:31.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:31.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:31.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.532][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-04 16:02:31.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:31.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:31.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:31.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:31.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:31.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.542][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:31.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:31.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:31.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:31.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.549][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:31.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:31.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:31.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:31.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.556][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:31.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:31.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:31.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:31.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.563][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:31.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:31.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:31.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:31.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:31.570][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:31.571][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:31.572][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:31.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:31.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:31.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:31.579][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:31.581][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:31.582][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:31.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.584][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.585][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:31.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:31.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.588][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:31.589][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:31.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.591][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.592][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:31.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:31.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.596][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:31.597][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:31.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.599][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:31.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:31.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.603][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:31.614][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:31.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.616][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.618][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:31.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:31.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.621][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:31.622][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:31.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.624][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.625][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:31.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:31.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.628][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:31.629][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:31.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.630][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:31.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:31.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.635][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:31.636][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:31.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.638][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.639][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:31.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:31.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.642][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:31.643][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:31.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.644][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.646][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:31.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:31.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.649][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:31.650][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:31.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.652][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.653][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:31.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:31.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.656][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:31.657][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:31.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.658][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:31.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:31.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.663][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:31.664][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:31.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.665][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.666][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:31.667][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:31.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.669][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:31.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:31.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.673][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:31.674][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:31.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.675][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.677][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:31.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:31.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.680][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:31.680][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:31.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.682][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.683][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:31.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:31.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.686][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-04 16:02:31.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:31.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:31.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:31.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.692][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:31.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:31.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.695][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-04 16:02:31.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:31.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:31.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:31.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.701][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:31.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:31.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.704][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-04 16:02:31.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:31.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.707][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:31.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:31.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.710][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:31.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:31.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.713][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-04 16:02:31.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:31.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.716][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:31.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:31.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:31.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:31.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.722][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-04 16:02:31.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:31.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:31.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:31.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.728][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:31.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:31.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.731][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:31.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:31.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.734][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:31.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:31.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.737][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:31.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:31.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:31.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:31.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.743][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:31.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:31.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:31.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:31.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.749][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:31.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:31.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:31.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:31.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:31.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:31.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:31.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:31.762][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:31.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:31.764][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:31.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:31.767][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:31.767][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:31.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.769][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:31.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:31.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.773][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:31.774][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:31.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.776][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:31.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:31.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.780][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:31.780][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:31.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.782][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:31.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:31.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.786][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:31.787][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:31.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.788][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:31.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:31.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.793][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:31.794][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:31.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.795][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.796][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:31.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:31.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.799][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:31.800][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:31.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.801][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.802][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:31.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:31.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.805][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:31.806][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:31.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.808][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.809][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:31.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:31.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.812][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:31.813][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:31.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.814][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.815][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:31.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:31.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.818][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:31.819][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:31.820][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.821][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.822][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:31.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:31.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.825][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:31.826][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:31.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.827][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.828][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:31.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:31.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.831][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:31.832][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:31.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.834][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.835][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:31.835][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:31.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.837][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.838][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:31.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:31.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.841][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:31.842][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:31.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.844][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.845][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:31.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:31.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.848][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:31.849][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:31.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.850][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.851][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:31.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:31.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.855][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-04 16:02:31.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:31.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:31.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:31.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:31.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:31.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.864][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-04 16:02:31.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:31.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:31.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:31.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:31.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:31.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.874][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-04 16:02:31.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:31.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:31.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:31.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:31.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:31.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.890][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-04 16:02:31.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:31.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.894][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:31.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:31.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:31.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:31.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.900][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-04 16:02:31.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:31.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.903][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:31.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:31.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.907][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:31.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:31.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.910][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:31.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:31.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.913][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:31.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:31.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.916][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:31.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:31.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:31.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:31.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.922][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:31.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:31.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.926][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:31.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:31.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:31.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:31.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:31.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:31.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.935][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:31.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:31.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.938][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:31.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:31.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:31.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:31.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:31.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:31.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:31.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:31.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:31.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:31.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:31.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:31.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:31.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:31.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.959][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:31.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:31.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:31.962][self$createEntryFromContent] Accession numbers: 171316040, 171260713, 171260621.
biodb.DEBUG[2024-05-04 16:02:31.963][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:31.965][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:31.965][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:31.966][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:31.971][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:31.971][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:31.972][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:31.973][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:31.974][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:31.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:31.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.977][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:31.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:31.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.980][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:31.981][private$selectFields]
biodb.TRACE[2024-05-04 16:02:31.982][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:31.982][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:31.983][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:31.984][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:31.985][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:31.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.986][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.987][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:31.988][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:31.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.989][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.990][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:31.991][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:31.991][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:31.992][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:31.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.994][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.994][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:31.995][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:31.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:31.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:31.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:31.999][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.002][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.005][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171316040].
biodb.DEBUG[2024-05-04 16:02:32.006][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:32.007][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:32.008][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:32.013][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:32.013][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:32.014][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:32.015][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:32.016][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.019][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.022][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:32.023][private$selectFields]
biodb.TRACE[2024-05-04 16:02:32.023][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:32.024][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:32.025][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:32.026][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.027][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.028][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.029][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.030][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.031][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.032][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:32.033][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:32.034][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.035][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.036][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.037][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:32.038][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.041][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.044][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.048][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171260713].
biodb.DEBUG[2024-05-04 16:02:32.049][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:32.049][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:32.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:32.055][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:32.056][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:32.056][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:32.057][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:32.058][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.061][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.064][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:32.065][private$selectFields]
biodb.TRACE[2024-05-04 16:02:32.066][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:32.066][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:32.067][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:32.068][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.069][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.070][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.071][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.072][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.073][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.074][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:32.075][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:32.076][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.076][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.078][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.078][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:32.079][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.082][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.086][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.089][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171260621].
biodb.DEBUG[2024-05-04 16:02:32.090][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:32.091][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-05-04 16:02:32.098][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-04 16:02:32.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-04 16:02:32.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.102][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-04 16:02:32.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-04 16:02:32.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-04 16:02:32.108][biodb::testThat]
biodb.INFO [2024-05-04 16:02:32.109][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-05-04 16:02:32.110][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:02:32.110][biodb::testThat]
biodb.TRACE[2024-05-04 16:02:32.113][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-04 16:02:32.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-04 16:02:32.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.116][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-04 16:02:32.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-04 16:02:32.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.119][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:32.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:32.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.122][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:32.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:32.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.125][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:32.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:32.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.129][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:32.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:32.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:32.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:32.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:32.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:32.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:32.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:32.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.142][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:32.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:32.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:32.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:32.148][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:32.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:32.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:32.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:32.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:32.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:32.168][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364:204.2430636[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:32.171][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:32.172][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:32.173][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364%3A204.2430636%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-05-04 16:02:32.248][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364%3A204.2430636%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-04 16:02:32.249][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-04 16:02:32.250][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364%3A204.2430636%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-04 16:02:32.252][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364%3A204.2430636%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-05-04 16:02:32.338][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:02:32.340][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/aa9cb23a1eb4b2596e7c242b1c35f744.content"
biodb.TRACE[2024-05-04 16:02:32.343][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/aa9cb23a1eb4b2596e7c242b1c35f744.request"
biodb.DEBUG[2024-05-04 16:02:32.345][private$loadEntries] Creating entries from ids [2]: "171326496, 171236632".
biodb.DEBUG[2024-05-04 16:02:32.346][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-05-04 16:02:32.348][cch$loadFileContent] Trying to load 2 files from cache: [2]: "171326496, 171236632".
biodb.TRACE[2024-05-04 16:02:32.349][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-05-04 16:02:32.350][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-04 16:02:32.351][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-04 16:02:32.351][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-04 16:02:32.352][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-04 16:02:32.353][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-04 16:02:32.354][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-05-04 16:02:32.356][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171326496,171236632/XML".
biodb.DEBUG[2024-05-04 16:02:32.357][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:32.358][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:32.359][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171326496,171236632/XML".
biodb.TRACE[2024-05-04 16:02:32.477][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171326496,171236632/XML).
biodb.TRACE[2024-05-04 16:02:32.700][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171326496.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171236632.xml"
biodb.DEBUG[2024-05-04 16:02:32.702][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-04 16:02:32.703][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-05-04 16:02:32.704][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-05-04 16:02:32.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:32.707][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:32.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:32.712][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:32.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:32.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:32.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:32.716][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:32.717][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:32.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.718][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.720][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:32.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:32.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.723][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:32.724][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:32.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.725][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:32.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:32.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.729][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:32.730][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:32.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.731][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:32.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:32.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.736][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:32.737][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:32.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.738][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:32.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:32.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.742][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:32.743][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:32.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.745][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.746][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:32.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:32.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.749][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:32.750][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:32.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.752][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.753][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:32.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:32.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.756][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:32.757][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:32.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.758][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.760][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:32.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:32.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.763][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:32.764][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:32.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.765][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.767][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:32.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:32.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.770][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:32.771][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:32.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.772][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.773][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:32.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:32.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.777][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:32.778][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:32.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.779][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:32.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:32.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.784][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:32.784][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:32.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.786][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.787][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:32.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:32.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.790][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:32.791][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:32.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.793][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.794][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:32.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:32.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.797][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:32.798][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:32.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.799][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.800][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:32.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:32.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.803][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:32.804][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:32.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.805][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.806][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:32.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:32.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.810][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-04 16:02:32.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:32.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:32.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:32.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.816][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:32.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:32.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.819][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-04 16:02:32.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:32.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:32.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:32.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.826][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:32.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:32.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.829][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-04 16:02:32.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:32.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.832][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:32.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:32.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.836][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:32.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:32.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.839][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-04 16:02:32.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:32.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.842][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:32.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:32.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:32.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:32.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.849][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-04 16:02:32.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:32.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:32.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:32.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.855][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:32.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:32.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.859][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:32.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:32.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.862][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.865][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:32.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:32.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.872][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:32.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:32.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:32.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:32.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:32.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:32.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:32.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:32.885][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:32.886][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:32.887][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:32.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:32.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:32.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:32.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:32.896][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:32.897][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:32.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.898][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:32.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:32.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.903][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:32.903][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:32.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.905][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:32.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:32.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.909][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:32.910][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:32.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.912][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:32.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:32.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.916][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:32.917][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:32.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.918][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:32.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:32.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.923][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:32.924][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:32.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.925][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:32.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:32.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.929][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:32.930][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:32.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.931][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.932][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:32.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:32.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.936][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:32.937][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:32.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.938][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.939][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:32.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:32.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.954][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:32.955][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:32.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.956][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.957][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:32.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:32.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.961][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:32.962][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:32.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.963][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.964][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:32.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:32.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.968][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:32.968][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:32.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.970][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.971][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:32.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:32.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.974][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:32.975][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:32.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.977][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.978][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:32.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:32.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.981][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:32.982][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:32.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.984][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.985][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:32.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:32.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.988][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:32.989][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:32.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.990][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.991][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:32.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:32.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.994][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:32.995][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:32.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:32.997][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:32.998][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:32.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:33.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.002][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-04 16:02:33.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:33.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:33.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:33.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:33.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:33.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.011][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-04 16:02:33.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:33.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:33.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:33.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:33.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:33.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.020][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-04 16:02:33.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:33.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:33.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:33.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.026][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:33.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:33.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.029][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-04 16:02:33.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:33.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.032][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:33.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:33.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:33.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:33.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.038][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-04 16:02:33.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:33.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.041][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:33.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:33.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.044][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:33.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:33.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.047][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:33.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:33.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.050][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.053][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:33.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:33.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.059][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:33.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:33.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.065][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:33.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:33.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:33.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:33.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:33.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:33.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:33.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:33.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.077][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:33.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:33.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.080][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:33.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:33.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.083][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:33.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:33.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.087][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:33.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:33.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:33.090][self$createEntryFromContent] Accession numbers: 171326496, 171236632.
biodb.DEBUG[2024-05-04 16:02:33.090][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:33.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:33.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:33.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:33.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:33.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:33.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:33.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:33.101][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.104][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.107][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:33.108][private$selectFields]
biodb.TRACE[2024-05-04 16:02:33.109][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:33.109][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:33.110][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:33.111][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.112][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.113][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.114][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.115][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.117][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.117][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:33.118][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:33.119][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.120][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.121][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.122][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:33.123][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.126][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.129][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.133][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171326497].
biodb.DEBUG[2024-05-04 16:02:33.134][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:33.134][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:33.135][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:33.140][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:33.140][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:33.141][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:33.142][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:33.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.146][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.149][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:33.149][private$selectFields]
biodb.TRACE[2024-05-04 16:02:33.150][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:33.151][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:33.152][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:33.152][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.153][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.155][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.155][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.156][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.157][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.158][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:33.159][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:33.160][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.161][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.162][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.163][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:33.164][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.167][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.170][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.173][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171326496].
biodb.DEBUG[2024-05-04 16:02:33.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:33.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:33.175][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:33.180][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:33.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:33.181][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:33.182][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:33.183][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.186][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.189][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:33.190][private$selectFields]
biodb.TRACE[2024-05-04 16:02:33.191][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:33.191][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:33.192][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:33.193][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.194][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.195][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.196][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.197][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.198][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.199][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:33.200][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:33.200][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.201][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.202][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.203][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:33.204][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.207][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.211][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:33.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.220][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171236632].
biodb.DEBUG[2024-05-04 16:02:33.221][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:33.222][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:33.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:33.224][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:33.225][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:33.230][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:33.231][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:33.232][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:33.232][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:33.238][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715:226.19339285[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:33.240][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:33.241][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:33.243][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-05-04 16:02:33.317][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-04 16:02:33.318][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-04 16:02:33.319][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-04 16:02:33.320][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-05-04 16:02:33.449][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:02:33.450][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.content"
biodb.TRACE[2024-05-04 16:02:33.454][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.request"
biodb.DEBUG[2024-05-04 16:02:33.456][private$loadEntries] Creating entries from ids [2]: "171226048, 171219496".
biodb.DEBUG[2024-05-04 16:02:33.456][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-05-04 16:02:33.458][cch$loadFileContent] Trying to load 2 files from cache: [2]: "171226048, 171219496".
biodb.TRACE[2024-05-04 16:02:33.459][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-05-04 16:02:33.459][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-04 16:02:33.460][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-04 16:02:33.461][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-04 16:02:33.462][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-04 16:02:33.463][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-04 16:02:33.463][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-05-04 16:02:33.465][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171226048,171219496/XML".
biodb.DEBUG[2024-05-04 16:02:33.467][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:33.467][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:33.469][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171226048,171219496/XML".
biodb.TRACE[2024-05-04 16:02:33.627][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171226048,171219496/XML).
biodb.TRACE[2024-05-04 16:02:33.876][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171226048.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171219496.xml"
biodb.DEBUG[2024-05-04 16:02:33.878][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-04 16:02:33.879][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-05-04 16:02:33.880][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-05-04 16:02:33.882][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:33.882][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:33.883][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:33.888][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:33.888][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:33.889][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:33.890][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:33.892][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:33.893][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:33.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.894][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:33.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:33.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.898][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:33.899][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:33.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.901][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.902][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:33.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:33.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.905][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:33.906][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:33.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.907][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:33.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:33.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.912][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:33.912][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:33.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.914][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.915][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:33.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:33.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.918][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:33.919][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:33.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.921][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:33.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:33.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.925][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:33.926][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:33.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.927][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.928][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:33.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:33.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.932][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:33.932][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:33.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.934][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.935][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:33.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:33.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.938][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:33.939][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:33.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.941][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.942][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:33.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:33.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.945][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:33.946][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:33.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.947][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.948][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:33.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:33.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.951][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:33.952][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:33.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.953][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:33.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:33.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.958][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:33.959][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:33.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.960][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.961][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:33.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:33.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.964][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:33.965][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:33.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.966][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:33.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:33.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.971][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:33.971][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:33.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.973][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.974][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:33.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:33.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.977][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:33.978][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:33.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.980][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.981][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:33.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:33.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.984][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-04 16:02:33.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:33.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:33.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:33.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.990][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:33.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:33.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.993][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-04 16:02:33.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:33.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:33.997][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:33.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:33.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:33.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.000][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:34.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:34.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.003][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-04 16:02:34.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:34.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.006][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:34.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:34.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.009][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:34.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:34.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.012][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-04 16:02:34.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:34.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.015][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:34.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:34.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.018][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:34.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:34.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.021][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-04 16:02:34.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:34.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.024][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:34.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:34.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:34.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:34.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.030][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:34.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:34.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.033][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.036][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:34.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:34.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.042][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:34.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:34.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:34.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:34.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.051][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:34.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:34.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:34.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:34.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:34.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:34.060][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:34.061][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:34.062][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:34.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:34.065][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:34.065][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:34.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.067][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.068][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:34.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:34.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.071][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:34.072][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:34.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.073][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.074][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:34.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:34.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.077][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:34.078][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:34.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.080][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:34.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:34.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.084][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:34.085][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:34.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.086][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:34.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:34.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.090][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:34.096][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:34.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.103][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:34.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:34.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.108][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:34.109][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:34.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.110][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.111][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:34.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:34.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.115][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:34.116][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:34.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.117][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.118][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:34.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:34.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.122][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:34.122][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:34.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.124][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.125][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:34.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:34.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.128][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:34.129][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:34.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.131][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.132][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:34.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:34.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.135][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:34.136][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:34.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.137][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.139][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:34.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:34.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.142][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:34.143][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:34.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.144][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.145][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:34.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:34.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.148][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:34.149][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:34.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.151][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:34.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:34.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.155][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:34.156][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:34.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.157][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.158][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:34.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:34.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.161][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:34.162][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:34.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.163][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.164][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:34.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:34.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.168][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-04 16:02:34.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:34.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:34.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:34.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:34.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:34.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.177][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-04 16:02:34.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:34.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:34.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:34.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:34.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:34.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.187][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-04 16:02:34.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:34.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.190][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:34.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:34.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:34.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:34.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.197][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-04 16:02:34.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:34.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:34.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:34.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:34.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:34.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.207][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-04 16:02:34.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:34.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:34.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:34.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:34.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:34.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.217][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:34.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:34.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.220][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.223][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:34.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:34.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.230][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:34.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:34.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:34.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:34.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:34.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:34.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:34.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:34.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:34.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:34.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:34.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:34.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.252][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:34.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:34.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:34.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:34.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:34.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:34.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:34.262][self$createEntryFromContent] Accession numbers: 171226048, 171219496.
biodb.DEBUG[2024-05-04 16:02:34.263][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:34.264][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:34.265][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:34.266][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:34.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:34.271][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:34.272][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:34.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:34.274][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.280][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:34.281][private$selectFields]
biodb.TRACE[2024-05-04 16:02:34.282][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:34.282][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:34.283][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:34.284][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.285][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.286][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.287][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.288][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.289][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.290][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:34.291][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:34.292][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.292][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.294][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.295][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:34.296][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.299][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.302][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.305][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171341956].
biodb.DEBUG[2024-05-04 16:02:34.306][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:34.307][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:34.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:34.312][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:34.313][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:34.314][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:34.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:34.315][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.318][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.321][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:34.322][private$selectFields]
biodb.TRACE[2024-05-04 16:02:34.323][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:34.324][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:34.324][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:34.325][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.326][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.328][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.329][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.329][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.331][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.332][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:34.333][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:34.333][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.334][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.336][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.337][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:34.338][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.341][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.344][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.348][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171226048].
biodb.DEBUG[2024-05-04 16:02:34.348][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:34.349][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:34.350][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:34.355][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:34.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:34.356][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:34.357][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:34.358][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.361][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.364][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:34.365][private$selectFields]
biodb.TRACE[2024-05-04 16:02:34.366][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:34.367][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:34.367][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:34.368][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.369][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.371][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.371][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.378][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.380][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.381][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:34.382][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:34.383][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.383][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.385][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.386][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:34.386][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.389][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.393][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:34.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.396][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171219496].
biodb.DEBUG[2024-05-04 16:02:34.397][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:34.398][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-05-04 16:02:34.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:34.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:34.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.409][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:34.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:34.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.412][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:34.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:34.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.416][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:34.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:34.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.419][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:34.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:34.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.422][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:34.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:34.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.425][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:34.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:34.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:34.428][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:34.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:34.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:34.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:34.433][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:34.434][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:34.435][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:34.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:34.440][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:34.441][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:34.442][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:34.447][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254:204.126644913746[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:34.449][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:34.450][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:34.452][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254%3A204.126644913746%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-05-04 16:02:34.527][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254%3A204.126644913746%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-04 16:02:34.528][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-04 16:02:34.529][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254%3A204.126644913746%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-04 16:02:34.530][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254%3A204.126644913746%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-05-04 16:02:34.620][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:02:34.622][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/3123cd8cb57ce8b130489fc490c416f0.content"
biodb.TRACE[2024-05-04 16:02:34.625][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/3123cd8cb57ce8b130489fc490c416f0.request"
biodb.DEBUG[2024-05-04 16:02:34.628][private$loadEntries] Creating entries from ids [1]: "171268275".
biodb.DEBUG[2024-05-04 16:02:34.628][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-04 16:02:34.630][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171268275".
biodb.TRACE[2024-05-04 16:02:34.631][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-04 16:02:34.632][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-04 16:02:34.632][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-04 16:02:34.633][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-04 16:02:34.634][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-04 16:02:34.635][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-04 16:02:34.636][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-04 16:02:34.637][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171268275/XML".
biodb.DEBUG[2024-05-04 16:02:34.639][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:34.640][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:34.641][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171268275/XML".
biodb.TRACE[2024-05-04 16:02:34.825][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171268275/XML).
biodb.TRACE[2024-05-04 16:02:34.988][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171268275.xml"
biodb.DEBUG[2024-05-04 16:02:34.989][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-04 16:02:34.991][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-05-04 16:02:34.991][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-05-04 16:02:34.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:34.994][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:34.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:34.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:35.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:35.000][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:35.001][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:35.004][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:35.004][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:35.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.006][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.007][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:35.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:35.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.010][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:35.011][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:35.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.012][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.013][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:35.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:35.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.017][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:35.017][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:35.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.019][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:35.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:35.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.023][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:35.024][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:35.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.026][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:35.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:35.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.030][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:35.031][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:35.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.032][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:35.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:35.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.037][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:35.038][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:35.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.039][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:35.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:35.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.044][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:35.044][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:35.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.046][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.047][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:35.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:35.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.050][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:35.051][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:35.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.053][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.054][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:35.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:35.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.057][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:35.058][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:35.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.059][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.060][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:35.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:35.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.063][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:35.064][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:35.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.065][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.066][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:35.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:35.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.069][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:35.070][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:35.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.072][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.073][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:35.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:35.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.076][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:35.077][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:35.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.078][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.079][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:35.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:35.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.082][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:35.083][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:35.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.085][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.086][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:35.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:35.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.089][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:35.089][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:35.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.091][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.092][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:35.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:35.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.095][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-04 16:02:35.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:35.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:35.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:35.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:35.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:35.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.104][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-04 16:02:35.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:35.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.107][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:35.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:35.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.110][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:35.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:35.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.113][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-04 16:02:35.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:35.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.116][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:35.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:35.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.119][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:35.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:35.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.122][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-04 16:02:35.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:35.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.125][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:35.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:35.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.128][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:35.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:35.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.131][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-04 16:02:35.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:35.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.134][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:35.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:35.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.137][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:35.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:35.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.140][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:35.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:35.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.146][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:35.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:35.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.152][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:35.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:35.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:35.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:35.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:35.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:35.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:35.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:35.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.179][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:35.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:35.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:35.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:35.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:35.185][self$createEntryFromContent] Accession numbers: 171268275.
biodb.DEBUG[2024-05-04 16:02:35.185][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:35.187][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:35.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:35.188][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:35.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:35.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:35.195][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:35.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:35.196][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.199][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.203][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:35.203][private$selectFields]
biodb.TRACE[2024-05-04 16:02:35.204][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:35.205][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:35.206][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:35.207][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.208][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.209][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.210][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.211][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.212][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.213][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:35.214][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:35.215][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.215][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.217][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.218][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:35.218][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.222][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.225][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.228][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171364948].
biodb.DEBUG[2024-05-04 16:02:35.229][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:35.230][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:35.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:35.235][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:35.236][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:35.237][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:35.237][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:35.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.242][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.245][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:35.246][private$selectFields]
biodb.TRACE[2024-05-04 16:02:35.246][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:35.247][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:35.248][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:35.249][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.249][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.251][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.252][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.253][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.254][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.255][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:35.256][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:35.256][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.257][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.259][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.260][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:35.260][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.264][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.267][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.270][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171326566].
biodb.DEBUG[2024-05-04 16:02:35.271][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:35.271][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:35.272][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:35.277][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:35.278][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:35.279][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:35.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:35.280][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.284][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.287][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:35.287][private$selectFields]
biodb.TRACE[2024-05-04 16:02:35.288][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:35.289][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:35.290][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:35.290][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.291][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.293][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.294][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.294][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.296][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.297][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:35.297][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:35.298][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.299][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.300][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.301][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:35.302][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.305][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.308][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.311][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171268275].
biodb.DEBUG[2024-05-04 16:02:35.312][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:35.313][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:35.314][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:35.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:35.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:35.320][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:35.321][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:35.322][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:35.322][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:35.328][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429:226.062362304571[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:35.330][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:35.331][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:35.333][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-05-04 16:02:35.407][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-04 16:02:35.408][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-04 16:02:35.409][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-04 16:02:35.410][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-05-04 16:02:35.501][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:02:35.502][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.content"
biodb.TRACE[2024-05-04 16:02:35.506][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.request"
biodb.DEBUG[2024-05-04 16:02:35.507][private$loadEntries] Creating entries from ids [1]: "171217291".
biodb.DEBUG[2024-05-04 16:02:35.508][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-04 16:02:35.509][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171217291".
biodb.TRACE[2024-05-04 16:02:35.510][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-04 16:02:35.511][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-04 16:02:35.512][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-04 16:02:35.513][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-04 16:02:35.514][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-04 16:02:35.514][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-04 16:02:35.515][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-04 16:02:35.517][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171217291/XML".
biodb.DEBUG[2024-05-04 16:02:35.518][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:35.519][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:35.520][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171217291/XML".
biodb.TRACE[2024-05-04 16:02:35.651][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171217291/XML).
biodb.TRACE[2024-05-04 16:02:35.800][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171217291.xml"
biodb.DEBUG[2024-05-04 16:02:35.802][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-04 16:02:35.803][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-05-04 16:02:35.804][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-05-04 16:02:35.805][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:35.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:35.806][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:35.811][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:35.812][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:35.812][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:35.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:35.815][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:35.816][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:35.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.818][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:35.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:35.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.822][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:35.823][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:35.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.824][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:35.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:35.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.828][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:35.829][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:35.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.831][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.832][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:35.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:35.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.835][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:35.835][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:35.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.837][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:35.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:35.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.841][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:35.842][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:35.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.843][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:35.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:35.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.847][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:35.848][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:35.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.849][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.850][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:35.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:35.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.854][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:35.854][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:35.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.856][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.857][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:35.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:35.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.860][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:35.861][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:35.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.862][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.863][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:35.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:35.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.867][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:35.867][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:35.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.869][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.870][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:35.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:35.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.883][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:35.884][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:35.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.886][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.887][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:35.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:35.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.890][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:35.891][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:35.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.892][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.893][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:35.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:35.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.897][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:35.897][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:35.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.899][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.900][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:35.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:35.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.903][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:35.904][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:35.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.906][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.907][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:35.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:35.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.910][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:35.911][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:35.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.912][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.913][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:35.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:35.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.916][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-04 16:02:35.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:35.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:35.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:35.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:35.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:35.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.926][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-04 16:02:35.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:35.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:35.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:35.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.932][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:35.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:35.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.935][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-04 16:02:35.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:35.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.938][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:35.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:35.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.940][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:35.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:35.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.943][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-04 16:02:35.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:35.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.946][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:35.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:35.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.949][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:35.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:35.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.952][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-04 16:02:35.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:35.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.955][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:35.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:35.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:35.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:35.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.961][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:35.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:35.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.964][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.967][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:35.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:35.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.973][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:35.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.976][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:35.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:35.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:35.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:35.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:35.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:35.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:35.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:35.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.988][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:35.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:35.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.991][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:35.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:35.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:35.994][self$createEntryFromContent] Accession numbers: 171217291.
biodb.DEBUG[2024-05-04 16:02:35.995][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:35.997][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:35.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:35.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:36.003][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:36.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:36.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:36.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:36.006][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.009][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.012][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.013][private$selectFields]
biodb.TRACE[2024-05-04 16:02:36.013][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:36.014][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:36.015][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.015][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.016][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.018][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.018][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.019][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.021][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.021][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.022][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.023][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.024][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.025][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.026][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:36.027][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.030][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.033][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.036][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171226048].
biodb.DEBUG[2024-05-04 16:02:36.037][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:36.037][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:36.038][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:36.043][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:36.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:36.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:36.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:36.046][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.049][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.052][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.053][private$selectFields]
biodb.TRACE[2024-05-04 16:02:36.053][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:36.054][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:36.055][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.056][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.056][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.058][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.059][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.059][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.061][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.062][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.062][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.063][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.064][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.065][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.066][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:36.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.073][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.076][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171219496].
biodb.DEBUG[2024-05-04 16:02:36.077][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:36.078][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:36.079][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:36.083][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:36.084][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:36.085][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:36.085][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:36.086][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.089][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.093][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.093][private$selectFields]
biodb.TRACE[2024-05-04 16:02:36.094][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:36.095][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:36.095][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.096][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.097][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.098][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.099][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.100][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.101][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.102][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.103][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.104][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.104][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.106][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.107][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:36.107][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.110][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.113][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.117][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171217291].
biodb.DEBUG[2024-05-04 16:02:36.117][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:36.118][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-05-04 16:02:36.126][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-04 16:02:36.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-04 16:02:36.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.129][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-04 16:02:36.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-04 16:02:36.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-04 16:02:36.135][biodb::testThat]
biodb.INFO [2024-05-04 16:02:36.136][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-05-04 16:02:36.137][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:02:36.137][biodb::testThat]
biodb.TRACE[2024-05-04 16:02:36.145][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-04 16:02:36.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-04 16:02:36.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.149][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-04 16:02:36.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-04 16:02:36.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.152][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:36.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:36.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:36.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:36.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.158][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:36.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:36.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.162][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:36.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:36.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.165][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:36.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:36.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.168][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:36.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:36.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.172][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:36.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:36.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.175][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:36.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:36.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:36.182][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:36.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:36.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:36.188][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:36.188][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:36.189][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:36.190][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:36.195][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:36.197][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:02:36.198][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-05-04 16:02:36.199][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:02:36.200][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-05-04 16:02:36.202][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:36.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:36.204][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:36.204][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:36.209][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:36.209][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:36.210][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:36.211][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:36.211][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.214][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.218][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.218][private$selectFields]
biodb.TRACE[2024-05-04 16:02:36.219][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:36.220][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:36.221][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.222][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.222][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.224][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.225][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.226][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.227][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.228][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.229][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.229][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.230][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.232][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.232][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:36.233][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.240][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.243][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171364948].
biodb.DEBUG[2024-05-04 16:02:36.244][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:36.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:36.245][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:36.250][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:36.251][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:36.251][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:36.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:36.253][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.256][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.260][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.260][private$selectFields]
biodb.TRACE[2024-05-04 16:02:36.261][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:36.262][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:36.263][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.264][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.264][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.266][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.267][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.268][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.269][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.270][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.271][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.272][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.272][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.274][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.275][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:36.276][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.279][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.282][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.285][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171334113].
biodb.DEBUG[2024-05-04 16:02:36.286][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:36.286][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:36.287][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:36.292][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:36.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:36.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:36.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:36.295][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.298][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.301][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.301][private$selectFields]
biodb.TRACE[2024-05-04 16:02:36.302][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:36.303][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:36.304][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.304][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.305][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.307][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.307][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.308][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.310][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.310][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.311][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.312][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.313][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.314][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.315][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:36.316][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.322][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.326][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171326497].
biodb.DEBUG[2024-05-04 16:02:36.326][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:36.327][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:36.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:36.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:36.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:36.335][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:36.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:36.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:36.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:36.342][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:36.344][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:02:36.345][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-05-04 16:02:36.346][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:02:36.348][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-05-04 16:02:36.349][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:36.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:36.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:36.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:36.356][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:36.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:36.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:36.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:36.359][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.362][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.366][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.366][private$selectFields]
biodb.TRACE[2024-05-04 16:02:36.367][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:36.368][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:36.368][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.369][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.370][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.372][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.372][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.373][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.375][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.375][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.376][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.377][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.378][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.379][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.380][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:36.381][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.384][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.387][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.390][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171341956].
biodb.DEBUG[2024-05-04 16:02:36.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:36.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:36.392][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:36.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:36.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:36.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:36.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:36.400][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.406][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.407][private$selectFields]
biodb.TRACE[2024-05-04 16:02:36.408][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:36.408][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:36.409][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.410][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.411][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.412][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.413][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.420][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.422][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.423][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.424][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.424][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.425][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.427][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.427][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:36.428][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.431][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.435][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.438][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171316324].
biodb.DEBUG[2024-05-04 16:02:36.439][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:36.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:36.440][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:36.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:36.445][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:36.446][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:36.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:36.448][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.451][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.454][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.455][private$selectFields]
biodb.TRACE[2024-05-04 16:02:36.455][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:36.456][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:36.457][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.458][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.458][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.460][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.461][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.461][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.463][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.464][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.464][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.465][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.466][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.467][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.468][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:36.469][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.472][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.475][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.478][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171316323].
biodb.DEBUG[2024-05-04 16:02:36.479][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:36.480][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-05-04 16:02:36.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:36.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:36.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:36.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:36.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:36.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:36.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.507][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:36.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:36.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:36.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:36.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.513][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:36.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:36.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.516][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:36.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:36.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:36.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:36.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:36.525][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:36.526][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:36.526][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:36.531][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:36.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:36.532][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:36.533][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:36.539][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:36.541][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:02:36.542][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-05-04 16:02:36.543][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:02:36.544][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-05-04 16:02:36.546][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:36.547][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:36.548][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:36.548][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:36.553][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:36.554][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:36.554][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:36.555][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:36.556][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.562][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.563][private$selectFields]
biodb.TRACE[2024-05-04 16:02:36.564][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:36.564][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:36.565][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.566][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.567][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.568][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.569][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.570][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.571][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.572][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.573][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.573][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.574][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.576][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.576][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:36.577][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.580][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.583][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.586][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171364948].
biodb.DEBUG[2024-05-04 16:02:36.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:36.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:36.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:36.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:36.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:36.594][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:36.595][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:36.596][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.602][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.603][private$selectFields]
biodb.TRACE[2024-05-04 16:02:36.604][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:36.605][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:36.605][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.606][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.607][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.608][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.609][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.610][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.611][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.612][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.613][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.614][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.614][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.616][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.616][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:36.617][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.620][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.623][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.627][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171338202].
biodb.DEBUG[2024-05-04 16:02:36.628][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:36.628][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:36.629][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:36.633][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:36.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:36.635][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:36.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:36.637][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.640][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.643][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.644][private$selectFields]
biodb.TRACE[2024-05-04 16:02:36.644][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:36.645][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:36.646][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.647][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.648][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.649][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.650][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.651][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.652][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.653][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.654][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.654][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.655][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.656][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.657][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:36.658][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.661][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.664][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.667][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171326566].
biodb.DEBUG[2024-05-04 16:02:36.668][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:36.669][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:36.670][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:36.671][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:36.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:36.676][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:36.677][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:36.678][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:36.678][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:36.683][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:36.692][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:02:36.693][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-05-04 16:02:36.695][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:02:36.696][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-05-04 16:02:36.697][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:36.699][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:36.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:36.700][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:36.705][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:36.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:36.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:36.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:36.707][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.714][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.715][private$selectFields]
biodb.TRACE[2024-05-04 16:02:36.715][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:36.716][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:36.717][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.718][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.719][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.720][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.721][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.722][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.723][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.724][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.725][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.726][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.726][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.728][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.729][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:36.730][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.733][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.736][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.739][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171316040].
biodb.DEBUG[2024-05-04 16:02:36.740][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:36.741][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:36.741][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:36.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:36.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:36.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:36.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:36.749][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.752][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.755][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.756][private$selectFields]
biodb.TRACE[2024-05-04 16:02:36.757][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:36.758][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:36.758][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.759][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.760][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.761][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.762][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.763][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.765][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.765][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.766][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.767][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.768][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.769][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.770][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:36.771][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.774][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.776][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.780][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171260713].
biodb.DEBUG[2024-05-04 16:02:36.780][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:36.781][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:36.782][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:36.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:36.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:36.787][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:36.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:36.789][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.792][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.795][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.796][private$selectFields]
biodb.TRACE[2024-05-04 16:02:36.797][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:36.797][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:36.798][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.799][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.800][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.801][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.802][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.803][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.804][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.805][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.806][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:36.807][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.807][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.809][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.810][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:36.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.813][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.816][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:36.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.820][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171260621].
biodb.DEBUG[2024-05-04 16:02:36.820][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:36.821][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-05-04 16:02:36.839][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-04 16:02:36.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-04 16:02:36.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.842][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-04 16:02:36.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-04 16:02:36.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.847][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:36.848][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:36.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.850][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.850][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:36.851][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:36.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.853][ef$get] fields variable is a list.
biodb.INFO [2024-05-04 16:02:36.854][biodb::testThat]
biodb.INFO [2024-05-04 16:02:36.855][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2024-05-04 16:02:36.856][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:02:36.856][biodb::testThat]
biodb.TRACE[2024-05-04 16:02:36.859][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-04 16:02:36.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-04 16:02:36.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.862][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-04 16:02:36.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-04 16:02:36.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.865][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:36.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:36.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.868][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:36.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:36.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.871][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:36.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:36.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.874][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:36.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:36.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:36.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:36.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.881][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:36.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:36.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.884][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:36.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:36.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:36.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:36.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:36.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:36.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:36.891][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:36.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:36.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:36.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:36.898][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:36.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:36.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:36.905][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:36.907][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:36.908][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:36.909][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-05-04 16:02:36.984][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-04 16:02:36.985][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-04 16:02:36.986][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-04 16:02:36.987][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-05-04 16:02:37.173][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:02:37.175][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content"
biodb.TRACE[2024-05-04 16:02:37.178][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.request"
biodb.DEBUG[2024-05-04 16:02:37.179][private$loadEntries] Creating entries from ids [2]: "171358728, 171355522".
biodb.DEBUG[2024-05-04 16:02:37.180][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-05-04 16:02:37.181][cch$loadFileContent] Trying to load 2 files from cache: [2]: "171358728, 171355522".
biodb.TRACE[2024-05-04 16:02:37.182][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-05-04 16:02:37.183][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-04 16:02:37.184][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-04 16:02:37.185][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-04 16:02:37.186][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-04 16:02:37.186][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-04 16:02:37.187][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-05-04 16:02:37.188][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171358728,171355522/XML".
biodb.DEBUG[2024-05-04 16:02:37.190][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:37.191][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:37.192][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171358728,171355522/XML".
biodb.TRACE[2024-05-04 16:02:37.348][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171358728,171355522/XML).
biodb.TRACE[2024-05-04 16:02:37.575][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171358728.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171355522.xml"
biodb.DEBUG[2024-05-04 16:02:37.577][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-04 16:02:37.578][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-05-04 16:02:37.579][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-05-04 16:02:37.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:37.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:37.581][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:37.586][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:37.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:37.587][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:37.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:37.590][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:37.591][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:37.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.593][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.594][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:37.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:37.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.597][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:37.597][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:37.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.609][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.610][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:37.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:37.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.614][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:37.614][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:37.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.616][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:37.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:37.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.620][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:37.621][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:37.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.622][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:37.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:37.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.626][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:37.627][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:37.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.629][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:37.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:37.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.633][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:37.634][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:37.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.635][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:37.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:37.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.639][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:37.640][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:37.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.642][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.643][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:37.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:37.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.646][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:37.647][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:37.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.648][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.649][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:37.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:37.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.652][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:37.653][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:37.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.655][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.656][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:37.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:37.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.659][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:37.660][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:37.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.661][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.662][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:37.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:37.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.665][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:37.666][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:37.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.667][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.668][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:37.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:37.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.671][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:37.672][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:37.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.673][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.674][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:37.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:37.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.678][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:37.678][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:37.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.680][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.681][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:37.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:37.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.684][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:37.685][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:37.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.686][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.687][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:37.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:37.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.690][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-04 16:02:37.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:37.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.694][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:37.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:37.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.697][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:37.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:37.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.700][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-04 16:02:37.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:37.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.703][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:37.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:37.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.706][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:37.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:37.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.709][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-04 16:02:37.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:37.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.712][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:37.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:37.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.715][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:37.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:37.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.718][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-04 16:02:37.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:37.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:37.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:37.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:37.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:37.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.727][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-04 16:02:37.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:37.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:37.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:37.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:37.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:37.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.736][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:37.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:37.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.739][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:37.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:37.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.743][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:37.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:37.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.746][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:37.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:37.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.749][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:37.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:37.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:37.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:37.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:37.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:37.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:37.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:37.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:37.762][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:37.762][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:37.763][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:37.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:37.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:37.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:37.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:37.772][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:37.773][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:37.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.774][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.775][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:37.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:37.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.778][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:37.779][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:37.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.781][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.782][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:37.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:37.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.785][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:37.785][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:37.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.787][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.788][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:37.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:37.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.791][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:37.792][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:37.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.793][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:37.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:37.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.797][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:37.798][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:37.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.799][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.800][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:37.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:37.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.803][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:37.804][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:37.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.805][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:37.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:37.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.809][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:37.810][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:37.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.812][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.813][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:37.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:37.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.816][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:37.816][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:37.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.818][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.819][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:37.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:37.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.822][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:37.822][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:37.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.824][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.825][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:37.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:37.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.828][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:37.829][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:37.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.830][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.831][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:37.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:37.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.834][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:37.835][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:37.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.836][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.837][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:37.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:37.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.840][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:37.841][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:37.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.842][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.843][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:37.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:37.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.846][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:37.847][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:37.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.848][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.849][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:37.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:37.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.852][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:37.853][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:37.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.854][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.855][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:37.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:37.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.859][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-04 16:02:37.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:37.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.862][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:37.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:37.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:37.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:37.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.875][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-04 16:02:37.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:37.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.878][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:37.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:37.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:37.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:37.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.884][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-04 16:02:37.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:37.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.887][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:37.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:37.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:37.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:37.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.893][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-04 16:02:37.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:37.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.896][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:37.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:37.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.900][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:37.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:37.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.903][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-04 16:02:37.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:37.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:37.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:37.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:37.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:37.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.912][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:37.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:37.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.915][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:37.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:37.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.918][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:37.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:37.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:37.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:37.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:37.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:37.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:37.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:37.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:37.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:37.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:37.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:37.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:37.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:37.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.939][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:37.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:37.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.942][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:37.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:37.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.945][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:37.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:37.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:37.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:37.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:37.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:37.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:37.954][self$createEntryFromContent] Accession numbers: 171358728, 171355522.
biodb.DEBUG[2024-05-04 16:02:37.955][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:37.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:37.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:37.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:37.962][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:37.963][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:37.964][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:37.965][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:37.965][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:37.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:37.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.968][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:37.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:37.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.972][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:37.972][private$selectFields]
biodb.TRACE[2024-05-04 16:02:37.973][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:37.974][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:37.974][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:37.975][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:37.976][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:37.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.977][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.978][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:37.979][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:37.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.980][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.981][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:37.982][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:37.983][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:37.983][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:37.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.985][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.986][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:37.986][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:37.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:37.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.989][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:37.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:37.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.992][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:37.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:37.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:37.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:37.995][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171364948].
biodb.DEBUG[2024-05-04 16:02:37.996][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:37.997][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:37.998][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:38.002][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:38.003][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:38.004][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:38.004][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:38.005][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:38.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:38.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:38.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:38.008][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:38.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:38.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:38.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:38.011][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:38.012][private$selectFields]
biodb.TRACE[2024-05-04 16:02:38.013][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:38.013][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:38.014][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:38.015][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:38.016][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:38.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:38.017][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:38.018][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:38.019][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:38.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:38.020][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:38.021][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:38.022][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:38.022][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:38.023][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:38.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:38.024][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:38.025][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:38.026][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:38.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:38.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:38.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:38.029][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:38.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:38.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:38.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:38.032][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:38.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:38.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:38.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:38.035][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171358728].
biodb.DEBUG[2024-05-04 16:02:38.036][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:38.036][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:38.037][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:38.041][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:38.042][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:38.043][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:38.044][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:38.045][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:38.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:38.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:38.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:38.048][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:38.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:38.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:38.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:38.051][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:38.052][private$selectFields]
biodb.TRACE[2024-05-04 16:02:38.052][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:38.053][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:38.054][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:38.055][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:38.056][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:38.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:38.057][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:38.058][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:38.059][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:38.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:38.060][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:38.061][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:38.062][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:38.063][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:38.064][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:38.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:38.065][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:38.066][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:38.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:38.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:38.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:38.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:38.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:38.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:38.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:38.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:38.073][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:38.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:38.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:38.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:38.076][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171355522].
biodb.DEBUG[2024-05-04 16:02:38.077][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:38.078][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:38.079][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:38.080][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:38.081][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:38.086][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:38.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:38.087][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:38.088][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:38.094][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:38.096][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:38.097][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:38.098][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-05-04 16:02:38.173][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-04 16:02:38.174][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-04 16:02:38.175][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-04 16:02:38.177][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-05-04 16:02:38.272][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:02:38.274][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content"
biodb.TRACE[2024-05-04 16:02:38.277][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.request"
biodb.DEBUG[2024-05-04 16:02:38.278][private$loadEntries] Creating entries from ids [2]: "171364517, 171363645".
biodb.DEBUG[2024-05-04 16:02:38.279][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-05-04 16:02:38.281][cch$loadFileContent] Trying to load 2 files from cache: [2]: "171364517, 171363645".
biodb.TRACE[2024-05-04 16:02:38.281][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-05-04 16:02:38.282][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-04 16:02:38.283][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-04 16:02:38.284][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-04 16:02:38.285][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-04 16:02:38.286][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-04 16:02:38.287][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-05-04 16:02:38.288][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171364517,171363645/XML".
biodb.DEBUG[2024-05-04 16:02:38.290][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:38.291][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:38.292][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171364517,171363645/XML".
biodb.TRACE[2024-05-04 16:02:38.455][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171364517,171363645/XML).
biodb.TRACE[2024-05-04 16:02:39.806][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171364517.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171363645.xml"
biodb.DEBUG[2024-05-04 16:02:39.817][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-04 16:02:39.819][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-05-04 16:02:39.820][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-05-04 16:02:39.821][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:39.822][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:39.823][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:39.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:39.828][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:39.829][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:39.830][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:39.832][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:39.832][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:39.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.834][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:39.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:39.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.838][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:39.839][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:39.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.841][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.842][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:39.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:39.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.845][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:39.846][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:39.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.847][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:39.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:39.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.851][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:39.852][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:39.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.854][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.855][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:39.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:39.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.858][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:39.858][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:39.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.860][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:39.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:39.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.864][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:39.865][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:39.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.866][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.867][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:39.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:39.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.870][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:39.871][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:39.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.873][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.873][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:39.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:39.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.876][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:39.877][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:39.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.879][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.880][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:39.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:39.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.883][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:39.883][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:39.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.885][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.886][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:39.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:39.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.889][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:39.890][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:39.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.891][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.892][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:39.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:39.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.895][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:39.896][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:39.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.898][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.899][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:39.899][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:39.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.901][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:39.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:39.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.905][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:39.906][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:39.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.907][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.908][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:39.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:39.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.912][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:39.912][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:39.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.914][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.915][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:39.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:39.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.918][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-04 16:02:39.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:39.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:39.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:39.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:39.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:39.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.927][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-04 16:02:39.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:39.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:39.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:39.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:39.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:39.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.937][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-04 16:02:39.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:39.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.940][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:39.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:39.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.943][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:39.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:39.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.946][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-04 16:02:39.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:39.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.949][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:39.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:39.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.952][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:39.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:39.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.955][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-04 16:02:39.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:39.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:39.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:39.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:39.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:39.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.964][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:39.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:39.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.967][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:39.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:39.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.970][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:39.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:39.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.974][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:39.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:39.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.977][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:39.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:39.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.980][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:39.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:39.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.983][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:39.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:39.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:39.986][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:39.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:39.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:39.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:39.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:39.990][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:39.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:39.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:39.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:39.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:39.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:39.999][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:40.000][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:40.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.002][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.003][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:40.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:40.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.006][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:40.007][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:40.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.008][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.009][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:40.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:40.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.012][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:40.013][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:40.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.015][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.016][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:40.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:40.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.019][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:40.020][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:40.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.021][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.022][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:40.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:40.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.025][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:40.026][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:40.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.028][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:40.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:40.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.032][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:40.032][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:40.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.034][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:40.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:40.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.038][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:40.039][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:40.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.040][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.041][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:40.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:40.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.045][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:40.045][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:40.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.047][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.048][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:40.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:40.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.051][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:40.052][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:40.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.054][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.055][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:40.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:40.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.058][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:40.059][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:40.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.060][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.061][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:40.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:40.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.064][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:40.065][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:40.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.067][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.068][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:40.068][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:40.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.070][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.071][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:40.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:40.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.074][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:40.075][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:40.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.076][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.084][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:40.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:40.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.088][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:40.089][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:40.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.090][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.091][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:40.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:40.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.094][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-04 16:02:40.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:40.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:40.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:40.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:40.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:40.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.104][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-04 16:02:40.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:40.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.107][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:40.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:40.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.110][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:40.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:40.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.113][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-04 16:02:40.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:40.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:40.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:40.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:40.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:40.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.123][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-04 16:02:40.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:40.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.127][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:40.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:40.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:40.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:40.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.133][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-04 16:02:40.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:40.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:40.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:40.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:40.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:40.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.143][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:40.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:40.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.146][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.149][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:40.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:40.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.155][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:40.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:40.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:40.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:40.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:40.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:40.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.167][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:40.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:40.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:40.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:40.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:40.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:40.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.177][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:40.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:40.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.180][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:40.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:40.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:40.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:40.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:40.186][self$createEntryFromContent] Accession numbers: 171364517, 171363645.
biodb.DEBUG[2024-05-04 16:02:40.187][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:40.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:40.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:40.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:40.194][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:40.195][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:40.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:40.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:40.197][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.200][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.203][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.204][private$selectFields]
biodb.TRACE[2024-05-04 16:02:40.205][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:40.206][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:40.206][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.207][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.208][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.209][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.210][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.211][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.212][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.213][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.214][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.214][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.215][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.217][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.217][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:40.218][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.221][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.224][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.227][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171364517].
biodb.DEBUG[2024-05-04 16:02:40.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:40.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:40.229][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:40.234][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:40.235][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:40.235][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:40.236][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:40.237][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.240][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.243][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.244][private$selectFields]
biodb.TRACE[2024-05-04 16:02:40.244][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:40.245][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:40.246][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.247][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.247][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.249][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.250][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.250][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.252][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.253][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.253][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.254][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.255][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.256][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.257][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:40.258][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.261][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.264][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.267][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171363645].
biodb.DEBUG[2024-05-04 16:02:40.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:40.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:40.269][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:40.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:40.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:40.275][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:40.276][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:40.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.280][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.283][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.284][private$selectFields]
biodb.TRACE[2024-05-04 16:02:40.285][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:40.286][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:40.286][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.287][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.288][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.290][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.290][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.291][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.293][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.293][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.294][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.295][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.296][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.297][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.298][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:40.299][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.302][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.305][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.308][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171341956].
biodb.DEBUG[2024-05-04 16:02:40.309][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:40.309][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:40.328][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:40.329][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:40.330][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:40.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:40.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:40.335][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:40.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:40.342][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:40.344][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:02:40.345][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-05-04 16:02:40.346][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:02:40.347][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-05-04 16:02:40.355][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:40.357][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:40.357][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:40.358][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:40.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:40.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:40.364][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:40.365][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:40.366][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.369][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.372][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.373][private$selectFields]
biodb.TRACE[2024-05-04 16:02:40.374][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:40.374][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:40.375][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.376][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.377][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.378][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.379][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.380][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.381][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.382][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.383][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.384][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.384][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.386][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.386][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:40.387][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.390][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.393][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.397][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171364948].
biodb.DEBUG[2024-05-04 16:02:40.398][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:40.398][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:40.399][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:40.404][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:40.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:40.405][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:40.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:40.406][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.410][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.413][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.413][private$selectFields]
biodb.TRACE[2024-05-04 16:02:40.414][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:40.415][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:40.415][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.416][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.417][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.418][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.419][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.420][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.421][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.422][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.423][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.424][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.425][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.426][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.427][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:40.428][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.431][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.434][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.437][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171334113].
biodb.DEBUG[2024-05-04 16:02:40.438][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:40.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:40.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:40.444][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:40.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:40.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:40.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:40.447][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.453][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.454][private$selectFields]
biodb.TRACE[2024-05-04 16:02:40.454][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:40.455][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:40.456][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.456][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.457][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.459][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.459][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.460][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.462][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.462][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.463][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.464][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.465][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.466][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.467][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:40.468][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.471][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.474][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.477][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171326497].
biodb.DEBUG[2024-05-04 16:02:40.478][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:40.478][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:40.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:40.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:40.481][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:40.486][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:40.487][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:40.487][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:40.488][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:40.493][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:40.496][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:02:40.497][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-05-04 16:02:40.498][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:02:40.499][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-05-04 16:02:40.500][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:40.502][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:40.502][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:40.503][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:40.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:40.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:40.509][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:40.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:40.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.514][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.517][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.518][private$selectFields]
biodb.TRACE[2024-05-04 16:02:40.518][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:40.519][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:40.520][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.520][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.521][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.523][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.523][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.524][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.526][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.527][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.527][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.528][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.529][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.531][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.531][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:40.532][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.535][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.538][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.542][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171341956].
biodb.DEBUG[2024-05-04 16:02:40.543][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:40.544][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:40.544][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:40.549][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:40.550][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:40.551][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:40.551][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:40.552][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.556][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.559][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.560][private$selectFields]
biodb.TRACE[2024-05-04 16:02:40.560][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:40.561][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:40.562][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.563][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.564][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.565][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.566][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.567][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.568][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.569][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.570][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.571][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.571][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.573][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.574][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:40.574][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.578][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.581][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.584][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171316324].
biodb.DEBUG[2024-05-04 16:02:40.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:40.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:40.586][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:40.591][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:40.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:40.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:40.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:40.594][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.597][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.600][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.601][private$selectFields]
biodb.TRACE[2024-05-04 16:02:40.602][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:40.603][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:40.604][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.604][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.605][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.607][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.608][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.608][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.610][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.611][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.612][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:40.613][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.613][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.615][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.616][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:40.617][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.626][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.630][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:40.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:40.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:40.634][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171316323].
biodb.DEBUG[2024-05-04 16:02:40.635][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:40.636][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:40.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:40.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:40.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:40.661][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:40.662][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:40.663][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:40.664][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:40.669][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:40.672][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:40.672][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:40.674][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-05-04 16:02:40.749][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-04 16:02:40.750][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-04 16:02:40.751][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-04 16:02:40.752][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-05-04 16:02:40.843][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:02:40.845][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content"
biodb.TRACE[2024-05-04 16:02:40.848][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.request"
biodb.DEBUG[2024-05-04 16:02:40.850][private$loadEntries] Creating entries from ids [1]: "171364128".
biodb.DEBUG[2024-05-04 16:02:40.851][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-04 16:02:40.852][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171364128".
biodb.TRACE[2024-05-04 16:02:40.853][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-04 16:02:40.854][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-04 16:02:40.855][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-04 16:02:40.856][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-04 16:02:40.856][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-04 16:02:40.857][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-04 16:02:40.858][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-05-04 16:02:40.859][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171364128/XML".
biodb.DEBUG[2024-05-04 16:02:40.861][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:40.862][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:40.863][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171364128/XML".
biodb.TRACE[2024-05-04 16:02:40.988][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171364128/XML).
biodb.TRACE[2024-05-04 16:02:41.149][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171364128.xml"
biodb.DEBUG[2024-05-04 16:02:41.151][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-04 16:02:41.152][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-05-04 16:02:41.153][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-05-04 16:02:41.155][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:41.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:41.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:41.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:41.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:41.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:41.163][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:41.165][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:41.166][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:41.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.168][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:41.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:41.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.172][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:41.173][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:41.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.175][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:41.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:41.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.179][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:41.180][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:41.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.181][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:41.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:41.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.186][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:41.187][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:41.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.189][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.190][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:41.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:41.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.193][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:41.194][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:41.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.195][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.196][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:41.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:41.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.200][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:41.200][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:41.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.202][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:41.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:41.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.206][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:41.207][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:41.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.209][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.210][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:41.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:41.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.213][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:41.214][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:41.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.215][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.216][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:41.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:41.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.219][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:41.220][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:41.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.222][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.223][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:41.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:41.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.226][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:41.227][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:41.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.228][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:41.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:41.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.232][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:41.233][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:41.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.235][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.236][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:41.236][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:41.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.238][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:41.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:41.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.242][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:41.243][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:41.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.245][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.246][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:41.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:41.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.249][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:41.250][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:41.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.252][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.253][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:41.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:41.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.256][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-04 16:02:41.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:41.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:41.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:41.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.264][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:41.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:41.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.267][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-04 16:02:41.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:41.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:41.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:41.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:41.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:41.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.277][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-04 16:02:41.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:41.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:41.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:41.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:41.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:41.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.287][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-04 16:02:41.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:41.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.290][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:41.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:41.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:41.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:41.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.297][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-04 16:02:41.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:41.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:41.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:41.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:41.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:41.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.307][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:41.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:41.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.310][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.313][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:41.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:41.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.320][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:41.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:41.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.326][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:41.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:41.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:41.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:41.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:41.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:41.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.336][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:41.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:41.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:41.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:41.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:41.343][self$createEntryFromContent] Accession numbers: 171364128.
biodb.DEBUG[2024-05-04 16:02:41.343][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:41.345][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:41.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:41.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:41.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:41.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:41.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:41.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:41.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.369][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.372][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:41.372][private$selectFields]
biodb.TRACE[2024-05-04 16:02:41.373][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:41.374][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:41.375][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:41.376][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.377][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.378][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.379][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.380][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.382][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.382][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:41.383][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:41.384][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.385][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.386][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.387][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:41.388][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.391][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.395][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.398][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171364948].
biodb.DEBUG[2024-05-04 16:02:41.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:41.400][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:41.401][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:41.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:41.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:41.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:41.408][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:41.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.412][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.415][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:41.416][private$selectFields]
biodb.TRACE[2024-05-04 16:02:41.417][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:41.417][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:41.418][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:41.419][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.420][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.421][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.422][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.423][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.424][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.425][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:41.426][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:41.426][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.427][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.429][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.429][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:41.430][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.434][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.437][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.440][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171364128].
biodb.DEBUG[2024-05-04 16:02:41.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:41.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:41.442][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:41.447][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:41.448][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:41.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:41.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:41.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.456][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:41.457][private$selectFields]
biodb.TRACE[2024-05-04 16:02:41.458][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:41.459][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:41.459][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:41.460][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.461][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.463][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.464][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.464][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.466][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.467][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:41.468][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:41.468][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.469][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.471][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.472][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:41.472][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.476][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.479][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:41.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:41.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:41.482][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171338202].
biodb.DEBUG[2024-05-04 16:02:41.483][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:41.484][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:41.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:41.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:41.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:41.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:41.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:41.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:41.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:41.500][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:41.503][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:41.503][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:41.505][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-05-04 16:02:41.581][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-04 16:02:41.581][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-04 16:02:41.583][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-04 16:02:41.584][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-05-04 16:02:41.685][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:02:41.687][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content"
biodb.TRACE[2024-05-04 16:02:41.690][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.request"
biodb.DEBUG[2024-05-04 16:02:41.692][private$loadEntries] Creating entries from ids [3]: "171364838, 171363876, 74324883".
biodb.DEBUG[2024-05-04 16:02:41.692][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-05-04 16:02:41.694][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171364838, 171363876, 74324883".
biodb.TRACE[2024-05-04 16:02:41.695][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-05-04 16:02:41.696][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-04 16:02:41.696][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-04 16:02:41.697][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-04 16:02:41.698][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-04 16:02:41.699][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-04 16:02:41.700][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-05-04 16:02:41.701][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171364838,171363876,74324883/XML".
biodb.DEBUG[2024-05-04 16:02:41.703][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:41.704][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:41.705][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171364838,171363876,74324883/XML".
biodb.TRACE[2024-05-04 16:02:41.871][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171364838,171363876,74324883/XML).
biodb.TRACE[2024-05-04 16:02:42.132][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171364838.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171363876.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/74324883.xml"
biodb.DEBUG[2024-05-04 16:02:42.134][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-04 16:02:42.135][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-05-04 16:02:42.136][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-05-04 16:02:42.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:42.138][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:42.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:42.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:42.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:42.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:42.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:42.148][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:42.149][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:42.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.150][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:42.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:42.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.155][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:42.155][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:42.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.157][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.158][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:42.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:42.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.161][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:42.162][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:42.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.163][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.164][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:42.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:42.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.167][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:42.169][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:42.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.170][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:42.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:42.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.174][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:42.175][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:42.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.177][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.178][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:42.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:42.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.181][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:42.182][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:42.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.183][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.184][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:42.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:42.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.188][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:42.188][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:42.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.190][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.191][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:42.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:42.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.195][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:42.195][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:42.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.197][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.198][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:42.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:42.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.201][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:42.202][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:42.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.203][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.205][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:42.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:42.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.208][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:42.208][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:42.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.210][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.211][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:42.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:42.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.214][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:42.215][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:42.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.216][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.217][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:42.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:42.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.220][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:42.221][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:42.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.223][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.224][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:42.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:42.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.227][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:42.228][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:42.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.230][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.231][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:42.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:42.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.245][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:42.246][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:42.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.247][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.249][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:42.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:42.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.252][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-04 16:02:42.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:42.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.255][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:42.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:42.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.258][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:42.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:42.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.261][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-04 16:02:42.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:42.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.264][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:42.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:42.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.268][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:42.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:42.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.271][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-04 16:02:42.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:42.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:42.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:42.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.278][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:42.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:42.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.281][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-04 16:02:42.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:42.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:42.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:42.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.287][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:42.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:42.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.290][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-04 16:02:42.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:42.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:42.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:42.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:42.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:42.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.300][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:42.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:42.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.303][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.306][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.309][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:42.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:42.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.313][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:42.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:42.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:42.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:42.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:42.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:42.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:42.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:42.327][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:42.327][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:42.332][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:42.333][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:42.333][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:42.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:42.337][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:42.338][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:42.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.339][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:42.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:42.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.343][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:42.344][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:42.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.346][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.347][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:42.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:42.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.350][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:42.351][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:42.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.352][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:42.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:42.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.356][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:42.357][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:42.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.359][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:42.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:42.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.363][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:42.364][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:42.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.365][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.366][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:42.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:42.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.370][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:42.370][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:42.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.372][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:42.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:42.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.376][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:42.377][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:42.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.379][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.380][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:42.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:42.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.383][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:42.384][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:42.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.385][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.386][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:42.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:42.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.389][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:42.390][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:42.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.391][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.392][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:42.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:42.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.396][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:42.397][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:42.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.398][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.399][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:42.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:42.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.402][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:42.403][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:42.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.405][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.406][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:42.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:42.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.409][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:42.410][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:42.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.411][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.412][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:42.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:42.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.415][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:42.416][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:42.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.418][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.419][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:42.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:42.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.422][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:42.423][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:42.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.424][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.425][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:42.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:42.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.428][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-04 16:02:42.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:42.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.431][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:42.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:42.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:42.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:42.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.438][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-04 16:02:42.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:42.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.441][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:42.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:42.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:42.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:42.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.450][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-04 16:02:42.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:42.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:42.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:42.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:42.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:42.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.459][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-04 16:02:42.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:42.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.463][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:42.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:42.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:42.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:42.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.469][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-04 16:02:42.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:42.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.472][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:42.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:42.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.475][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:42.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:42.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.478][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:42.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:42.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.481][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.484][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:42.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:42.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.491][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:42.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:42.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:42.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:42.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:42.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:42.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:42.503][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:42.504][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:42.505][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:42.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:42.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:42.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:42.524][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:42.527][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:42.528][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:42.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.529][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:42.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:42.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.533][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:42.534][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:42.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.535][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:42.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:42.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.540][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:42.541][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:42.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.542][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:42.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:42.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.546][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:42.547][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:42.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.549][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.550][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:42.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:42.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.553][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:42.554][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:42.554][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.555][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:42.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:42.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.559][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:42.560][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:42.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.562][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.563][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:42.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:42.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.566][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:42.567][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:42.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.569][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.570][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:42.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:42.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.573][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:42.574][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:42.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.576][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.577][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:42.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:42.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.580][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:42.581][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:42.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.582][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.583][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:42.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:42.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.587][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:42.587][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:42.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.589][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:42.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:42.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.593][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:42.594][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:42.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.596][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.597][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:42.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:42.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.600][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:42.601][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:42.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.602][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:42.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:42.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.607][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:42.608][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:42.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.609][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.610][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:42.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:42.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.613][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:42.614][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:42.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.616][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.617][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:42.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:42.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.620][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-04 16:02:42.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:42.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:42.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:42.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:42.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:42.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.629][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-04 16:02:42.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:42.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:42.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:42.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:42.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:42.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.638][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-04 16:02:42.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:42.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.641][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:42.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:42.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.645][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:42.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:42.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.648][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-04 16:02:42.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:42.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.651][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:42.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:42.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.654][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:42.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:42.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.658][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-04 16:02:42.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:42.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:42.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:42.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.664][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:42.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:42.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.667][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:42.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:42.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.670][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.674][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:42.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:42.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.680][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:42.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:42.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:42.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:42.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:42.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:42.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.693][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:42.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:42.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:42.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:42.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.699][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:42.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:42.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.702][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:42.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:42.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:42.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:42.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:42.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:42.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:42.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:42.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:42.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:42.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:42.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:42.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:42.721][self$createEntryFromContent] Accession numbers: 171364838, 171363876, 74324883.
biodb.DEBUG[2024-05-04 16:02:42.722][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:42.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:42.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:42.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:42.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:42.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:42.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:42.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:42.732][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.735][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.738][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:42.739][private$selectFields]
biodb.TRACE[2024-05-04 16:02:42.740][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:42.741][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:42.741][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:42.742][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.743][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.745][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.745][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.746][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.748][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.749][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:42.749][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:42.750][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.751][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.752][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.753][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:42.754][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.757][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.760][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.763][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171364838].
biodb.DEBUG[2024-05-04 16:02:42.764][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:42.765][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:42.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:42.770][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:42.771][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:42.771][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:42.772][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:42.773][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.776][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.779][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:42.780][private$selectFields]
biodb.TRACE[2024-05-04 16:02:42.781][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:42.781][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:42.782][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:42.783][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.790][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.792][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.793][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.794][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.796][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.797][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:42.797][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:42.798][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.799][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.800][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.801][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:42.802][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.805][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.808][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.812][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171363876].
biodb.DEBUG[2024-05-04 16:02:42.812][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:42.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:42.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:42.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:42.819][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:42.820][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:42.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:42.822][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.825][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.828][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:42.829][private$selectFields]
biodb.TRACE[2024-05-04 16:02:42.830][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:42.830][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:42.831][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:42.832][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.833][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.834][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.835][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.836][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.837][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.838][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:42.839][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:42.840][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.840][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.842][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.843][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:42.844][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.847][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.850][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.854][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [74324883].
biodb.DEBUG[2024-05-04 16:02:42.855][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:42.855][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:42.875][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:42.875][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:42.876][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:42.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:42.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:42.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:42.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:42.888][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:42.890][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:02:42.892][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9701d2e1a6b096cdfd56943877648611".
biodb.TRACE[2024-05-04 16:02:42.892][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:02:42.894][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content".
biodb.DEBUG[2024-05-04 16:02:42.895][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:42.896][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:42.897][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:42.897][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:42.902][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:42.903][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:42.903][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:42.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:42.905][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.908][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.911][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:42.912][private$selectFields]
biodb.TRACE[2024-05-04 16:02:42.912][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:42.913][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:42.914][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:42.915][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.915][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.917][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.918][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.919][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.920][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.921][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:42.921][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:42.922][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.923][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.924][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.925][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:42.926][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.929][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.932][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.935][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171364948].
biodb.DEBUG[2024-05-04 16:02:42.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:42.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:42.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:42.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:42.943][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:42.944][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:42.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:42.945][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.948][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.951][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:42.952][private$selectFields]
biodb.TRACE[2024-05-04 16:02:42.953][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:42.954][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:42.954][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:42.955][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.956][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.957][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.958][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.959][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.961][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.961][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:42.962][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:42.963][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.964][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.965][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.966][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:42.967][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.970][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.973][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.976][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171358728].
biodb.DEBUG[2024-05-04 16:02:42.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:42.978][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:42.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:42.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:42.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:42.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:42.985][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:42.986][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.990][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:42.993][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:42.994][private$selectFields]
biodb.TRACE[2024-05-04 16:02:42.995][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:42.995][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:42.996][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:42.997][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.998][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:42.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:42.999][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.000][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.001][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.002][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.003][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.004][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.004][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.005][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.007][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.008][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:43.008][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.011][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.014][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.018][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171355522].
biodb.DEBUG[2024-05-04 16:02:43.019][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:43.020][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:43.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:43.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:43.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:43.027][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:43.028][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:43.029][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:43.030][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:43.035][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:43.038][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:02:43.039][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ce15c6e17e9ed97ba06e918ccdf7a5ba".
biodb.TRACE[2024-05-04 16:02:43.040][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:02:43.041][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content".
biodb.DEBUG[2024-05-04 16:02:43.042][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:43.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:43.044][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:43.045][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:43.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:43.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:43.050][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:43.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:43.052][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.055][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.058][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.059][private$selectFields]
biodb.TRACE[2024-05-04 16:02:43.060][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:43.061][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:43.061][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.062][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.069][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.071][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.072][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.073][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.075][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.076][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.077][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.077][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.078][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.080][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.080][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:43.081][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.084][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.087][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.090][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171364517].
biodb.DEBUG[2024-05-04 16:02:43.091][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:43.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:43.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:43.097][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:43.098][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:43.099][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:43.099][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:43.100][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.104][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.107][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.107][private$selectFields]
biodb.TRACE[2024-05-04 16:02:43.108][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:43.109][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:43.110][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.110][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.111][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.113][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.114][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.114][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.116][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.117][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.117][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.118][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.119][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.120][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.121][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:43.122][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.125][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.128][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.131][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171363645].
biodb.DEBUG[2024-05-04 16:02:43.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:43.133][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:43.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:43.138][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:43.139][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:43.140][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:43.140][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:43.141][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.144][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.148][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.148][private$selectFields]
biodb.TRACE[2024-05-04 16:02:43.149][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:43.150][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:43.151][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.151][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.152][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.154][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.154][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.155][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.157][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.157][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.158][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.159][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.160][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.161][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.162][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:43.163][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.166][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.169][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.172][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171341956].
biodb.DEBUG[2024-05-04 16:02:43.173][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:43.174][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:43.192][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:43.193][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:43.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:43.198][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:43.199][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:43.200][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:43.201][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:43.206][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:43.208][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:02:43.209][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-05-04 16:02:43.210][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:02:43.211][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-05-04 16:02:43.213][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:43.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:43.214][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:43.215][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:43.220][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:43.220][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:43.221][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:43.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:43.223][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.226][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.228][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.229][private$selectFields]
biodb.TRACE[2024-05-04 16:02:43.230][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:43.231][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:43.231][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.232][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.233][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.234][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.235][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.236][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.237][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.238][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.239][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.239][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.240][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.242][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.242][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:43.243][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.246][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.249][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.252][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171364948].
biodb.DEBUG[2024-05-04 16:02:43.253][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:43.254][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:43.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:43.259][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:43.260][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:43.261][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:43.261][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:43.262][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.265][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.269][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.269][private$selectFields]
biodb.TRACE[2024-05-04 16:02:43.270][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:43.271][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:43.272][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.272][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.273][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.275][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.275][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.276][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.277][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.278][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.279][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.280][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.281][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.282][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.283][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:43.283][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.286][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.289][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.293][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171334113].
biodb.DEBUG[2024-05-04 16:02:43.294][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:43.294][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:43.295][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:43.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:43.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:43.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:43.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:43.302][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.305][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.309][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.309][private$selectFields]
biodb.TRACE[2024-05-04 16:02:43.310][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:43.311][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:43.312][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.312][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.313][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.315][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.315][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.316][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.318][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.318][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.319][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.320][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.321][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.322][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.323][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:43.324][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.327][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.330][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.334][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171326497].
biodb.DEBUG[2024-05-04 16:02:43.335][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:43.342][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:43.344][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:43.345][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:43.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:43.351][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:43.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:43.352][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:43.353][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:43.358][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:43.361][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:02:43.362][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-05-04 16:02:43.363][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:02:43.364][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-05-04 16:02:43.366][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:43.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:43.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:43.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:43.373][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:43.374][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:43.375][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:43.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:43.377][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.380][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.383][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.384][private$selectFields]
biodb.TRACE[2024-05-04 16:02:43.385][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:43.386][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:43.386][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.387][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.388][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.390][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.390][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.391][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.393][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.394][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.395][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.395][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.396][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.398][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.399][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:43.399][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.402][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.406][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.409][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171341956].
biodb.DEBUG[2024-05-04 16:02:43.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:43.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:43.411][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:43.416][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:43.417][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:43.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:43.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:43.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.422][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.426][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.427][private$selectFields]
biodb.TRACE[2024-05-04 16:02:43.427][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:43.428][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:43.429][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.430][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.431][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.432][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.433][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.434][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.435][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.436][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.437][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.438][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.439][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.440][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.441][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:43.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.449][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.452][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171316324].
biodb.DEBUG[2024-05-04 16:02:43.453][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:43.454][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:43.454][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:43.459][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:43.460][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:43.460][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:43.461][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:43.462][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.465][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.469][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.469][private$selectFields]
biodb.TRACE[2024-05-04 16:02:43.470][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:43.471][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:43.472][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.473][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.473][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.475][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.476][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.477][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.478][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.479][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.480][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.481][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.481][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.483][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.484][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:43.485][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.488][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.491][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.495][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171316323].
biodb.DEBUG[2024-05-04 16:02:43.496][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:43.496][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:43.515][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:43.516][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:43.517][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:43.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:43.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:43.523][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:43.523][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:43.529][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:43.531][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:02:43.532][cch$loadFileContent] Trying to load 1 files from cache: [1]: "897c6c1cf86bb233833a030ee6928dbf".
biodb.TRACE[2024-05-04 16:02:43.533][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:02:43.534][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content".
biodb.DEBUG[2024-05-04 16:02:43.536][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:43.537][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:43.538][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:43.538][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:43.543][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:43.544][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:43.545][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:43.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:43.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.550][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.553][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.554][private$selectFields]
biodb.TRACE[2024-05-04 16:02:43.554][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:43.555][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:43.556][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.556][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.557][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.559][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.559][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.560][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.562][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.563][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.563][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.564][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.565][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.567][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.567][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:43.568][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.571][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.575][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.578][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171364948].
biodb.DEBUG[2024-05-04 16:02:43.579][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:43.580][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:43.580][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:43.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:43.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:43.586][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:43.587][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:43.588][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.591][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.594][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.595][private$selectFields]
biodb.TRACE[2024-05-04 16:02:43.596][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:43.597][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:43.597][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.598][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.599][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.601][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.601][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.602][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.604][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.604][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.605][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.606][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.607][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.608][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.609][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:43.610][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.613][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.616][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.620][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171364128].
biodb.DEBUG[2024-05-04 16:02:43.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:43.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:43.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:43.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:43.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:43.636][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:43.636][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:43.637][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.641][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.644][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.645][private$selectFields]
biodb.TRACE[2024-05-04 16:02:43.646][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:43.646][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:43.647][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.648][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.649][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.650][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.651][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.652][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.654][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.654][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.655][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.656][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.657][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.658][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.659][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:43.660][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.666][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.670][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171338202].
biodb.DEBUG[2024-05-04 16:02:43.670][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:43.671][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:43.673][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:43.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:43.674][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:43.679][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:43.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:43.680][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:43.681][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:43.686][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:43.688][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:02:43.689][cch$loadFileContent] Trying to load 1 files from cache: [1]: "56a93d3214bbb5417ad13002a40518e8".
biodb.TRACE[2024-05-04 16:02:43.690][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:02:43.691][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content".
biodb.DEBUG[2024-05-04 16:02:43.693][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:43.694][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:43.695][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:43.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:43.700][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:43.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:43.701][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:43.702][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:43.703][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.706][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.709][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.710][private$selectFields]
biodb.TRACE[2024-05-04 16:02:43.711][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:43.712][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:43.712][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.713][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.714][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.715][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.716][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.717][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.718][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.719][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.720][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.721][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.722][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.723][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.724][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:43.725][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.728][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.730][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.734][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171364838].
biodb.DEBUG[2024-05-04 16:02:43.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:43.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:43.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:43.741][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:43.742][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:43.742][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:43.743][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:43.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.747][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.750][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.751][private$selectFields]
biodb.TRACE[2024-05-04 16:02:43.752][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:43.752][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:43.753][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.754][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.755][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.756][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.757][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.757][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.759][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.760][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.760][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.761][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.762][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.763][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.764][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:43.765][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.768][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.771][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.774][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171363876].
biodb.DEBUG[2024-05-04 16:02:43.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:43.776][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:43.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:43.781][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:43.782][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:43.782][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:43.783][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:43.784][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.787][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.790][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.791][private$selectFields]
biodb.TRACE[2024-05-04 16:02:43.791][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:43.792][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:43.793][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.794][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.795][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.796][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.797][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.798][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.800][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.800][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.801][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:43.802][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.803][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.804][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.805][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:43.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.809][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.812][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:43.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.815][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [74324883].
biodb.DEBUG[2024-05-04 16:02:43.816][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:43.817][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-05-04 16:02:43.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:43.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:43.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.838][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:43.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:43.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:43.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:43.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:43.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:43.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:43.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:43.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:43.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:43.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:43.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:43.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:43.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:43.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:43.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:43.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:43.862][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:43.863][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:43.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:43.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:43.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:43.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:43.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:43.876][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:43.878][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:43.879][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:43.880][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-05-04 16:02:43.955][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-04 16:02:43.956][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-04 16:02:43.957][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-04 16:02:43.959][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-05-04 16:02:44.054][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:02:44.056][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content"
biodb.TRACE[2024-05-04 16:02:44.059][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.request"
biodb.DEBUG[2024-05-04 16:02:44.061][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:44.062][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:44.063][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:44.064][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:44.068][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:44.069][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:44.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:44.078][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:44.079][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.084][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.087][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:44.088][private$selectFields]
biodb.TRACE[2024-05-04 16:02:44.089][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:44.089][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:44.090][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:44.091][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.092][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.093][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.094][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.095][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.097][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.097][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:44.098][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:44.099][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.100][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.101][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.102][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:44.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.107][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.110][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.114][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171364948].
biodb.DEBUG[2024-05-04 16:02:44.115][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:44.115][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:44.116][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:44.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:44.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:44.122][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:44.123][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:44.124][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.131][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:44.131][private$selectFields]
biodb.TRACE[2024-05-04 16:02:44.132][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:44.133][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:44.134][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:44.135][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.135][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.137][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.138][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.138][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.140][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.141][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:44.142][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:44.142][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.143][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.145][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.145][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:44.146][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.149][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.152][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.156][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171358728].
biodb.DEBUG[2024-05-04 16:02:44.157][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:44.157][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:44.158][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:44.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:44.163][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:44.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:44.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:44.166][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.169][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.172][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:44.173][private$selectFields]
biodb.TRACE[2024-05-04 16:02:44.174][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:44.174][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:44.175][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:44.176][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.177][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.178][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.179][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.180][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.181][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.182][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:44.183][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:44.183][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.184][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.186][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.186][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:44.187][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.190][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.193][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.197][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171355522].
biodb.DEBUG[2024-05-04 16:02:44.198][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:44.199][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:44.200][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:44.201][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:44.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:44.206][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:44.207][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:44.207][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:44.208][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:44.214][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:44.217][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:44.217][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:44.219][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-05-04 16:02:44.295][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-04 16:02:44.295][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-04 16:02:44.297][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-04 16:02:44.298][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-05-04 16:02:44.392][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:02:44.393][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content"
biodb.TRACE[2024-05-04 16:02:44.397][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.request"
biodb.DEBUG[2024-05-04 16:02:44.399][private$loadEntries] Creating entries from ids [2]: "12550364, 171363633".
biodb.DEBUG[2024-05-04 16:02:44.399][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-05-04 16:02:44.401][cch$loadFileContent] Trying to load 2 files from cache: [2]: "12550364, 171363633".
biodb.TRACE[2024-05-04 16:02:44.402][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-05-04 16:02:44.402][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-04 16:02:44.403][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-05-04 16:02:44.404][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-04 16:02:44.405][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-04 16:02:44.406][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-05-04 16:02:44.406][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-05-04 16:02:44.408][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/12550364,171363633/XML".
biodb.DEBUG[2024-05-04 16:02:44.410][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:44.411][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:44.412][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/12550364,171363633/XML".
biodb.TRACE[2024-05-04 16:02:44.567][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/12550364,171363633/XML).
biodb.TRACE[2024-05-04 16:02:44.743][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/12550364.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171363633.xml"
biodb.DEBUG[2024-05-04 16:02:44.745][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-04 16:02:44.746][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-05-04 16:02:44.747][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-05-04 16:02:44.748][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:44.749][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:44.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:44.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:44.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:44.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:44.757][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:44.759][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:44.760][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:44.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.762][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:44.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:44.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.766][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:44.767][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:44.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.768][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.769][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:44.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:44.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.773][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:44.773][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:44.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.775][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.776][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:44.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:44.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.779][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:44.780][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:44.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.781][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:44.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:44.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.786][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:44.787][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:44.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.788][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:44.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:44.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.792][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:44.793][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:44.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.795][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.796][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:44.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:44.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.799][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:44.800][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:44.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.801][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.802][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:44.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:44.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.806][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:44.807][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:44.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.808][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.809][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:44.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:44.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.813][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:44.814][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:44.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.815][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.816][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:44.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:44.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.819][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:44.820][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:44.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.821][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.822][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:44.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:44.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.825][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:44.826][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:44.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.828][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.829][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:44.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:44.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.832][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:44.833][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:44.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.834][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.835][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:44.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:44.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.839][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:44.839][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:44.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.841][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.842][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:44.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:44.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.855][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:44.856][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:44.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.858][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.859][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:44.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:44.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.863][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-04 16:02:44.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:44.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:44.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:44.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.869][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:44.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:44.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.872][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-04 16:02:44.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:44.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.876][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:44.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:44.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.879][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:44.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:44.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.882][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-04 16:02:44.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:44.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.885][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:44.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:44.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:44.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:44.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.892][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-04 16:02:44.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:44.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:44.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:44.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:44.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:44.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.901][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-04 16:02:44.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:44.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.905][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:44.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:44.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:44.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:44.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.911][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:44.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:44.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.914][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.917][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:44.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:44.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:44.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.927][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:44.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:44.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:44.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:44.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:44.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:44.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:44.937][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:44.937][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:44.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:44.943][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:44.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:44.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:44.945][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:44.948][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:44.949][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:44.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.950][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.951][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:44.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:44.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.954][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:44.955][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:44.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.957][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:44.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:44.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.961][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:44.962][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:44.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.964][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.965][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:44.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:44.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.968][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:44.969][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:44.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.971][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:44.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:44.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.975][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:44.976][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:44.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.977][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:44.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:44.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.982][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:44.983][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:44.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.984][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:44.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:44.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.989][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:44.989][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:44.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.991][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.992][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:44.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:44.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.995][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:44.996][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:44.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:44.998][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:44.999][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:45.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:45.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.002][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:45.003][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:45.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.005][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:45.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:45.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.009][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:45.010][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:45.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.011][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:45.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:45.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.016][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:45.016][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:45.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.018][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.019][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:45.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:45.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.022][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:45.023][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:45.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.025][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.026][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-05-04 16:02:45.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:45.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.029][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:45.030][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:45.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.031][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.032][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:45.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:45.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.035][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:45.036][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:45.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.038][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.039][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:45.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:45.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.042][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-05-04 16:02:45.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:45.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.046][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:45.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:45.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:45.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:45.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.052][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-05-04 16:02:45.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:45.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.056][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:45.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:45.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.059][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:45.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:45.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.062][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-05-04 16:02:45.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:45.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.065][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:45.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:45.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.068][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:45.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:45.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.072][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-05-04 16:02:45.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:45.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:45.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:45.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:45.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:45.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.081][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-05-04 16:02:45.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:45.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.085][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:45.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:45.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.088][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:45.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:45.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.091][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:45.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:45.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.094][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:45.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:45.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.104][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:45.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:45.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.111][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:45.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:45.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.114][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:45.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:45.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:45.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:45.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:45.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:45.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:45.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:45.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:45.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:45.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:45.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:45.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:45.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:45.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:45.144][self$createEntryFromContent] Accession numbers: 12550364, 171363633.
biodb.DEBUG[2024-05-04 16:02:45.145][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:45.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:45.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:45.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:45.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:45.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:45.155][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:45.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:45.156][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.159][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.163][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.163][private$selectFields]
biodb.TRACE[2024-05-04 16:02:45.164][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:45.165][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:45.166][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.166][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.167][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.169][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.170][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.170][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.172][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.173][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.174][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.174][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.175][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.177][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.178][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:45.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.182][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.185][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.189][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [12550364].
biodb.DEBUG[2024-05-04 16:02:45.190][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:45.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:45.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:45.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:45.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:45.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:45.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:45.199][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.202][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.205][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.206][private$selectFields]
biodb.TRACE[2024-05-04 16:02:45.207][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:45.207][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:45.208][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.209][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.210][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.211][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.212][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.213][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.215][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.215][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.216][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.217][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.218][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.219][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.220][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:45.221][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.224][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.227][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.230][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171363645].
biodb.DEBUG[2024-05-04 16:02:45.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:45.231][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:45.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:45.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:45.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:45.238][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:45.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:45.240][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.242][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.246][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.246][private$selectFields]
biodb.TRACE[2024-05-04 16:02:45.247][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:45.248][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:45.249][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.249][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.250][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.252][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.252][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.253][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.255][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.255][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.256][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.257][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.258][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.259][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.260][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:45.261][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.264][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.267][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.271][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171363633].
biodb.DEBUG[2024-05-04 16:02:45.271][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:45.272][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:45.291][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:45.292][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:45.292][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:45.297][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:45.297][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:45.298][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:45.299][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:45.304][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:45.307][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:02:45.308][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-05-04 16:02:45.308][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:02:45.310][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-05-04 16:02:45.311][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:45.312][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:45.313][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:45.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:45.318][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:45.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:45.319][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:45.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:45.321][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.324][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.327][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.328][private$selectFields]
biodb.TRACE[2024-05-04 16:02:45.328][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:45.329][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:45.330][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.331][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.331][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.333][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.334][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.334][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.336][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.337][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.337][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.338][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.339][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.340][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.341][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:45.342][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.344][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.347][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.350][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171364948].
biodb.DEBUG[2024-05-04 16:02:45.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:45.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:45.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:45.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:45.358][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:45.358][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:45.359][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:45.360][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.363][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.366][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.367][private$selectFields]
biodb.TRACE[2024-05-04 16:02:45.367][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:45.368][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:45.369][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.369][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.370][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.372][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.372][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.373][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.375][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.375][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.376][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.377][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.378][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.379][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.380][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:45.380][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.383][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.386][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.391][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171338202].
biodb.DEBUG[2024-05-04 16:02:45.392][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:45.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:45.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:45.403][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:45.404][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:45.405][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:45.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:45.408][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.411][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.415][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.415][private$selectFields]
biodb.TRACE[2024-05-04 16:02:45.416][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:45.417][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:45.418][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.418][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.419][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.420][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.421][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.422][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.424][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.424][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.425][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.426][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.427][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.428][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.429][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:45.430][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.433][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.436][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.440][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171326566].
biodb.DEBUG[2024-05-04 16:02:45.441][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:45.441][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:45.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:45.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:45.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:45.449][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:45.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:45.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:45.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:45.456][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:45.459][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:02:45.460][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-05-04 16:02:45.461][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:02:45.462][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-05-04 16:02:45.463][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:45.464][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:45.465][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:45.466][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:45.470][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:45.471][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:45.472][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:45.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:45.473][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.476][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.479][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.480][private$selectFields]
biodb.TRACE[2024-05-04 16:02:45.481][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:45.482][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:45.482][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.483][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.484][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.485][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.486][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.487][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.489][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.489][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.490][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.491][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.492][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.493][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.494][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:45.495][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.498][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.501][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.504][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171316040].
biodb.DEBUG[2024-05-04 16:02:45.505][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:45.505][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:45.506][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:45.511][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:45.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:45.512][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:45.513][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:45.514][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.517][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.520][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.521][private$selectFields]
biodb.TRACE[2024-05-04 16:02:45.522][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:45.522][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:45.523][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.524][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.525][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.526][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.527][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.528][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.529][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.530][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.531][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.531][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.532][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.533][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.534][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:45.535][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.538][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.541][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.544][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171260713].
biodb.DEBUG[2024-05-04 16:02:45.545][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:45.546][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:45.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:45.551][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:45.552][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:45.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:45.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:45.554][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.557][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.560][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.560][private$selectFields]
biodb.TRACE[2024-05-04 16:02:45.561][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:45.562][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:45.563][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.563][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.564][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.566][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.566][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.567][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.568][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.569][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.570][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.570][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.571][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.572][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.573][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.574][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:45.575][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.578][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.581][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.584][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171260621].
biodb.DEBUG[2024-05-04 16:02:45.585][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:45.586][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:45.605][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:45.606][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:45.606][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:45.611][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:45.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:45.612][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:45.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:45.618][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:45.621][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:45.621][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:45.623][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-05-04 16:02:45.700][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-04 16:02:45.701][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-04 16:02:45.702][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-04 16:02:45.703][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-05-04 16:02:45.834][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:02:45.835][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content"
biodb.TRACE[2024-05-04 16:02:45.838][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.request"
biodb.DEBUG[2024-05-04 16:02:45.840][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:45.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:45.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:45.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:45.847][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:45.848][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:45.849][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:45.850][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:45.851][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.854][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.857][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.857][private$selectFields]
biodb.TRACE[2024-05-04 16:02:45.858][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:45.859][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:45.859][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.860][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.861][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.862][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.863][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.864][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.865][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.866][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.867][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.868][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.868][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.870][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.871][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:45.871][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.874][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.890][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171364948].
biodb.DEBUG[2024-05-04 16:02:45.891][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:45.891][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:45.892][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:45.897][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:45.897][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:45.898][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:45.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:45.900][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.903][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.906][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.907][private$selectFields]
biodb.TRACE[2024-05-04 16:02:45.907][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:45.908][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:45.909][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.910][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.911][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.912][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.913][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.914][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.915][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.916][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.917][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.917][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.918][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.920][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.920][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:45.921][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.924][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.927][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.931][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171364128].
biodb.DEBUG[2024-05-04 16:02:45.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:45.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:45.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:45.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:45.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:45.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:45.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:45.941][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.944][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.947][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.947][private$selectFields]
biodb.TRACE[2024-05-04 16:02:45.948][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:45.949][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:45.950][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.950][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.951][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.953][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.953][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.954][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.956][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.956][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.957][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:45.958][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.959][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.960][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.961][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:45.962][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.965][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.967][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:45.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:45.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:45.971][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171338202].
biodb.DEBUG[2024-05-04 16:02:45.971][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:45.972][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:45.974][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:45.974][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:45.975][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:45.980][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:45.981][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:45.981][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:45.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:45.987][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:45.990][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:45.991][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:45.992][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-05-04 16:02:46.067][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-05-04 16:02:46.068][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-05-04 16:02:46.070][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-05-04 16:02:46.071][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-05-04 16:02:46.180][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:02:46.182][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content"
biodb.TRACE[2024-05-04 16:02:46.185][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.request"
biodb.DEBUG[2024-05-04 16:02:46.187][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:46.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:46.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:46.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:46.195][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:46.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:46.196][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:46.197][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:46.198][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.201][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.205][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.206][private$selectFields]
biodb.TRACE[2024-05-04 16:02:46.206][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:46.207][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:46.208][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.209][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.209][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.211][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.212][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.213][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.214][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.215][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.216][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.216][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.217][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.219][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.220][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:46.220][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.224][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.227][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.230][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171364838].
biodb.DEBUG[2024-05-04 16:02:46.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:46.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:46.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:46.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:46.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:46.238][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:46.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:46.240][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.243][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.246][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.247][private$selectFields]
biodb.TRACE[2024-05-04 16:02:46.248][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:46.248][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:46.249][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.250][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.251][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.252][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.253][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.254][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.255][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.256][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.257][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.258][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.258][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.260][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.261][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:46.261][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.264][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.268][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.271][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171363876].
biodb.DEBUG[2024-05-04 16:02:46.272][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:46.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:46.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:46.278][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:46.279][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:46.280][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:46.281][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:46.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.285][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.288][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.288][private$selectFields]
biodb.TRACE[2024-05-04 16:02:46.289][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:46.290][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:46.290][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.291][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.292][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.293][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.294][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.295][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.296][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.297][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.298][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.298][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.299][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.301][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.301][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:46.302][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.305][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.308][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.311][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [74324883].
biodb.DEBUG[2024-05-04 16:02:46.312][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:46.313][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:46.331][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:46.332][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:46.333][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:46.345][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:46.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:46.346][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:46.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:46.353][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:46.356][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:02:46.357][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8ad32143f99567438eba281a371befbc".
biodb.TRACE[2024-05-04 16:02:46.358][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:02:46.359][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content".
biodb.DEBUG[2024-05-04 16:02:46.360][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:46.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:46.362][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:46.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:46.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:46.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:46.369][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:46.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:46.371][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.377][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.378][private$selectFields]
biodb.TRACE[2024-05-04 16:02:46.378][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:46.379][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:46.380][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.381][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.381][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.383][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.384][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.384][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.386][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.387][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.388][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.388][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.389][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.391][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.392][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:46.392][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.395][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.398][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.402][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171364948].
biodb.DEBUG[2024-05-04 16:02:46.402][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:46.403][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:46.404][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:46.408][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:46.409][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:46.410][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:46.410][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:46.411][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.415][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.418][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.419][private$selectFields]
biodb.TRACE[2024-05-04 16:02:46.419][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:46.420][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:46.421][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.421][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.422][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.424][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.425][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.425][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.427][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.427][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.428][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.429][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.430][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.431][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.432][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:46.433][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.436][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.439][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.442][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171358728].
biodb.DEBUG[2024-05-04 16:02:46.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:46.443][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:46.444][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:46.449][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:46.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:46.450][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:46.451][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:46.452][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.455][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.458][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.459][private$selectFields]
biodb.TRACE[2024-05-04 16:02:46.459][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:46.460][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:46.461][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.462][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.462][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.464][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.465][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.466][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.467][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.468][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.469][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.469][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.470][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.472][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.472][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:46.473][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.476][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.479][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.483][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171355522].
biodb.DEBUG[2024-05-04 16:02:46.483][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:46.484][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:46.486][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:46.486][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:46.487][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:46.492][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:46.492][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:46.493][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:46.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:46.499][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:46.502][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:02:46.503][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ead2a4c6d4c972bfbf7c3e8a0e8299c8".
biodb.TRACE[2024-05-04 16:02:46.504][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:02:46.505][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content".
biodb.DEBUG[2024-05-04 16:02:46.506][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:46.508][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:46.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:46.509][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:46.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:46.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:46.515][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:46.516][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:46.517][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.520][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.523][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.524][private$selectFields]
biodb.TRACE[2024-05-04 16:02:46.525][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:46.526][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:46.526][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.527][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.528][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.530][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.530][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.531][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.533][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.533][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.534][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.535][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.536][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.537][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.538][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:46.539][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.542][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.549][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [12550364].
biodb.DEBUG[2024-05-04 16:02:46.550][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:46.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:46.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:46.556][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:46.557][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:46.557][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:46.558][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:46.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.565][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.566][private$selectFields]
biodb.TRACE[2024-05-04 16:02:46.567][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:46.568][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:46.568][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.569][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.570][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.572][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.572][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.573][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.575][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.576][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.576][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.577][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.578][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.580][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.580][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:46.581][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.584][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.588][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.591][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171363645].
biodb.DEBUG[2024-05-04 16:02:46.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:46.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:46.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:46.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:46.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:46.600][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:46.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:46.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.605][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.608][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.609][private$selectFields]
biodb.TRACE[2024-05-04 16:02:46.610][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:46.610][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:46.618][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.619][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.620][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.622][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.623][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.624][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.626][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.626][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.627][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.628][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.629][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.630][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.631][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:46.632][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.636][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.639][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.642][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171363633].
biodb.DEBUG[2024-05-04 16:02:46.643][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:46.644][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:46.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:46.664][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:46.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:46.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:46.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:46.671][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:46.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:46.677][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:46.680][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:02:46.681][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-05-04 16:02:46.682][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:02:46.683][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-05-04 16:02:46.684][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:46.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:46.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:46.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:46.691][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:46.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:46.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:46.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:46.694][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.697][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.700][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.701][private$selectFields]
biodb.TRACE[2024-05-04 16:02:46.702][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:46.703][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:46.704][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.704][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.705][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.707][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.707][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.708][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.710][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.710][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.711][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.712][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.713][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.714][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.715][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:46.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.719][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.722][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.725][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171364948].
biodb.DEBUG[2024-05-04 16:02:46.726][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:46.727][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:46.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:46.732][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:46.733][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:46.734][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:46.735][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:46.736][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.739][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.742][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.743][private$selectFields]
biodb.TRACE[2024-05-04 16:02:46.744][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:46.744][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:46.745][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.746][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.747][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.748][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.749][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.750][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.751][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.752][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.753][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.754][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.754][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.756][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.757][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:46.758][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.761][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.764][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.767][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171338202].
biodb.DEBUG[2024-05-04 16:02:46.768][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:46.769][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:46.770][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:46.774][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:46.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:46.776][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:46.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:46.778][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.781][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.784][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.785][private$selectFields]
biodb.TRACE[2024-05-04 16:02:46.786][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:46.786][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:46.787][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.788][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.789][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.790][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.791][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.792][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.794][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.794][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.795][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.796][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.797][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.798][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.799][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:46.800][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.803][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.810][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171326566].
biodb.DEBUG[2024-05-04 16:02:46.810][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:46.811][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:46.813][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:46.814][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:46.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:46.819][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:46.820][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:46.820][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:46.821][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:46.827][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:46.829][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:02:46.830][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-05-04 16:02:46.831][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:02:46.832][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-05-04 16:02:46.834][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:46.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:46.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:46.836][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:46.841][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:46.842][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:46.842][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:46.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:46.844][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.848][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.851][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.852][private$selectFields]
biodb.TRACE[2024-05-04 16:02:46.853][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:46.853][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:46.854][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.855][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.856][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.857][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.858][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.859][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.860][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.861][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.862][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.863][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.864][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.865][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.866][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:46.867][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.870][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.873][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.877][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171316040].
biodb.DEBUG[2024-05-04 16:02:46.878][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:46.879][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:46.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:46.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:46.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:46.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:46.886][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:46.887][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.891][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.894][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.902][private$selectFields]
biodb.TRACE[2024-05-04 16:02:46.903][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:46.904][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:46.905][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.907][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.908][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.910][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.911][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.912][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.913][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.914][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.915][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.916][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.917][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.918][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.919][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:46.920][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.923][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.927][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.931][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171260713].
biodb.DEBUG[2024-05-04 16:02:46.932][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:46.932][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:46.933][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:46.938][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:46.939][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:46.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:46.940][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:46.941][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.944][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.948][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.948][private$selectFields]
biodb.TRACE[2024-05-04 16:02:46.949][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:46.950][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:46.951][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.952][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.952][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.954][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.955][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.955][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.957][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.958][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.958][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:46.959][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.960][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.962][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.962][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:46.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.966][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:46.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:46.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:46.973][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171260621].
biodb.DEBUG[2024-05-04 16:02:46.973][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:46.974][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:46.993][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:46.994][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:46.995][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:46.999][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:47.000][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:47.001][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:47.002][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:47.007][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:47.010][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:02:47.011][cch$loadFileContent] Trying to load 1 files from cache: [1]: "93b38cb571769a97b3321f7f5a86241a".
biodb.TRACE[2024-05-04 16:02:47.012][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:02:47.013][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content".
biodb.DEBUG[2024-05-04 16:02:47.015][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:47.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:47.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:47.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:47.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:47.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:47.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:47.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:47.025][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.028][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.032][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:47.032][private$selectFields]
biodb.TRACE[2024-05-04 16:02:47.033][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:47.034][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:47.035][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:47.035][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.036][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.038][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.039][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.039][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.041][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.042][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:47.042][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:47.043][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.044][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.046][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.046][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:47.047][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.050][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.053][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.057][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171364948].
biodb.DEBUG[2024-05-04 16:02:47.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:47.058][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:47.059][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:47.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:47.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:47.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:47.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:47.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.073][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:47.074][private$selectFields]
biodb.TRACE[2024-05-04 16:02:47.075][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:47.076][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:47.076][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:47.077][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.078][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.080][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.080][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.081][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.083][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.084][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:47.084][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:47.085][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.086][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.087][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.088][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:47.089][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.092][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.095][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.099][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171364128].
biodb.DEBUG[2024-05-04 16:02:47.100][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:47.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:47.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:47.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:47.106][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:47.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:47.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:47.109][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.112][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.115][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:47.116][private$selectFields]
biodb.TRACE[2024-05-04 16:02:47.117][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:47.118][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:47.119][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:47.119][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.120][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.122][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.123][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.124][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.125][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.126][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:47.127][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:47.128][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.129][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.130][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.131][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:47.132][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.142][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171338202].
biodb.DEBUG[2024-05-04 16:02:47.142][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:47.143][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:47.145][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:47.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:47.146][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:47.151][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:47.152][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:47.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:47.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:47.158][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:47.161][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:02:47.162][cch$loadFileContent] Trying to load 1 files from cache: [1]: "405cf707472983a89dc9e0092ca888ad".
biodb.TRACE[2024-05-04 16:02:47.163][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:02:47.164][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content".
biodb.DEBUG[2024-05-04 16:02:47.166][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:47.167][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:47.168][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:47.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:47.173][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:47.174][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:47.174][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:47.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:47.176][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.189][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:47.190][private$selectFields]
biodb.TRACE[2024-05-04 16:02:47.191][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:47.193][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:47.194][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:47.195][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.195][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.197][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.198][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.199][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.200][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.201][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:47.202][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:47.203][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.204][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.205][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.206][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:47.207][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.210][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.214][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.217][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171364838].
biodb.DEBUG[2024-05-04 16:02:47.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:47.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:47.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:47.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:47.225][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:47.226][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:47.227][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:47.228][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.231][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.234][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:47.235][private$selectFields]
biodb.TRACE[2024-05-04 16:02:47.236][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:47.237][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:47.237][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:47.238][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.239][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.240][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.241][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.242][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.242][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.244][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.245][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:47.246][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:47.246][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.247][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.249][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.250][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:47.250][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.254][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.260][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171363876].
biodb.DEBUG[2024-05-04 16:02:47.261][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:47.262][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:47.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:47.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:47.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:47.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:47.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:47.271][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.274][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.277][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:47.278][private$selectFields]
biodb.TRACE[2024-05-04 16:02:47.279][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:47.280][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:47.280][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:47.281][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.282][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.283][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.284][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.285][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.286][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.287][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:47.288][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:02:47.289][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.290][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.291][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.292][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-05-04 16:02:47.293][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.296][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.299][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.302][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [74324883].
biodb.DEBUG[2024-05-04 16:02:47.303][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:47.304][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-05-04 16:02:47.321][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-04 16:02:47.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-04 16:02:47.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.324][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-04 16:02:47.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-04 16:02:47.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-04 16:02:47.331][biodb::testThat]
biodb.INFO [2024-05-04 16:02:47.332][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2024-05-04 16:02:47.333][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:02:47.333][biodb::testThat]
biodb.TRACE[2024-05-04 16:02:47.336][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-04 16:02:47.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-04 16:02:47.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.339][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-04 16:02:47.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-04 16:02:47.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.343][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.346][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.352][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.355][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:47.369][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:47.370][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:47.371][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:47.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:47.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:47.377][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:47.378][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:47.383][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:47.385][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:02:47.387][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-05-04 16:02:47.388][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:02:47.389][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-05-04 16:02:47.390][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:47.391][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:47.392][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:47.393][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:47.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:47.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:47.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:47.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:47.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:47.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:47.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:47.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:47.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.407][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:47.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:47.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.410][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:47.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:47.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.414][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:47.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:47.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.417][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:47.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:47.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.420][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:47.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:47.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:47.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:47.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:47.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:47.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:47.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:47.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:47.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:47.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.436][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:47.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:47.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.439][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:47.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:47.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.442][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:47.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:47.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.445][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:47.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:47.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.448][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:47.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:47.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.451][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:47.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:47.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.455][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:47.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:47.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.458][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:47.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:47.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.461][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:47.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:47.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.471][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.475][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.478][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:47.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:47.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.481][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:47.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:47.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.485][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:47.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:47.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.488][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:47.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:47.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.491][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.497][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:47.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:47.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.500][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:47.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:47.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.504][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:47.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:47.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.507][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:47.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:47.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.510][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:47.511][private$selectFields]
biodb.TRACE[2024-05-04 16:02:47.511][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:47.512][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:47.513][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:47.514][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:47.514][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:47.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.516][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.517][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:47.517][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:47.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.519][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.520][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:47.520][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:47.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.522][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.523][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:47.524][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:47.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.525][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.526][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:47.527][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:47.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.528][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.529][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:47.530][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:47.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.531][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.532][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:47.533][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:47.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.534][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.535][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:47.536][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:47.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.537][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.538][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:47.539][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:47.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.540][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.541][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:47.542][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:47.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.543][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.544][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.545][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.546][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.547][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:47.548][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:47.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.550][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.550][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:47.551][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:47.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.553][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.553][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.554][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.556][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.556][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:47.557][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:47.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.559][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.559][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:47.560][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:47.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.562][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.562][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:47.563][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:47.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.565][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.566][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:47.566][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:47.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.568][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.569][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:47.569][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:47.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.571][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.572][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:47.573][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:47.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.574][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.575][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:47.576][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:47.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.577][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.578][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:47.579][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:47.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.581][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.581][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:47.582][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:47.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.584][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.585][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:47.586][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:47.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.587][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.588][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:47.589][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:47.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.590][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.591][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:47.592][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:47.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.593][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.594][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.595][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.596][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.597][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:47.598][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:47.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.600][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.600][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:47.601][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:47.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.603][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.604][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.604][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.606][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.607][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:47.607][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:47.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.609][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.610][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:47.610][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:47.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.612][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.612][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:47.613][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:47.614][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:47.615][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:47.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.616][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.617][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:47.618][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:47.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.619][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.620][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:47.621][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:47.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.622][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.623][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:47.624][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:47.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.625][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.626][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:47.627][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:47.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.628][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.629][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:47.630][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:47.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.631][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.632][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:47.633][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:47.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.634][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.635][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:47.636][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:47.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.637][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.638][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:47.638][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:47.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.640][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.641][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:47.642][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:47.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.643][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.644][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.645][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.646][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.647][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:47.648][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:47.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.649][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.650][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:47.651][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:47.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.652][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.653][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.654][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.655][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.656][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:47.657][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:47.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.659][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.660][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:47.661][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:47.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.663][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.664][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-04 16:02:47.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:47.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:47.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.668][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:47.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:47.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:47.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:47.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.674][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:47.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:47.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.677][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:47.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:47.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.680][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:47.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:47.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.683][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:47.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:47.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.687][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:47.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:47.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:47.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:47.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:47.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:47.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:47.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:47.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:47.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:47.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:47.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:47.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:47.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:47.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:47.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:47.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.712][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:47.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:47.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.715][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:47.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:47.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.718][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:47.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:47.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.721][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:47.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:47.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.731][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:47.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:47.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.735][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:47.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:47.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.738][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:47.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:47.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.741][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:47.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:47.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:47.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:47.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.748][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:47.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:47.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.751][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:47.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:47.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.754][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:47.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:47.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.757][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:47.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:47.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.760][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:47.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:47.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.763][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:47.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:47.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.769][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.772][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.775][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:47.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:47.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.778][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:47.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:47.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:47.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:47.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.785][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:47.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:47.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.787][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:47.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:47.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.790][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:47.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:47.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.793][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.796][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.799][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.803][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:47.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:47.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.806][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:47.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:47.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.808][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:47.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:47.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.812][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:47.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:47.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.815][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:47.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:47.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.818][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:47.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:47.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.829][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171364948, (2S)-2-amino-6-guanidino-6-hydroxy-hexanoic acid, (2S)-2-amino-6-(diaminomethylideneamino)-6-hydroxyhexanoic acid, (2S)-2-amino-6-(diaminomethylideneamino)-6-hydroxyhexanoic acid, (2S)-2-azanyl-6-[bis(azanyl)methylideneamino]-6-oxidanyl-hexanoic acid, ...].
biodb.DEBUG[2024-05-04 16:02:47.830][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:47.830][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:47.831][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:47.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:47.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:47.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:47.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:47.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:47.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:47.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.842][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:47.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:47.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.845][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:47.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:47.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:47.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:47.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:47.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:47.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:47.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:47.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.857][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:47.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:47.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.860][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:47.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:47.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.863][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:47.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:47.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:47.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:47.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:47.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:47.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.873][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:47.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:47.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.876][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:47.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:47.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.879][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:47.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:47.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.882][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:47.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:47.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.885][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:47.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:47.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.888][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:47.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:47.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.892][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:47.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:47.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.895][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:47.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:47.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.898][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:47.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:47.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.901][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.904][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:47.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:47.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.910][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:47.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:47.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.913][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:47.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:47.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.916][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:47.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:47.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.919][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.923][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.926][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:47.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:47.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.929][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:47.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:47.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.932][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:47.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:47.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.935][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:47.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:47.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.938][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:47.939][private$selectFields]
biodb.TRACE[2024-05-04 16:02:47.940][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:47.940][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:47.941][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:47.942][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:47.943][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:47.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.944][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.945][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:47.946][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:47.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.947][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.948][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:47.949][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:47.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.950][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.951][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:47.952][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:47.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.953][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.954][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:47.955][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:47.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.956][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.957][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:47.958][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:47.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.959][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.960][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:47.961][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:47.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.962][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.963][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:47.964][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:47.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.965][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.966][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:47.967][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:47.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.968][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.969][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:47.970][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:47.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.971][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.972][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.973][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:47.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.974][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.975][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:47.976][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:47.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.977][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.978][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:47.985][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:47.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.987][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.988][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.989][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:47.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.991][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.992][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:47.993][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:47.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.994][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.995][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:47.995][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:47.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:47.997][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:47.998][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:47.998][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:47.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.000][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.001][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.001][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.003][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.004][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.005][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.006][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.007][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.008][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.009][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.010][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.011][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.012][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.013][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.014][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.015][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.016][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:48.017][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:48.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.018][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.019][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:48.020][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:48.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.021][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.022][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.022][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.024][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.025][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:48.025][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:48.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.027][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.028][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.028][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.030][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.031][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.031][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.033][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.034][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:48.034][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:48.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.036][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.037][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.037][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.039][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.040][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.041][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.042][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.043][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.043][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.045][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.046][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:48.046][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:48.047][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:48.048][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:48.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.049][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.050][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.051][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.052][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.053][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.054][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.055][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.056][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.056][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.058][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.059][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.059][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.061][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.061][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.062][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.064][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.064][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:48.065][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:48.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.067][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.067][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:48.068][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:48.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.070][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.070][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.071][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.073][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.073][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:48.074][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:48.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.075][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.076][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.077][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.078][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.079][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.080][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.081][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.082][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:48.083][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:48.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.084][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.085][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.086][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.087][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.088][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.089][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.090][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.091][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.092][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.093][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.094][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-04 16:02:48.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:48.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:48.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:48.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:48.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.101][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:48.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:48.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.107][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.110][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.113][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.123][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.126][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.132][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.135][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.138][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.141][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.144][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.147][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.151][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:48.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:48.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.154][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:48.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:48.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.157][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:48.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:48.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.160][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:48.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:48.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.163][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:48.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:48.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.166][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:48.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:48.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.169][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.173][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.176][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.179][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:48.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:48.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.182][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:48.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:48.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.185][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:48.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:48.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.188][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.192][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.195][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.198][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.201][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.204][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.207][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:48.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:48.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.210][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:48.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:48.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.213][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:48.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:48.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.216][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.219][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.222][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.226][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.229][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.239][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.243][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.246][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.249][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.259][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171334113, 4-pyrazolo[1,5-a]pyrazin-4-ylmorpholine, 4-(4-pyrazolo[1,5-a]pyrazinyl)morpholine, 4-pyrazolo[1,5-a]pyrazin-4-ylmorpholine, 4-pyrazolo[1,5-a]pyrazin-4-ylmorpholine, ...].
biodb.DEBUG[2024-05-04 16:02:48.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:48.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:48.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:48.266][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:48.267][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:48.268][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:48.268][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:48.269][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:48.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:48.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:48.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:48.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.276][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.283][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.295][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.301][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.304][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.307][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:48.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:48.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.310][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:48.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:48.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.313][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:48.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:48.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.316][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:48.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:48.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.319][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.322][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.325][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:48.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:48.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.328][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:48.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:48.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.331][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.334][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.341][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.344][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:48.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:48.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.347][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:48.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:48.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.350][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.353][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.356][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.362][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.365][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.368][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:48.369][private$selectFields]
biodb.TRACE[2024-05-04 16:02:48.370][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:48.371][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:48.371][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:48.372][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:48.373][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:48.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.374][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.375][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.376][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.377][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.378][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.379][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.380][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.381][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.382][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.383][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.384][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.385][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.387][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.387][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.388][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.390][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.390][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:48.391][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:48.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.393][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.393][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:48.394][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:48.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.396][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.396][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.397][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.399][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.399][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:48.400][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:48.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.401][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.402][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.403][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.404][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.405][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.406][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.407][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.408][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:48.409][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:48.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.410][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.411][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.412][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.413][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.414][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.415][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.416][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.417][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.418][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.419][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.420][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:48.421][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:48.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.422][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.423][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.424][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.425][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.426][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.427][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.428][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.429][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.430][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.431][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.432][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.433][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.434][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.435][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.436][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.437][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.438][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:48.439][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:48.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.440][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.441][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:48.442][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:48.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.443][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.444][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.444][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.446][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.447][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:48.447][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:48.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.449][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.449][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.450][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.451][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.452][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.453][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.454][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.455][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:48.456][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:48.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.457][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.458][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.459][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.460][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.461][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.462][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.463][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.464][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.464][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.466][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.467][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:48.467][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:48.468][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:48.469][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:48.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.470][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.471][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.472][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.473][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.474][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.475][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.476][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.477][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.477][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.479][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.480][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.480][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.482][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.482][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.483][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.491][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.492][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:48.493][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:48.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.495][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.496][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:48.497][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:48.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.498][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.499][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.500][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.501][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.502][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:48.503][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:48.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.504][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.505][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.506][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.507][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.508][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.509][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.510][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.511][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:48.512][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:48.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.513][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.514][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.515][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.517][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.517][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.518][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.520][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.521][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.521][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.523][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.524][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-04 16:02:48.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:48.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:48.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:48.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:48.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:48.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:48.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.538][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.541][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.544][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.547][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.550][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.557][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.560][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.563][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.566][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.569][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.572][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.581][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:48.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:48.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.584][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:48.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:48.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.587][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:48.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:48.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.590][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:48.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:48.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.593][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:48.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:48.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.597][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:48.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:48.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.600][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.603][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.606][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.609][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:48.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:48.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.612][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:48.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:48.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.615][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:48.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:48.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.618][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.624][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.627][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.637][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:48.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:48.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.640][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:48.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:48.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.643][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:48.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:48.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.646][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.649][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.652][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.655][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.658][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.661][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.665][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.668][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.671][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.680][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171326497, 5-[[3-(difluoromethyl)azetidin-1-yl]methyl]thiazole, 5-[[3-(difluoromethyl)-1-azetidinyl]methyl]thiazole, 5-[[3-(difluoromethyl)azetidin-1-yl]methyl]-1,3-thiazole, 5-[[3-[bis(fluoranyl)methyl]azetidin-1-yl]methyl]-1,3-thiazole, ...].
biodb.DEBUG[2024-05-04 16:02:48.681][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:48.681][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:48.684][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:48.685][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:48.685][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:48.690][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:48.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:48.692][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:48.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:48.698][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:48.700][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:02:48.701][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-05-04 16:02:48.702][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:02:48.703][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-05-04 16:02:48.705][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:48.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:48.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:48.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:48.712][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:48.712][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:48.713][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:48.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:48.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:48.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:48.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.718][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:48.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:48.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.727][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.737][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.740][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.750][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.757][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.760][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:48.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:48.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.763][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:48.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:48.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.766][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:48.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:48.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.769][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:48.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:48.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.772][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.779][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:48.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:48.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.782][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:48.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:48.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.788][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.792][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.798][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:48.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:48.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.801][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:48.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:48.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.804][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.807][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.810][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.813][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.816][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.819][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.822][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:48.823][private$selectFields]
biodb.TRACE[2024-05-04 16:02:48.824][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:48.824][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:48.825][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:48.826][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:48.827][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:48.827][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.828][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.829][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.830][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.831][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.832][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.833][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.834][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.835][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.836][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.838][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.838][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.839][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.841][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.842][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.842][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.844][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.844][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:48.845][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:48.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.847][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.848][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:48.848][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:48.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.850][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.851][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.851][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.853][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.854][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:48.855][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:48.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.856][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.857][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.858][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.859][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.860][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.861][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.862][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.863][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:48.864][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:48.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.866][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.866][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.867][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.869][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.869][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.870][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.872][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.873][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.873][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.875][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.876][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:48.876][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:48.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.878][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.879][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.879][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.881][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.882][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.882][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.884][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.885][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.886][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.887][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.888][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.888][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.890][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.891][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.891][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.893][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.894][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:48.894][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:48.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.896][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.897][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:48.897][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:48.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.899][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.900][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.900][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.902][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.903][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:48.903][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:48.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.905][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.906][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.907][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.908][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.909][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.909][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.911][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.912][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:48.913][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:48.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.914][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.915][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.916][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.917][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.918][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.919][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.920][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.921][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.922][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.923][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.924][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:48.925][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:48.926][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:48.927][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:48.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.928][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.929][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.930][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.931][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.932][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.933][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.933][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.934][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.935][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.936][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:48.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.937][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.938][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.939][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:48.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.940][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.941][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.942][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:48.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.943][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.944][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:48.945][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:48.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.946][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.947][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:48.948][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:48.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.949][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.950][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.951][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:48.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.952][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.953][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:48.954][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:48.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.955][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.956][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.957][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:48.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.958][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.959][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.960][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:48.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.961][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.962][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:48.963][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:48.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.964][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.965][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.966][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:48.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.968][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.968][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.969][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:48.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.971][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.971][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.972][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:48.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.974][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.974][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-04 16:02:48.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:48.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:48.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.978][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:48.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:48.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:48.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:48.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.988][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.991][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:48.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.994][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:48.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:48.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:48.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.007][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.018][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.021][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.024][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.027][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.030][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.037][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.040][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:49.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:49.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.043][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:49.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:49.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.046][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:49.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:49.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:49.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:49.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.053][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:49.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:49.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.056][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:49.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:49.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.059][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.062][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.065][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.068][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:49.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:49.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.071][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:49.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:49.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.074][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:49.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:49.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.077][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.080][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.083][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.089][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.092][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.095][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:49.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:49.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.098][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:49.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:49.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.101][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:49.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:49.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.104][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:49.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:49.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.107][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:49.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:49.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.110][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:49.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:49.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.113][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:49.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:49.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.116][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:49.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:49.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.119][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:49.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:49.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.122][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:49.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:49.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.125][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:49.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:49.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.128][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:49.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:49.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.137][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171341956, oxetan-3-yl 6,6,6-trifluorohexanoate, 6,6,6-trifluorohexanoic acid 3-oxetanyl ester, oxetan-3-yl 6,6,6-trifluorohexanoate, oxetan-3-yl 6,6,6-tris(fluoranyl)hexanoate, ...].
biodb.DEBUG[2024-05-04 16:02:49.138][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:49.139][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:49.139][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:49.144][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:49.145][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:49.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:49.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:49.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:49.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:49.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:49.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:49.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.153][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:49.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:49.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:49.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:49.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.159][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.184][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:49.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:49.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.187][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:49.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:49.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.190][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:49.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:49.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.193][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:49.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:49.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.196][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.202][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:49.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:49.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.205][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:49.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:49.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.209][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.212][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.215][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.219][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.222][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:49.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:49.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.225][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:49.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:49.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.229][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:49.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:49.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.232][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:49.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:49.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.235][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:49.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:49.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.238][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:49.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:49.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.242][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:49.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:49.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.245][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:49.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:49.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.248][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:49.249][private$selectFields]
biodb.TRACE[2024-05-04 16:02:49.249][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:49.250][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:49.251][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:49.252][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:49.253][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:49.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.283][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.284][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:49.285][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:49.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.287][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.288][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.289][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.290][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.291][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.292][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.294][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.294][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.295][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.297][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.297][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.298][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.300][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.301][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:49.301][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:49.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.303][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.304][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:49.305][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:49.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.306][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.307][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.308][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.309][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.310][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:49.311][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:49.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.312][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.313][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.314][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.315][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.316][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.317][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.318][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.319][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:49.320][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:49.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.321][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.322][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:49.323][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:49.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.324][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.325][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:49.326][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:49.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.327][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.328][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:49.329][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:49.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.330][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.331][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:49.332][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:49.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.333][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.334][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:49.335][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:49.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.336][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.337][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.338][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.339][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.340][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.341][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.342][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.343][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.344][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.345][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.346][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.347][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.348][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.349][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:49.350][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:49.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.351][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.352][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:49.353][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:49.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.354][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.355][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.356][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.357][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.358][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:49.359][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:49.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.361][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.361][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.362][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.364][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.365][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.366][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.367][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.368][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:49.369][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:49.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.370][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.371][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:49.372][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:49.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.373][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.374][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:49.375][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:49.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.376][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.377][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:49.378][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:49.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.379][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.380][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:49.381][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:49.382][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:49.383][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:49.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.384][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.385][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:49.386][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:49.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.387][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.388][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.389][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.390][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.391][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.392][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.394][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.394][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.395][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.396][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.397][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.398][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.400][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.401][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:49.401][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:49.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.403][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.404][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:49.405][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:49.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.406][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.407][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.408][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.409][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.410][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:49.411][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:49.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.412][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.413][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.413][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.415][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.416][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.416][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.418][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.419][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:49.420][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:49.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.421][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.422][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:49.423][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:49.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.425][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.426][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:49.427][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:49.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.428][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.429][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:49.430][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:49.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.431][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.432][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-04 16:02:49.433][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:49.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:49.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.436][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:49.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:49.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:49.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:49.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.442][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:49.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:49.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.445][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:49.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:49.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:49.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:49.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.458][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.461][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.467][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.486][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.489][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:49.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:49.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.492][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:49.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:49.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.495][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:49.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:49.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.499][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:49.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:49.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.502][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:49.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:49.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.505][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:49.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:49.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.509][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.512][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.515][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.518][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:49.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:49.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.521][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:49.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:49.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.524][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:49.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:49.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.527][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.530][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.547][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.550][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.553][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:49.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:49.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.557][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:49.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:49.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.560][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:49.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:49.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.563][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:49.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:49.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.567][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:49.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:49.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.570][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:49.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:49.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.573][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:49.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:49.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.577][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:49.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:49.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.580][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:49.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:49.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.583][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:49.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:49.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.586][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:49.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:49.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.590][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:49.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:49.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.600][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171316324, 2-(cyclopropylamino)-6-(trifluoromethyl)benzonitrile, 2-(cyclopropylamino)-6-(trifluoromethyl)benzonitrile, 2-(cyclopropylamino)-6-(trifluoromethyl)benzonitrile, 2-(cyclopropylamino)-6-(trifluoromethyl)benzenecarbonitrile, ...].
biodb.DEBUG[2024-05-04 16:02:49.601][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:49.601][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:49.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:49.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:49.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:49.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:49.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:49.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:49.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:49.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:49.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:49.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.616][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:49.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:49.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.619][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:49.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:49.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.635][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.641][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.644][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.648][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:49.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:49.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.651][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:49.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:49.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:49.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:49.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.657][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:49.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:49.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.660][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.663][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.666][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:49.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:49.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.669][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:49.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:49.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.672][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.678][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.681][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.685][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:49.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:49.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.688][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:49.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:49.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.691][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:49.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:49.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.694][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:49.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:49.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.697][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:49.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:49.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.700][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:49.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:49.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.703][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:49.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:49.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.706][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:49.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:49.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.710][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:49.710][private$selectFields]
biodb.TRACE[2024-05-04 16:02:49.711][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:49.712][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:49.713][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:49.714][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:49.714][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:49.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.716][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.717][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:49.717][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:49.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.719][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.720][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.721][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.722][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.723][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.724][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.725][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.726][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.727][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.728][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.729][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.730][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.731][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.732][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:49.733][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:49.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.735][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.735][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:49.736][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:49.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.738][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.738][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.739][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.740][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.741][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:49.742][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:49.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.744][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.744][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.745][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.747][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.747][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.748][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.750][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.750][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:49.751][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:49.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.753][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.754][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:49.754][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:49.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.756][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.757][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:49.757][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:49.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.759][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.760][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:49.760][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:49.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.762][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.763][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:49.763][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:49.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.765][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.766][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:49.767][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:49.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.768][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.769][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.770][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.771][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.772][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.773][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.774][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.775][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.776][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.777][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.778][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.779][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.781][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.781][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:49.782][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:49.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.784][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.785][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:49.785][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:49.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.787][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.788][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.788][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.790][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.791][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:49.792][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:49.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.793][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.794][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.795][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.796][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.797][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.804][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.806][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.807][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:49.808][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:49.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.810][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.811][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:49.811][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:49.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.813][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.814][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:49.815][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:49.815][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.816][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.817][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:49.817][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:49.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.819][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.820][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:49.820][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:49.821][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:49.822][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:49.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.824][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.825][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:49.825][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:49.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.827][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.828][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.829][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.830][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.831][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.832][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.833][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.834][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.835][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.836][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.837][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.838][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.839][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.840][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:49.841][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:49.842][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.842][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.843][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:49.844][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:49.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.845][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.846][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.847][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.849][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.849][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:49.850][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:49.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.852][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.852][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.853][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.855][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.856][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.856][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.858][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.859][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:49.860][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:49.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.861][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.862][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:49.863][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:49.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.864][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.865][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:49.866][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:49.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.867][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.868][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:49.869][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:49.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.870][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.871][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-04 16:02:49.872][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:49.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:49.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.875][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:49.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:49.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:49.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:49.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.882][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:49.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:49.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.885][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:49.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:49.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.888][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:49.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:49.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.894][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:49.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:49.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.911][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.918][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:49.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.925][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.928][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:49.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.932][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:49.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:49.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.935][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:49.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:49.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.938][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:49.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:49.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:49.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:49.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:49.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:49.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.948][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:49.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:49.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.955][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.958][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:49.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.961][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:49.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:49.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.964][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:49.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:49.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.967][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:49.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:49.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.971][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.974][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.977][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:49.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.981][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.984][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.987][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:49.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.990][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:49.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:49.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.993][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:49.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:49.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:49.996][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:49.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:49.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:49.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.000][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.003][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.006][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.009][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.012][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.016][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.019][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.022][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.025][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.034][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171316323, 2-(cyclopropylamino)-4-(trifluoromethyl)benzonitrile, 2-(cyclopropylamino)-4-(trifluoromethyl)benzonitrile, 2-(cyclopropylamino)-4-(trifluoromethyl)benzonitrile, 2-(cyclopropylamino)-4-(trifluoromethyl)benzenecarbonitrile, ...].
biodb.DEBUG[2024-05-04 16:02:50.035][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:50.036][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:50.043][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:50.044][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:50.044][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:50.049][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:50.050][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:50.051][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:50.051][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:50.057][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:50.059][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:02:50.060][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-05-04 16:02:50.061][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:02:50.062][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-05-04 16:02:50.070][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:50.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:50.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:50.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:50.078][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:50.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:50.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:50.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:50.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:50.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:50.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:50.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:50.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.088][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:50.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:50.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.091][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:50.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:50.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:50.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:50.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.097][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:50.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:50.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.100][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:50.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:50.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.103][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:50.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:50.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.106][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:50.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:50.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.110][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:50.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:50.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.113][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:50.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:50.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.116][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:50.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:50.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.119][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:50.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:50.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.122][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:50.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:50.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:50.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:50.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.128][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:50.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:50.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.131][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:50.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:50.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.134][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:50.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:50.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.138][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:50.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:50.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.141][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:50.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:50.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.144][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:50.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:50.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.148][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:50.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:50.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.151][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:50.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:50.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:50.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:50.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.157][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:50.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:50.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.161][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:50.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:50.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.164][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.167][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.170][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.173][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.177][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.180][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.183][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:50.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:50.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.186][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:50.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:50.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.190][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:50.190][private$selectFields]
biodb.TRACE[2024-05-04 16:02:50.191][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:50.192][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:50.192][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:50.193][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:50.194][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:50.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.196][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.197][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:50.197][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:50.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.199][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.200][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:50.201][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:50.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.202][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.203][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:50.204][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:50.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.205][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.206][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:50.207][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:50.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.208][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.209][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:50.210][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:50.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.211][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.212][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:50.213][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:50.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.214][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.215][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:50.216][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:50.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.218][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.218][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:50.219][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:50.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.221][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.222][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:50.222][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:50.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.224][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.225][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:50.225][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:50.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.227][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.228][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:50.228][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:50.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.230][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.231][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:50.231][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:50.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.233][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.234][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.235][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.236][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.237][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.238][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.239][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.240][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.241][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.242][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.243][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:50.244][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:50.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.245][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.246][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:50.247][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:50.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.248][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.249][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:50.250][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:50.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.251][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.252][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:50.253][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:50.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.254][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.255][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:50.256][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:50.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.257][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.258][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:50.259][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:50.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.260][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.261][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:50.262][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:50.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.264][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.264][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:50.265][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:50.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.267][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.268][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:50.268][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:50.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.270][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.271][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:50.271][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:50.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.273][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.274][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:50.275][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:50.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.276][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.277][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:50.278][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:50.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.279][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.280][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:50.280][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:50.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.282][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.283][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:50.284][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:50.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.285][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.286][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.287][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.288][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.289][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.290][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.292][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.292][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.293][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.295][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.296][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:50.296][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:50.297][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.298][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.299][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:50.300][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:50.301][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:50.301][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:50.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.303][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.304][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:50.305][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:50.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.306][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.307][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:50.308][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:50.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.309][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.310][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:50.311][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:50.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.312][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.313][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:50.314][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:50.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.315][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.316][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:50.317][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:50.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.319][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.319][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:50.320][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:50.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.322][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.322][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:50.323][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:50.324][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.325][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.325][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:50.332][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:50.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.334][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.336][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:50.337][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:50.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.338][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.339][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:50.340][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:50.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.342][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.342][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:50.343][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:50.344][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.345][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.346][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:50.347][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:50.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.348][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.349][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.350][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.351][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.352][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.353][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.355][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.355][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.356][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.358][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.359][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-04 16:02:50.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:50.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:50.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.363][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:50.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:50.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.366][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:50.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:50.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:50.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:50.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:50.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:50.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:50.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:50.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.380][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:50.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:50.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:50.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:50.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.386][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:50.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:50.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.390][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:50.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:50.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:50.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:50.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.396][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:50.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:50.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.399][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:50.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:50.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.402][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:50.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:50.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.405][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:50.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:50.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:50.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:50.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.412][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:50.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:50.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.415][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:50.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:50.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.418][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:50.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:50.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.422][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:50.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:50.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.425][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:50.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:50.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.428][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:50.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:50.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.431][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:50.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:50.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.434][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:50.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:50.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.438][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:50.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:50.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.441][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:50.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:50.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.444][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:50.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:50.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.448][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:50.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:50.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.451][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:50.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:50.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.454][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:50.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:50.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:50.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:50.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.461][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:50.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:50.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.464][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:50.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:50.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.468][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:50.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:50.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.471][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:50.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:50.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.474][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:50.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:50.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.477][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:50.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:50.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.481][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:50.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:50.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.484][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:50.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:50.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.487][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.490][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.497][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.500][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.504][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.507][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.510][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.513][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.522][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171364948, (2S)-2-amino-6-guanidino-6-hydroxy-hexanoic acid, (2S)-2-amino-6-(diaminomethylideneamino)-6-hydroxyhexanoic acid, (2S)-2-amino-6-(diaminomethylideneamino)-6-hydroxyhexanoic acid, (2S)-2-azanyl-6-[bis(azanyl)methylideneamino]-6-oxidanyl-hexanoic acid, ...].
biodb.DEBUG[2024-05-04 16:02:50.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:50.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:50.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:50.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:50.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:50.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:50.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:50.533][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:50.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:50.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:50.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:50.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:50.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:50.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.543][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:50.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:50.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.546][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:50.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:50.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:50.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:50.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:50.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:50.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.556][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:50.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:50.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:50.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:50.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.562][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:50.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:50.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:50.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:50.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.568][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:50.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:50.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.572][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:50.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:50.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.575][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:50.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:50.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.578][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:50.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:50.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.581][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:50.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:50.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:50.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:50.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.588][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:50.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:50.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.591][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:50.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:50.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.594][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:50.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:50.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.604][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:50.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:50.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.608][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:50.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:50.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.611][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:50.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:50.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.615][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:50.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:50.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.618][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:50.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:50.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.621][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:50.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:50.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.625][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.631][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.635][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.638][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.641][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.645][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:50.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:50.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.648][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:50.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:50.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.651][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:50.652][private$selectFields]
biodb.TRACE[2024-05-04 16:02:50.653][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:50.654][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:50.654][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:50.655][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:50.656][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:50.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.658][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.658][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:50.659][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:50.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.661][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.662][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:50.663][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:50.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.664][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.665][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:50.666][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:50.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.667][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.669][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:50.670][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:50.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.671][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.672][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:50.673][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:50.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.674][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.675][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:50.676][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:50.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.678][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.679][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:50.679][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:50.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.681][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.682][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:50.683][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:50.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.684][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.685][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:50.686][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:50.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.688][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.688][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:50.689][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:50.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.691][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.692][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:50.693][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:50.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.694][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.695][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:50.696][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:50.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.697][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.698][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.699][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.701][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.701][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.702][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.704][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.704][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.705][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.707][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.708][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:50.709][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:50.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.710][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.711][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:50.712][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:50.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.713][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.714][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:50.715][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:50.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.716][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.717][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:50.718][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:50.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.720][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.720][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:50.721][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:50.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.723][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.724][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:50.724][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:50.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.726][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.727][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:50.728][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:50.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.729][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.730][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:50.731][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:50.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.732][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.733][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:50.734][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:50.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.735][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.736][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:50.737][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:50.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.739][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.740][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:50.740][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:50.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.742][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.743][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:50.744][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:50.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.745][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.746][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:50.747][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:50.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.748][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.749][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:50.750][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:50.751][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.752][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.752][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.753][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.755][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.756][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.756][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.758][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.759][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.760][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.761][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.762][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:50.763][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:50.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.764][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.765][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:50.766][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:50.767][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:50.768][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:50.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.769][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.770][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:50.771][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:50.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.772][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.773][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:50.774][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:50.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.775][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.776][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:50.777][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:50.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.779][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.779][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:50.780][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:50.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.782][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.783][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:50.783][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:50.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.785][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.786][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:50.787][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:50.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.788][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.789][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:50.790][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:50.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.791][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.792][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:50.793][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:50.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.795][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.795][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:50.796][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:50.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.798][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.799][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:50.799][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:50.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.801][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.802][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:50.803][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:50.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.804][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.805][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:50.806][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:50.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.807][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.808][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.809][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.810][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.811][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.812][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.813][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.814][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.815][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.817][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.817][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-04 16:02:50.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:50.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:50.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:50.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:50.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:50.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:50.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:50.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:50.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.832][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:50.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:50.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:50.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:50.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.838][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:50.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:50.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.841][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:50.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:50.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:50.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:50.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:50.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:50.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:50.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:50.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:50.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:50.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.857][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:50.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:50.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.860][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:50.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:50.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.869][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:50.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:50.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.874][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:50.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:50.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.877][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:50.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:50.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:50.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:50.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.884][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:50.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:50.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.887][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:50.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:50.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.891][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:50.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:50.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:50.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:50.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.897][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:50.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:50.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.900][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:50.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:50.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.904][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:50.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:50.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.907][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:50.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:50.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:50.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:50.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.913][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:50.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:50.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.916][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:50.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:50.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.920][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:50.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:50.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.923][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:50.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:50.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.926][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:50.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:50.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.929][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:50.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:50.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.932][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:50.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:50.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.935][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:50.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:50.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.939][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:50.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:50.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.942][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:50.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:50.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.945][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:50.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:50.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.949][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:50.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:50.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.952][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.955][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.958][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:50.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.962][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.965][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.968][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:50.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.972][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.975][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.978][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:50.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.988][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171334113, 4-pyrazolo[1,5-a]pyrazin-4-ylmorpholine, 4-(4-pyrazolo[1,5-a]pyrazinyl)morpholine, 4-pyrazolo[1,5-a]pyrazin-4-ylmorpholine, 4-pyrazolo[1,5-a]pyrazin-4-ylmorpholine, ...].
biodb.DEBUG[2024-05-04 16:02:50.989][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:50.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:50.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:50.995][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:50.996][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:50.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:50.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:50.998][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:50.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:51.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.001][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:51.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:51.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.005][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.008][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.020][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.026][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.030][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.033][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.036][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:51.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:51.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.040][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:51.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:51.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.043][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:51.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:51.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.046][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:51.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:51.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.050][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:51.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:51.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.053][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:51.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:51.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.056][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:51.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:51.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.059][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:51.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:51.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.063][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.066][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.069][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.072][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.075][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:51.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:51.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.078][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:51.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:51.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.081][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:51.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:51.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.084][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:51.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:51.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.088][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:51.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:51.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.091][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:51.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:51.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.094][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:51.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:51.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.097][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:51.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:51.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.100][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:51.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:51.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.103][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:51.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:51.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.106][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:51.107][private$selectFields]
biodb.TRACE[2024-05-04 16:02:51.107][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:51.108][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:51.109][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:51.109][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:51.110][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:51.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.112][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.112][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.113][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.115][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.115][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.116][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.118][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.119][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.119][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.121][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.121][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.122][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.124][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.124][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.125][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.127][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.134][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:51.135][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:51.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.137][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.138][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:51.139][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:51.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.140][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.141][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:51.142][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:51.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.143][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.144][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:51.145][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:51.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.146][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.147][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.148][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.149][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.150][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.151][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.153][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.154][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:51.154][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:51.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.156][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.157][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:51.158][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:51.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.159][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.160][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:51.161][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:51.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.162][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.163][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:51.164][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:51.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.166][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.166][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:51.167][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:51.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.169][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.170][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:51.170][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:51.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.172][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.173][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.173][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.175][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.175][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.176][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.178][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.178][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.179][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.181][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.182][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.182][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.184][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.185][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.185][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.187][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.188][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:51.188][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:51.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.190][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.191][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:51.191][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:51.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.193][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.194][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:51.194][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:51.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.196][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.197][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:51.197][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:51.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.199][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.200][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.201][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.202][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.203][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.204][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.205][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.206][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:51.207][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:51.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.208][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.209][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:51.210][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:51.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.213][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.214][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:51.215][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:51.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.216][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.217][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:51.218][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:51.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.219][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.220][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:51.221][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:51.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.222][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.223][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:51.224][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:51.224][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:51.225][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:51.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.227][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.228][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.229][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.230][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.231][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.232][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.233][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.234][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.235][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.237][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.237][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.238][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.240][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.241][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.242][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.243][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.244][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:51.245][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:51.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.246][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.247][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:51.248][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:51.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.250][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.250][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:51.251][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:51.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.253][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.254][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:51.254][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:51.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.256][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.257][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.258][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.258][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.259][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.260][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.261][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.262][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.263][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:51.264][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:51.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.266][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.266][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:51.267][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:51.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.269][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.269][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:51.270][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:51.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.272][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.273][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:51.273][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:51.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.275][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.276][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-04 16:02:51.277][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:51.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:51.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:51.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:51.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:51.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:51.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.290][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.302][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.312][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.319][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.328][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.335][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:51.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:51.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.338][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:51.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:51.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.341][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:51.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:51.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:51.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:51.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.348][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:51.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:51.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:51.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:51.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:51.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:51.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.357][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:51.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:51.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.361][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:51.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:51.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.364][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:51.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:51.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.367][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:51.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:51.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.370][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:51.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:51.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.373][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.380][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.383][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.387][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.390][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.399][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:51.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:51.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.404][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:51.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:51.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.407][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:51.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:51.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.410][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:51.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:51.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.413][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:51.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:51.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.417][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:51.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:51.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.421][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:51.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:51.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.424][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:51.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:51.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.427][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:51.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:51.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.431][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:51.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:51.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.434][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:51.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:51.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.437][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:51.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:51.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.447][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171326497, 5-[[3-(difluoromethyl)azetidin-1-yl]methyl]thiazole, 5-[[3-(difluoromethyl)-1-azetidinyl]methyl]thiazole, 5-[[3-(difluoromethyl)azetidin-1-yl]methyl]-1,3-thiazole, 5-[[3-[bis(fluoranyl)methyl]azetidin-1-yl]methyl]-1,3-thiazole, ...].
biodb.DEBUG[2024-05-04 16:02:51.448][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:51.448][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:51.451][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:51.452][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:51.453][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:51.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:51.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:51.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:51.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:51.465][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:51.467][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:02:51.469][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-05-04 16:02:51.470][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:02:51.471][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-05-04 16:02:51.472][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:51.474][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:51.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:51.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:51.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:51.480][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:51.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:51.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:51.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:51.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:51.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:51.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:51.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.492][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.495][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.502][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.505][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.508][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.518][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.521][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:51.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:51.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.524][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:51.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:51.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:51.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:51.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.530][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:51.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:51.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:51.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:51.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.536][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:51.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:51.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.539][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:51.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:51.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.543][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:51.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:51.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.546][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.549][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.552][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.556][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.558][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:51.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:51.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.561][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:51.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:51.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.564][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:51.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:51.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.567][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:51.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:51.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.570][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:51.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:51.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.573][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:51.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:51.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.576][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:51.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:51.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.579][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:51.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:51.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.582][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:51.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:51.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.585][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:51.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:51.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.588][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:51.588][private$selectFields]
biodb.TRACE[2024-05-04 16:02:51.589][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:51.590][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:51.590][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:51.591][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:51.592][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:51.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.593][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.594][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.595][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.596][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.597][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.597][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.599][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.600][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.601][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.602][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.603][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.603][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.605][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.606][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.606][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.608][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.609][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:51.609][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:51.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.611][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.612][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:51.612][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:51.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.614][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.614][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:51.615][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:51.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.617][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.618][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:51.618][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:51.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.620][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.621][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.622][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.623][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.624][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.624][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.626][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.626][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:51.627][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:51.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.629][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.629][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:51.630][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:51.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.632][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.632][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:51.633][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:51.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.635][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.635][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:51.636][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:51.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.637][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.638][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:51.639][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:51.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.640][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.641][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:51.642][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:51.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.643][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.644][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.645][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.646][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.647][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.648][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.649][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.650][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.657][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.659][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.660][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.661][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.662][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.663][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.664][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.665][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.666][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:51.666][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:51.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.668][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.669][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:51.669][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:51.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.671][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.672][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:51.672][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:51.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.674][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.674][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:51.675][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:51.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.677][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.677][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.678][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.680][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.680][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.681][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.683][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.683][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:51.684][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:51.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.686][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.686][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:51.687][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:51.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.688][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.689][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:51.690][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:51.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.691][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.692][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:51.693][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:51.694][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.694][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.695][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:51.696][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:51.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.697][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.698][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:51.699][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:51.700][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:51.700][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:51.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.702][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.702][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.703][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.705][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.705][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.706][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.707][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.708][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.709][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.710][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.711][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.712][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.713][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.714][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.715][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.716][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.717][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:51.718][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:51.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.719][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.720][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:51.721][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:51.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.722][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.723][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:51.724][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:51.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.725][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.726][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:51.727][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:51.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.728][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.729][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.730][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.731][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.732][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.732][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.734][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.735][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:51.735][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:51.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.737][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.738][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:51.738][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:51.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.740][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.740][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:51.741][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:51.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.743][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.743][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:51.744][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:51.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.746][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.746][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-04 16:02:51.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:51.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:51.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:51.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:51.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:51.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:51.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.757][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.766][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.769][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.772][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.775][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.781][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.784][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.787][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.790][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.797][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.800][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.803][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:51.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:51.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.806][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:51.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:51.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.809][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:51.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:51.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.812][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:51.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:51.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.815][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:51.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:51.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.818][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:51.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:51.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.821][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:51.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:51.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:51.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:51.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.827][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:51.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:51.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.831][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:51.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:51.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.833][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:51.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:51.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.836][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:51.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:51.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.840][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.842][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.845][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.852][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.854][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.858][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:51.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:51.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.861][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:51.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:51.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.864][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:51.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:51.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.867][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:51.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:51.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.870][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:51.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:51.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.873][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:51.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:51.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.877][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:51.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:51.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.880][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:51.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:51.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.882][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:51.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:51.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.886][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:51.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:51.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.889][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:51.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:51.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.892][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:51.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:51.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.908][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171341956, oxetan-3-yl 6,6,6-trifluorohexanoate, 6,6,6-trifluorohexanoic acid 3-oxetanyl ester, oxetan-3-yl 6,6,6-trifluorohexanoate, oxetan-3-yl 6,6,6-tris(fluoranyl)hexanoate, ...].
biodb.DEBUG[2024-05-04 16:02:51.909][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:51.910][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:51.910][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:51.945][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:51.946][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:51.947][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:51.947][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:51.948][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:51.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:51.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.952][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:51.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:51.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.955][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.958][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:51.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.961][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.964][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:51.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.971][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:51.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.974][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:51.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.980][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:51.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.986][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:51.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:51.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.989][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:51.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:51.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.993][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:51.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:51.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.996][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:51.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:51.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.002][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.005][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:52.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:52.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.008][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:52.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:52.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.014][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.018][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.021][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.024][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:52.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:52.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.027][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:52.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:52.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.030][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.033][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.036][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:52.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:52.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.039][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:52.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:52.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.042][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:52.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:52.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.045][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:52.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:52.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.049][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:52.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:52.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.052][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:52.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:52.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.055][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:52.056][private$selectFields]
biodb.TRACE[2024-05-04 16:02:52.056][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:52.057][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:52.058][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:52.059][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:52.059][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:52.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.061][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.062][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:52.062][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:52.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.064][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.065][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:52.065][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:52.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.067][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.068][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:52.068][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:52.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.070][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.071][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:52.071][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:52.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.073][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.074][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:52.074][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:52.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.076][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.077][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:52.077][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:52.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.079][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.079][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:52.080][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:52.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.082][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.083][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.083][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.085][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.086][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:52.086][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:52.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.088][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.088][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.089][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.091][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.091][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.092][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.094][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.094][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:52.095][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:52.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.097][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.097][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.098][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.100][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.101][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:52.101][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:52.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.103][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.104][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:52.104][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:52.105][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.106][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.106][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:52.107][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:52.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.109][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.109][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:52.110][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:52.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.112][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.112][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:52.113][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:52.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.115][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.115][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:52.116][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:52.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.118][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.118][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:52.119][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:52.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.120][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.121][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:52.122][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:52.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.124][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.124][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:52.125][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:52.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.127][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.128][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:52.128][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:52.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.130][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.131][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:52.132][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:52.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.133][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.134][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.135][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.136][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.137][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:52.138][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:52.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.139][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.140][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.141][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.143][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.143][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.144][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.146][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.146][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:52.147][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:52.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.149][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.150][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.150][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.152][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.153][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:52.154][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:52.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.155][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.156][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:52.157][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:52.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.158][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.159][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:52.160][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:52.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.161][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.162][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:52.163][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:52.163][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:52.164][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:52.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.166][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.166][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:52.167][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:52.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.169][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.169][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:52.170][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:52.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.172][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.173][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:52.173][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:52.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.175][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.176][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:52.177][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:52.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.178][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.179][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:52.180][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:52.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.181][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.182][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:52.183][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:52.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.184][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.185][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:52.185][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:52.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.193][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.194][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.196][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.197][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.198][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:52.199][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:52.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.200][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.201][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.202][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.203][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.204][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.205][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.206][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.207][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:52.208][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:52.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.209][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.210][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.211][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.212][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.213][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:52.214][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:52.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.216][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.216][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:52.217][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:52.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.219][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.220][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-04 16:02:52.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:52.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:52.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:52.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:52.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:52.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:52.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:52.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:52.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:52.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:52.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.236][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:52.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:52.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.239][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:52.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:52.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.242][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:52.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:52.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.246][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:52.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:52.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.249][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:52.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:52.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:52.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:52.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.256][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:52.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:52.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:52.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:52.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.264][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:52.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:52.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.267][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:52.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:52.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:52.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:52.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.273][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:52.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:52.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.276][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:52.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:52.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.280][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:52.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:52.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.283][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:52.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:52.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.286][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:52.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:52.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.289][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:52.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:52.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.292][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:52.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:52.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.296][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:52.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:52.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.299][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.302][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.305][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.309][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:52.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:52.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.312][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:52.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:52.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.315][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:52.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:52.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.318][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.322][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.325][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.328][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.337][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:52.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:52.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.340][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:52.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:52.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.344][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:52.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:52.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.347][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.350][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.353][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.356][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:52.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:52.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.360][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:52.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:52.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.363][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:52.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:52.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.366][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:52.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:52.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.369][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:52.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:52.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.372][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:52.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:52.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.381][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171316324, 2-(cyclopropylamino)-6-(trifluoromethyl)benzonitrile, 2-(cyclopropylamino)-6-(trifluoromethyl)benzonitrile, 2-(cyclopropylamino)-6-(trifluoromethyl)benzonitrile, 2-(cyclopropylamino)-6-(trifluoromethyl)benzenecarbonitrile, ...].
biodb.DEBUG[2024-05-04 16:02:52.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:52.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:52.383][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:52.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:52.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:52.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:52.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:52.391][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:52.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:52.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:52.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:52.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.398][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:52.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:52.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.401][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:52.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:52.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.404][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:52.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:52.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.407][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:52.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:52.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.410][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:52.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:52.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.414][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:52.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:52.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.417][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:52.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:52.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.420][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:52.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:52.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:52.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:52.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:52.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:52.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.430][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:52.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:52.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.433][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:52.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:52.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.436][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:52.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:52.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.440][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:52.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:52.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.443][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.446][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.456][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:52.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:52.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.460][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:52.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:52.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.463][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.467][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.470][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.476][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:52.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:52.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.480][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:52.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:52.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.483][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.486][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.489][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:52.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:52.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.493][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:52.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:52.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.496][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:52.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:52.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.499][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:52.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:52.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.502][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:52.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:52.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.506][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:52.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:52.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.509][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:52.510][private$selectFields]
biodb.TRACE[2024-05-04 16:02:52.511][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:52.511][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:52.512][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:52.513][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:52.514][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:52.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.515][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.516][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:52.517][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:52.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.519][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.519][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:52.520][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:52.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.522][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.522][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:52.523][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:52.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.525][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.526][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:52.527][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:52.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.528][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.529][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:52.530][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:52.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.531][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.532][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:52.533][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:52.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.534][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.535][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:52.536][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:52.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.537][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.538][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.539][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.541][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.542][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:52.542][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:52.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.544][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.545][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.546][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.547][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.548][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.549][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.550][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.551][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:52.552][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:52.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.554][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.554][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.555][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.557][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.558][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:52.559][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:52.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.560][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.561][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:52.562][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:52.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.563][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.564][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:52.565][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:52.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.567][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.567][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:52.568][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:52.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.570][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.571][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:52.571][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:52.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.573][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.574][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:52.575][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:52.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.576][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.577][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:52.578][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:52.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.579][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.580][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:52.581][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:52.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.583][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.583][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:52.584][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:52.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.586][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.587][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:52.588][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:52.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.589][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.590][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:52.591][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:52.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.592][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.593][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.594][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.595][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.596][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:52.597][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:52.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.598][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.599][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.600][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.602][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.603][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.603][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.605][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.606][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:52.607][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:52.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.608][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.609][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.610][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.611][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.612][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:52.613][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:52.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.614][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.615][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:52.616][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:52.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.618][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.618][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:52.619][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:52.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.621][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.622][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:52.622][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:52.623][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:52.624][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:52.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.625][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.626][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:52.627][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:52.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.628][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.629][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:52.630][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:52.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.631][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.632][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:52.633][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:52.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.634][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.635][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:52.636][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:52.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.637][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.638][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:52.639][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:52.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.641][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.641][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:52.642][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:52.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.644][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.644][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:52.645][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:52.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.647][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.648][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.648][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.650][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.651][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:52.652][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:52.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.653][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.654][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.655][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.656][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.657][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.658][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.660][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.660][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:52.661][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:52.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.663][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.664][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.664][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.666][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.667][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:52.668][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:52.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.669][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.670][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:52.671][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:52.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.672][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.673][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-04 16:02:52.674][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:52.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:52.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.677][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:52.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:52.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:52.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:52.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.684][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:52.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:52.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.686][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:52.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:52.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:52.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:52.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:52.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:52.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:52.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:52.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:52.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:52.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:52.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:52.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.705][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:52.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:52.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:52.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:52.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:52.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:52.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:52.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:52.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:52.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:52.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.728][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:52.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:52.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:52.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:52.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:52.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:52.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.737][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:52.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:52.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.740][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:52.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:52.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.743][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:52.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:52.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.747][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:52.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:52.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.750][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:52.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:52.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.753][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:52.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:52.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.756][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.759][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.766][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:52.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:52.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.769][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:52.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:52.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.772][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:52.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:52.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.775][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.778][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.781][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.785][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.794][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:52.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:52.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.797][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:52.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:52.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.800][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:52.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:52.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.804][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.807][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.813][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:52.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:52.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.816][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:52.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:52.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.819][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:52.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:52.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.822][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:52.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:52.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.825][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:52.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:52.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.828][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:52.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:52.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.837][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171316323, 2-(cyclopropylamino)-4-(trifluoromethyl)benzonitrile, 2-(cyclopropylamino)-4-(trifluoromethyl)benzonitrile, 2-(cyclopropylamino)-4-(trifluoromethyl)benzonitrile, 2-(cyclopropylamino)-4-(trifluoromethyl)benzenecarbonitrile, ...].
biodb.DEBUG[2024-05-04 16:02:52.838][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:52.839][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-05-04 16:02:52.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.847][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.850][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.859][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.862][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.865][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:52.870][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:52.871][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:52.872][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:52.876][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:52.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:52.877][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:52.878][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:52.884][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:52.886][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:02:52.887][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-05-04 16:02:52.888][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:02:52.889][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-05-04 16:02:52.890][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:52.892][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:52.892][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:52.893][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:52.898][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:52.899][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:52.899][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:52.900][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:52.901][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:52.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:52.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.904][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:52.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:52.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.907][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:52.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:52.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:52.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:52.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:52.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:52.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.916][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:52.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:52.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:52.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:52.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:52.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:52.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.925][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:52.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:52.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:52.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:52.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.932][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:52.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:52.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.935][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:52.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:52.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.938][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:52.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:52.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.941][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:52.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:52.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.944][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:52.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:52.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.947][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:52.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:52.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.950][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:52.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.956][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:52.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:52.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.959][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:52.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:52.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.965][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:52.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.968][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.979][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:52.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.982][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:52.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:52.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.986][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:52.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:52.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.989][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.992][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:52.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.995][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:52.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:52.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:52.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:52.998][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:52.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.001][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.004][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.007][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:53.008][private$selectFields]
biodb.TRACE[2024-05-04 16:02:53.009][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:53.010][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:53.011][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:53.011][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:53.012][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:53.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.014][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.014][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.015][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.017][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.018][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.018][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.020][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.021][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.022][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.023][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.024][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.025][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.026][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.027][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.028][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.029][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.030][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:53.031][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:53.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.032][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.033][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:53.034][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:53.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.035][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.036][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.037][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.038][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.039][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:53.040][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:53.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.041][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.042][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.043][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.044][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.045][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.046][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.047][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.048][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:53.049][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:53.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.050][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.051][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.052][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.053][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.054][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.055][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.056][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.057][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.057][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.059][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.060][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:53.060][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:53.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.062][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.063][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.063][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.065][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.066][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.066][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.068][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.069][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.069][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.071][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.072][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.072][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.074][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.074][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.075][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.077][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.077][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:53.078][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:53.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.080][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.081][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:53.081][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:53.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.083][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.084][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.085][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.086][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.087][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:53.088][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:53.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.089][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.090][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.091][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.092][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.093][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.094][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.096][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.096][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:53.097][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:53.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.099][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.099][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.100][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.102][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.102][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.103][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.105][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.105][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.106][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.107][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.108][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:53.109][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:53.110][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:53.110][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:53.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.112][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.113][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.113][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.115][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.116][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.116][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.118][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.119][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.119][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.121][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.122][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.123][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.124][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.125][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.125][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.127][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.128][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:53.128][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:53.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.130][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.131][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:53.131][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:53.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.133][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.134][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.134][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.136][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.137][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:53.137][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:53.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.139][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.139][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.140][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.142][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.143][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.143][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.144][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.145][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.145][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:53.146][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:53.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.148][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.148][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.149][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.151][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.151][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.152][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.154][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.155][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.155][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.157][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.158][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-04 16:02:53.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:53.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:53.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:53.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:53.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:53.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:53.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.174][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.189][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.196][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.199][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.214][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:53.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:53.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.217][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:53.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:53.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.220][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:53.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:53.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:53.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:53.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:53.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:53.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.236][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:53.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:53.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.239][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.242][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.245][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.248][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:53.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:53.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.251][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:53.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:53.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.255][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:53.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:53.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.258][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.261][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.264][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.267][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.270][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.274][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.277][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:53.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:53.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.280][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:53.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:53.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.283][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:53.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:53.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.287][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.290][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.293][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.296][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.300][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.303][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.306][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.309][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.312][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.321][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171364948, (2S)-2-amino-6-guanidino-6-hydroxy-hexanoic acid, (2S)-2-amino-6-(diaminomethylideneamino)-6-hydroxyhexanoic acid, (2S)-2-amino-6-(diaminomethylideneamino)-6-hydroxyhexanoic acid, (2S)-2-azanyl-6-[bis(azanyl)methylideneamino]-6-oxidanyl-hexanoic acid, ...].
biodb.DEBUG[2024-05-04 16:02:53.322][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:53.323][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:53.324][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:53.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:53.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:53.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:53.330][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:53.331][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:53.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:53.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:53.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:53.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.338][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.341][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.344][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.347][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.356][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.368][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:53.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:53.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.371][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:53.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:53.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.374][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:53.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:53.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.377][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:53.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:53.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.380][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.386][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:53.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:53.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.389][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:53.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:53.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.399][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.402][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.405][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:53.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:53.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.408][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:53.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:53.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.411][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.414][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.417][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.420][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.423][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.426][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.429][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:53.430][private$selectFields]
biodb.TRACE[2024-05-04 16:02:53.430][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:53.431][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:53.432][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:53.433][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:53.433][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:53.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.435][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.436][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.436][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.438][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.438][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.439][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.441][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.441][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.442][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.444][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.444][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.445][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.446][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.447][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.448][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.449][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.450][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:53.451][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:53.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.453][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.453][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:53.454][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:53.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.455][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.456][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.457][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.458][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.459][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:53.460][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:53.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.461][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.462][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.463][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.464][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.465][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.466][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.467][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.468][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:53.469][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:53.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.470][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.471][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.471][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.473][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.474][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.480][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.482][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.483][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.485][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.486][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.487][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:53.488][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:53.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.489][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.490][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.491][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.491][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.492][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.493][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.494][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.495][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.496][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.497][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.498][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.499][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.500][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.501][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.502][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.503][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.504][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.505][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:53.506][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:53.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.507][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.508][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:53.509][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:53.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.510][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.511][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.512][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.513][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.514][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:53.515][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:53.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.516][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.517][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.517][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.519][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.520][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.520][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.521][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.522][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.523][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:53.523][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:53.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.525][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.525][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.526][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.528][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.528][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.529][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.531][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.531][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.532][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.533][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.534][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:53.535][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:53.536][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:53.537][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:53.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.538][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.539][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.540][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.541][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.542][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.543][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.544][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.545][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.546][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.547][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.548][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.549][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.550][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.551][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.552][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.553][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.554][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:53.554][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:53.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.556][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.557][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:53.557][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:53.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.559][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.559][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.560][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.562][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.562][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:53.563][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:53.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.564][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.565][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.566][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.567][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.568][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.569][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.570][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.571][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:53.572][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:53.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.573][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.574][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.575][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.576][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.577][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.578][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.578][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.579][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.580][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.581][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.582][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.583][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-04 16:02:53.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:53.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:53.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:53.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:53.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.590][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:53.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:53.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.593][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.596][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.625][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.631][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.634][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.637][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:53.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:53.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.640][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:53.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:53.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.643][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:53.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:53.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.646][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:53.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:53.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.649][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:53.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:53.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.652][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:53.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:53.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.655][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.658][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.661][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.664][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:53.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:53.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.667][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:53.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:53.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.670][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:53.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:53.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.673][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.676][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.679][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.682][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.688][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.692][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:53.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:53.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.694][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:53.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:53.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.697][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:53.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:53.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.700][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.703][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.706][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.709][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.712][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.715][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.718][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.728][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.732][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.741][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171338202, 4-methyl-3-phenyl-hex-4-enoic acid, 4-methyl-3-phenyl-4-hexenoic acid, 4-methyl-3-phenylhex-4-enoic acid, 4-methyl-3-phenyl-hex-4-enoic acid, ...].
biodb.DEBUG[2024-05-04 16:02:53.742][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:53.743][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:53.743][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:53.748][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:53.749][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:53.750][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:53.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:53.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:53.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:53.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:53.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:53.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.771][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.777][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.780][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.789][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:53.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:53.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.792][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:53.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:53.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.795][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:53.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:53.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.798][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:53.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:53.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.808][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:53.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:53.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.811][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:53.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:53.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.814][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.823][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.827][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:53.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:53.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.830][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:53.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:53.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.833][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.836][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.839][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.842][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.846][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.849][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.852][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:53.853][private$selectFields]
biodb.TRACE[2024-05-04 16:02:53.854][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:53.854][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:53.855][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:53.856][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:53.857][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:53.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.858][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.859][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.860][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.861][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.862][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.863][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.864][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.865][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.866][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.867][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.868][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.869][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.871][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.871][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.872][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.874][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.874][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:53.875][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:53.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.877][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.877][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:53.878][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:53.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.880][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.880][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.881][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.883][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.883][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:53.884][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:53.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.886][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.887][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.887][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.889][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.890][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.890][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.892][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.893][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:53.893][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:53.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.895][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.896][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.896][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.898][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.899][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.900][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.901][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.902][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.903][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.904][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.905][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:53.906][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:53.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.908][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.908][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.909][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.910][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.911][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.912][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.913][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.914][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.915][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.917][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.917][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.918][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.920][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.920][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.921][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.923][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.923][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:53.924][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:53.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.926][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.926][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:53.927][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:53.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.928][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.929][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.930][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.931][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.932][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:53.933][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:53.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.934][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.935][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.936][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.937][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.938][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.939][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.941][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.941][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:53.942][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:53.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.944][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.944][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.945][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:53.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.947][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.947][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.948][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:53.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.950][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.950][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.951][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:53.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.953][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.953][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:53.954][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:53.955][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:53.956][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:53.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.957][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.958][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.958][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:53.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.960][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.961][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.961][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:53.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.963][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.963][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.964][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:53.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.966][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.967][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.967][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:53.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.969][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.969][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.970][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:53.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.972][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.972][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:53.973][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:53.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.980][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.981][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:53.982][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:53.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.984][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.985][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.986][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:53.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.988][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.988][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:53.989][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:53.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.990][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.991][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.992][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:53.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.993][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.994][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.995][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:53.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.996][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:53.997][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:53.998][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:53.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:53.999][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.000][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:54.001][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:54.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.002][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.003][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:54.004][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:54.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.005][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.006][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:54.007][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:54.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.008][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.009][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-04 16:02:54.010][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:54.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:54.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:54.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:54.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.016][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:54.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:54.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.019][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.022][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.028][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.031][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.034][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.037][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.042][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.046][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.051][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.061][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.064][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:54.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:54.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.067][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:54.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:54.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.070][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:54.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:54.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.073][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:54.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:54.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.076][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:54.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:54.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.079][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:54.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:54.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.082][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.085][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.091][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:54.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:54.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.094][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:54.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:54.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.097][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:54.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:54.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.100][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.103][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.106][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.109][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.112][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.115][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.118][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:54.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:54.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.121][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:54.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:54.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.124][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:54.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:54.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:54.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:54.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.131][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:54.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:54.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.134][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:54.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:54.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.137][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:54.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:54.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.140][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:54.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:54.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.143][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:54.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:54.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.146][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:54.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:54.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.149][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:54.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:54.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.151][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:54.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:54.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.160][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171326566, 4-(3,6-dihydro-2H-pyridin-1-ylmethyl)-1-methyl-pyridin-2-one, 4-(3,6-dihydro-2H-pyridin-1-ylmethyl)-1-methyl-2-pyridinone, 4-(3,6-dihydro-2H-pyridin-1-ylmethyl)-1-methylpyridin-2-one, 4-(3,6-dihydro-2H-pyridin-1-ylmethyl)-1-methyl-pyridin-2-one, ...].
biodb.DEBUG[2024-05-04 16:02:54.161][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:54.162][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:54.164][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:54.165][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:54.165][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:54.170][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:54.171][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:54.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:54.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:54.177][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:54.179][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:02:54.180][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-05-04 16:02:54.181][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:02:54.182][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-05-04 16:02:54.184][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:54.185][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:54.185][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:54.186][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:54.191][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:54.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:54.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:54.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:54.194][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:54.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:54.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:54.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:54.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.203][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.209][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.218][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.221][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.232][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.235][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.238][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:54.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:54.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.241][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:54.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:54.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.245][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:54.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:54.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.248][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:54.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:54.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.251][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.257][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:54.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:54.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.260][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:54.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:54.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.266][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.275][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:54.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:54.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.278][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:54.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:54.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:54.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:54.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.284][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:54.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:54.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.287][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:54.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:54.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.291][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:54.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:54.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.294][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:54.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:54.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.297][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:54.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:54.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.300][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:54.300][private$selectFields]
biodb.TRACE[2024-05-04 16:02:54.301][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:54.302][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:54.303][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:54.303][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:54.304][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:54.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.305][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.306][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.307][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.308][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.309][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.310][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.311][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.311][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.312][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.313][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.314][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.315][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.316][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.317][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.318][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.319][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.321][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.321][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:54.322][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:54.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.323][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.324][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:54.325][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:54.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.326][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.327][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.328][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.329][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.329][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.330][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:54.331][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:54.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.332][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.333][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.334][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.335][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.336][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.337][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.338][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.339][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:54.340][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:54.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.341][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.342][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:54.343][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:54.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.344][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.345][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:54.346][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:54.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.347][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.348][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:54.349][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:54.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.350][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.351][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:54.352][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:54.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.353][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.354][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.355][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.356][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.357][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.358][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.359][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.360][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.361][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.363][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.363][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.364][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.366][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.366][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.367][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.369][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.370][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:54.370][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:54.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.372][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.373][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:54.373][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:54.374][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.375][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.376][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.376][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.378][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.379][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:54.380][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:54.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.381][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.382][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.382][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.384][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.385][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.385][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.387][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.388][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:54.388][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:54.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.390][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.391][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:54.391][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:54.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.393][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.394][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:54.394][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:54.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.396][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.397][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:54.397][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:54.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.399][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.400][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:54.401][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:54.401][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:54.402][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:54.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.404][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.404][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.405][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.406][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.407][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.408][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.409][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.410][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.411][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.412][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.413][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.414][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.416][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.416][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.417][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.419][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.419][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:54.420][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:54.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.422][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.422][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:54.423][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:54.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.425][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.426][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.426][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.427][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.428][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.428][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:54.429][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:54.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.431][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.432][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.433][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.434][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.435][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.436][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.437][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.438][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:54.439][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:54.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.440][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.441][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:54.442][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:54.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.443][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.444][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:54.445][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:54.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.447][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.447][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:54.448][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:54.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.450][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.451][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-04 16:02:54.452][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:54.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:54.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:54.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:54.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:54.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:54.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.461][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.468][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.471][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.491][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.494][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.497][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.503][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.510][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.513][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.517][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:54.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:54.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.520][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:54.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:54.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.523][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:54.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:54.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.526][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:54.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:54.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.530][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:54.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:54.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.533][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:54.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:54.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.536][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.540][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.543][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.546][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:54.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:54.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.549][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:54.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:54.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.552][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:54.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:54.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.558][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.564][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.567][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.574][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:54.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:54.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.577][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:54.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:54.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.580][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:54.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:54.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.584][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:54.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:54.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.587][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:54.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:54.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.590][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:54.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:54.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.593][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:54.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:54.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.596][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:54.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:54.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.599][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:54.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:54.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.602][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:54.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:54.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.605][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:54.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:54.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.608][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:54.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:54.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.617][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171316040, 3-(5-chloro-3-cyclopropyl-1-methyl-pyrazol-4-yl)prop-2-enoic acid, 3-(5-chloro-3-cyclopropyl-1-methyl-4-pyrazolyl)-2-propenoic acid, 3-(5-chloro-3-cyclopropyl-1-methylpyrazol-4-yl)prop-2-enoic acid, 3-(5-chloranyl-3-cyclopropyl-1-methyl-pyrazol-4-yl)prop-2-enoic acid, ...].
biodb.DEBUG[2024-05-04 16:02:54.618][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:54.618][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:54.619][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:54.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:54.624][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:54.625][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:54.626][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:54.627][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:54.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:54.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:54.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:54.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.645][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.648][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.651][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.654][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.658][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.664][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:54.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:54.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.667][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:54.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:54.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.670][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:54.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:54.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:54.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:54.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.683][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:54.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:54.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.686][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:54.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:54.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.689][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.692][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.699][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.702][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:54.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:54.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.705][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:54.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:54.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.708][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:54.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:54.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:54.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:54.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.714][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:54.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:54.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.717][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:54.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:54.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.720][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:54.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:54.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.724][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:54.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:54.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.727][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:54.728][private$selectFields]
biodb.TRACE[2024-05-04 16:02:54.729][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:54.729][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:54.730][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:54.731][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:54.732][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:54.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.743][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.744][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.745][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.747][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.748][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.749][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.751][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.752][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.752][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.754][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.755][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.756][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.757][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.758][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.759][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.760][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.761][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:54.762][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:54.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.763][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.764][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:54.765][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:54.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.767][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.767][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.768][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.770][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.771][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:54.771][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:54.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.773][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.774][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.774][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.776][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.777][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.778][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.779][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.780][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:54.781][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:54.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.782][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.783][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:54.784][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:54.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.785][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.786][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:54.787][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:54.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.788][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.789][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:54.790][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:54.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.792][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.792][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:54.793][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:54.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.795][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.795][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.796][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.798][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.799][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.800][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.801][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.802][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.803][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.804][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.805][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.806][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.807][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.808][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.809][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.810][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.811][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:54.812][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:54.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.813][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.814][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:54.815][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:54.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.817][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.817][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.818][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.820][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.821][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:54.821][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:54.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.823][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.824][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.825][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.826][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.827][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.828][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.829][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.830][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:54.831][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:54.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.832][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.833][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:54.834][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:54.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.835][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.836][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:54.837][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:54.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.839][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.839][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:54.840][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:54.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.842][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.842][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-05-04 16:02:54.843][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-05-04 16:02:54.844][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:54.845][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:54.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.846][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.847][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.848][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.849][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.850][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.851][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.852][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.853][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.854][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.856][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.856][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.857][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.858][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.859][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.859][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.860][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.862][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.863][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:54.863][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:54.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.865][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.866][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:54.866][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:54.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.868][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.869][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.869][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.871][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.872][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.872][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.874][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.875][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.875][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.877][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.878][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:54.879][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:54.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.880][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.881][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:54.881][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:54.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.883][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.884][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:54.884][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:54.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.886][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.887][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:54.887][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:54.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.889][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.890][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-04 16:02:54.891][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:54.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:54.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:54.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:54.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.897][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:54.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:54.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.900][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.903][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:54.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.913][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.916][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:54.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.926][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:54.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.932][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.935][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:54.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.938][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.941][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.944][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:54.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.948][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:54.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:54.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.951][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:54.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:54.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.954][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:54.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:54.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.957][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:54.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:54.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.960][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:54.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:54.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.963][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:54.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:54.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.967][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.970][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.973][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:54.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.976][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.979][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.982][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:54.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.988][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:54.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:54.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:54.995][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:54.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:55.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.005][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:55.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:55.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.009][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:55.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:55.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.012][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.015][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.018][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.021][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.024][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.027][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.031][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.034][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.037][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.046][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171260713, (3R)-3-amino-3-(1,3-benzodioxol-5-yl)propanenitrile;hydrochloride, (3R)-3-amino-3-(1,3-benzodioxol-5-yl)propanenitrile;hydrochloride, (3R)-3-amino-3-(1,3-benzodioxol-5-yl)propanenitrile;hydrochloride, (3R)-3-azanyl-3-(1,3-benzodioxol-5-yl)propanenitrile;hydrochloride, ...].
biodb.DEBUG[2024-05-04 16:02:55.047][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:55.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:55.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:55.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:55.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:55.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:55.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:55.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:55.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:55.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:55.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:55.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.062][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.065][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.081][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.084][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.090][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.093][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:55.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:55.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.096][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:55.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:55.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.100][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:55.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:55.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.102][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:55.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:55.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:55.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:55.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.108][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:55.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:55.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.112][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:55.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:55.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.114][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:55.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:55.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:55.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:55.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:55.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:55.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.124][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:55.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:55.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.126][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:55.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:55.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.129][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:55.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:55.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.133][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:55.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:55.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.136][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.139][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.142][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.145][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.148][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.151][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.154][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:55.155][private$selectFields]
biodb.TRACE[2024-05-04 16:02:55.155][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:55.156][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:55.157][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:55.157][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:55.158][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:55.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.160][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.160][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.161][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.163][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.163][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.164][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.166][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.166][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.167][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.168][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.169][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.170][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.172][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.172][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.173][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.175][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.175][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:55.176][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:55.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.177][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.178][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:55.179][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:55.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.180][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.181][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:55.182][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:55.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.183][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.184][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:55.185][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:55.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.186][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.187][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:55.188][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:55.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.190][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.191][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:55.191][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:55.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.193][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.194][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:55.194][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:55.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.196][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.197][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.198][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.199][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.200][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.201][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.202][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.203][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.204][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.205][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.206][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:55.207][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:55.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.208][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.209][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.210][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.211][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.212][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.213][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.214][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.215][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.216][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.217][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.218][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.219][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.220][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.221][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.222][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.223][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.224][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:55.225][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:55.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.226][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.227][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:55.228][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:55.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.230][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.230][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:55.231][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:55.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.232][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.233][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:55.234][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:55.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.235][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.236][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:55.237][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:55.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.238][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.239][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:55.240][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:55.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.241][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.242][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:55.243][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:55.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.244][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.245][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.246][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.248][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.248][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.249][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.257][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.258][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.259][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.261][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.262][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-05-04 16:02:55.263][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-05-04 16:02:55.264][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:55.265][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:55.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.266][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.267][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.268][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.269][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.270][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.271][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.272][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.273][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.274][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.275][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.276][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.277][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.278][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.279][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.280][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.281][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.282][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:55.283][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:55.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.284][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.285][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:55.286][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:55.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.288][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.288][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:55.289][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:55.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.290][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.291][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:55.292][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:55.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.294][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.294][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:55.295][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:55.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.297][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.297][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:55.298][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:55.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.300][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.301][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.301][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.302][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.303][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.304][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.304][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.306][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.307][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.307][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.309][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.310][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-04 16:02:55.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:55.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:55.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:55.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:55.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.317][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:55.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:55.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.321][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.324][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.327][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.336][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.339][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.343][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.346][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.349][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.358][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.361][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.367][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:55.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:55.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.370][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:55.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:55.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.373][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:55.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:55.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.376][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:55.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:55.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:55.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:55.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.383][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:55.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:55.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.386][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:55.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:55.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.389][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:55.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:55.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.392][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:55.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:55.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:55.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:55.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.398][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:55.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:55.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.401][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:55.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:55.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.405][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:55.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:55.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.408][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:55.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:55.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:55.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:55.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.414][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:55.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:55.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.417][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:55.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:55.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.420][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:55.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:55.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.423][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.426][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.429][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.432][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.436][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.439][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.442][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.445][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.448][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.457][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171260621, (3R)-3-amino-3-(1,3-benzodioxol-4-yl)propanenitrile;hydrochloride, (3R)-3-amino-3-(1,3-benzodioxol-4-yl)propanenitrile;hydrochloride, (3R)-3-amino-3-(1,3-benzodioxol-4-yl)propanenitrile;hydrochloride, (3R)-3-azanyl-3-(1,3-benzodioxol-4-yl)propanenitrile;hydrochloride, ...].
biodb.DEBUG[2024-05-04 16:02:55.458][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:55.459][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:55.466][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:55.467][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:55.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:55.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:55.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:55.473][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:55.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:55.479][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:55.482][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:02:55.483][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-05-04 16:02:55.484][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:02:55.485][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-05-04 16:02:55.486][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:55.487][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:55.488][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:55.489][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:55.493][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:55.494][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:55.495][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:55.496][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:55.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:55.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:55.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:55.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:55.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.503][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.544][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:55.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:55.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.547][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:55.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:55.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.550][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:55.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:55.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.553][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:55.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:55.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:55.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:55.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.559][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:55.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:55.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.562][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:55.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:55.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.565][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:55.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:55.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.568][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:55.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:55.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.571][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:55.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:55.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.575][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:55.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:55.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.578][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:55.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:55.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.581][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:55.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:55.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.584][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:55.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:55.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.587][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.590][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.594][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.597][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.600][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.603][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.606][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:55.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:55.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.609][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:55.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:55.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.612][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:55.613][private$selectFields]
biodb.TRACE[2024-05-04 16:02:55.614][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:55.614][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:55.615][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:55.616][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:55.617][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:55.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.618][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.619][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.620][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.621][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.622][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.623][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.624][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.625][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.626][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.628][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.628][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.629][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.631][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.631][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.632][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.634][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.634][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:55.635][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:55.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.637][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.638][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:55.638][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:55.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.640][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.641][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:55.641][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:55.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.643][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.644][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:55.644][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:55.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.646][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.647][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:55.648][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:55.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.649][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.650][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:55.651][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:55.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.652][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.653][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:55.654][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:55.655][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.655][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.656][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.657][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.658][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.659][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.660][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.661][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.662][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.663][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.664][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.665][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:55.666][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:55.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.667][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.668][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:55.669][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:55.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.670][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.671][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.672][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.673][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.674][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.675][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.676][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.676][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.677][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.678][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.679][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.680][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.681][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.682][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.683][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.684][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.685][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.686][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:55.687][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:55.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.688][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.689][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:55.690][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:55.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.691][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.692][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:55.693][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:55.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.694][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.695][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:55.696][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:55.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.697][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.698][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:55.699][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:55.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.700][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.701][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:55.702][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:55.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.703][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.704][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:55.705][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:55.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.706][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.707][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.708][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.710][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.710][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.711][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.713][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.713][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.714][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.716][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.717][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:55.718][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:55.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.719][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.720][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:55.721][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:55.721][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:55.722][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:55.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.724][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.724][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.725][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.727][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.727][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.728][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.730][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.730][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.731][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.733][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.733][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.734][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.736][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.736][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.737][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.739][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.740][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:55.740][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:55.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.742][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.742][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:55.743][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:55.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.745][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.745][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:55.746][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:55.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.748][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.748][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:55.749][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:55.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.751][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.752][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:55.752][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:55.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.754][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.754][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:55.755][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:55.756][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.757][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.757][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:55.758][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:55.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.760][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.760][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.761][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.763][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.763][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.764][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.772][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.773][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.774][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.776][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.777][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-04 16:02:55.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:55.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:55.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:55.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:55.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:55.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:55.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.787][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.791][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.797][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.800][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.803][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.809][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.816][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.825][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.835][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:55.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:55.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.838][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:55.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:55.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.841][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:55.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:55.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.844][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:55.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:55.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.847][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:55.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:55.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.851][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:55.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:55.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.854][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:55.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:55.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.857][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:55.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:55.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:55.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:55.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.863][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:55.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:55.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.866][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:55.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:55.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.869][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:55.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:55.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:55.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:55.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:55.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:55.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.878][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:55.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:55.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.882][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:55.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:55.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:55.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:55.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:55.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:55.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.891][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:55.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:55.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.894][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:55.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:55.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.897][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:55.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:55.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.901][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.904][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.907][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:55.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.910][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.913][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.916][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:55.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.919][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.922][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.926][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:55.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.934][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171364948, (2S)-2-amino-6-guanidino-6-hydroxy-hexanoic acid, (2S)-2-amino-6-(diaminomethylideneamino)-6-hydroxyhexanoic acid, (2S)-2-amino-6-(diaminomethylideneamino)-6-hydroxyhexanoic acid, (2S)-2-azanyl-6-[bis(azanyl)methylideneamino]-6-oxidanyl-hexanoic acid, ...].
biodb.DEBUG[2024-05-04 16:02:55.935][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:55.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:55.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:55.941][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:55.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:55.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:55.943][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:55.944][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:55.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:55.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:55.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:55.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.950][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.954][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:55.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.957][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.960][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:55.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.966][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:55.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.969][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:55.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.975][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:55.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:55.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:55.981][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:56.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:56.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.020][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:56.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:56.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.023][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:56.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:56.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:56.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:56.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.029][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.032][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.035][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:56.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:56.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.038][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:56.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:56.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.041][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.044][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.047][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.050][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.053][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:56.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:56.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.063][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:56.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:56.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.071][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.074][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.078][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.081][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.085][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.088][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:56.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:56.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.091][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:56.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:56.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.095][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:56.095][private$selectFields]
biodb.TRACE[2024-05-04 16:02:56.096][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:56.097][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:56.098][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:56.098][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:56.099][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:56.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.101][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.102][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:56.102][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:56.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.104][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.104][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:56.105][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:56.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.107][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.108][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:56.108][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:56.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.110][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.111][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:56.112][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:56.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.113][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.114][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:56.115][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:56.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.116][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.117][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:56.118][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:56.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.119][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.120][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:56.121][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:56.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.123][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.123][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.124][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.126][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.127][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:56.128][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:56.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.129][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.130][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.131][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.131][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.132][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.133][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.134][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.135][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.136][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:56.137][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:56.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.138][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.139][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.140][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.141][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.142][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.143][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.144][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.145][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.146][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.147][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.148][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:56.149][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:56.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.150][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.151][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:56.152][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:56.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.153][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.154][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:56.155][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:56.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.156][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.157][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:56.158][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:56.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.159][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.160][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:56.161][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:56.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.162][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.163][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:56.164][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:56.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.165][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.166][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:56.167][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:56.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.168][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.169][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:56.170][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:56.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.171][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.172][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:56.173][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:56.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.174][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.175][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.176][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.178][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.178][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:56.179][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:56.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.181][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.181][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.182][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.184][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.184][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.185][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.187][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.188][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:56.188][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:56.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.190][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.191][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.191][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.193][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.194][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.195][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.196][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.197][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.198][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.199][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.200][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:56.201][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:56.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.202][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.203][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:56.204][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:56.204][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:56.205][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:56.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.207][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.207][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:56.208][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:56.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.210][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.210][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:56.211][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:56.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.213][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.213][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:56.214][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:56.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.216][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.217][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:56.217][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:56.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.219][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.219][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:56.220][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:56.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.222][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.222][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:56.223][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:56.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.225][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.225][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:56.226][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:56.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.228][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.228][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.229][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.231][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.232][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:56.232][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:56.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.234][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.234][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.235][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.237][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.237][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.238][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.240][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.241][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:56.241][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:56.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.243][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.244][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.245][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.246][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.247][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.248][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.249][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.250][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.251][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.252][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.253][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-04 16:02:56.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:56.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:56.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:56.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:56.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:56.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:56.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:56.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:56.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.266][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:56.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:56.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:56.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:56.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.273][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:56.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:56.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.276][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:56.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:56.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:56.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:56.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.282][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:56.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:56.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:56.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:56.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:56.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:56.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.292][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:56.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:56.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.295][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:56.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:56.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:56.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:56.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.301][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:56.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:56.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.304][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:56.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:56.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.307][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:56.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:56.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.310][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:56.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:56.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.313][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:56.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:56.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.325][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:56.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:56.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.329][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:56.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:56.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.332][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:56.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:56.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.335][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:56.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:56.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.338][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.348][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:56.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:56.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.351][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:56.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:56.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.354][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:56.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:56.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.358][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.361][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.364][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.367][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.370][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.373][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.377][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:56.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:56.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.380][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:56.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:56.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.383][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:56.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:56.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.386][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.389][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.392][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.395][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.398][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.401][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.405][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.408][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.411][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.420][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171338202, 4-methyl-3-phenyl-hex-4-enoic acid, 4-methyl-3-phenyl-4-hexenoic acid, 4-methyl-3-phenylhex-4-enoic acid, 4-methyl-3-phenyl-hex-4-enoic acid, ...].
biodb.DEBUG[2024-05-04 16:02:56.421][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:56.422][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:56.423][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:56.427][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:56.428][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:56.429][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:56.429][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:56.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:56.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:56.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:56.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:56.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:56.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:56.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:56.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:56.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:56.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:56.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.446][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:56.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:56.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.449][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:56.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:56.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:56.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:56.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:56.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:56.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.458][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:56.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:56.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.461][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:56.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:56.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.464][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:56.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:56.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.467][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:56.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:56.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.470][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:56.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:56.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.473][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:56.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:56.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.476][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:56.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:56.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.479][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.485][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:56.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:56.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.488][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:56.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:56.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.491][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.494][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.500][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.503][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:56.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:56.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.506][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:56.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:56.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.509][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.512][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.515][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.518][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.521][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.524][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.527][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:56.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:56.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.530][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:56.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:56.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.533][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:56.534][private$selectFields]
biodb.TRACE[2024-05-04 16:02:56.534][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:56.535][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:56.536][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:56.536][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:56.537][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:56.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.539][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.539][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:56.540][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:56.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.541][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.542][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:56.543][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:56.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.544][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.545][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:56.546][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:56.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.547][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.548][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:56.549][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:56.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.550][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.551][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:56.552][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:56.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.553][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.554][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:56.555][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:56.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.556][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.557][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:56.558][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:56.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.559][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.560][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.561][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.562][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.563][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:56.564][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:56.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.565][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.566][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.567][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.576][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.577][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.578][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.580][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.581][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:56.582][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:56.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.583][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.584][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.585][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.586][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.587][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.588][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.589][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.590][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.591][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.592][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.593][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:56.594][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:56.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.595][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.596][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:56.597][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:56.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.598][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.599][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:56.600][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:56.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.601][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.602][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:56.603][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:56.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.604][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.605][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:56.606][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:56.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.607][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.608][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:56.609][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:56.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.610][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.611][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:56.612][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:56.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.613][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.614][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:56.615][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:56.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.616][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.617][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:56.618][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:56.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.619][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.620][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.621][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.622][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.623][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:56.624][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:56.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.626][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.626][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.627][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.629][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.629][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.630][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.632][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.632][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:56.633][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:56.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.635][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.635][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.636][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.638][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.638][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.639][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.641][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.641][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.642][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.644][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.644][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:56.645][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:56.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.647][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.648][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:56.648][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:56.649][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:56.650][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:56.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.651][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.652][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:56.653][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:56.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.654][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.655][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:56.656][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:56.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.657][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.658][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:56.659][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:56.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.660][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.661][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:56.662][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:56.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.663][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.664][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:56.665][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:56.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.666][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.667][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:56.668][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:56.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.670][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.670][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:56.671][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:56.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.673][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.673][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.674][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.676][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.676][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:56.677][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:56.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.679][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.679][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.680][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.681][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.682][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.683][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.685][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.685][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:56.686][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:56.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.688][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.688][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.689][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.691][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.691][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.692][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.694][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.694][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.695][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.697][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.697][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-04 16:02:56.698][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:56.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:56.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.701][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:56.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:56.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.704][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:56.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:56.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.708][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:56.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:56.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:56.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:56.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:56.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:56.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:56.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:56.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:56.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:56.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:56.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:56.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:56.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:56.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:56.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:56.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.732][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:56.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:56.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.735][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:56.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:56.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.738][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:56.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:56.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.741][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:56.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:56.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:56.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:56.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.747][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:56.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:56.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.750][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:56.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:56.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.753][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:56.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:56.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.756][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:56.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:56.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.759][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:56.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:56.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.762][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:56.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:56.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:56.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:56.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.768][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:56.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:56.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.772][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.778][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.781][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:56.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:56.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.784][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:56.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:56.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.787][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:56.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:56.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.790][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.793][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.796][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.799][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.802][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.806][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.809][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:56.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:56.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.812][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:56.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:56.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.815][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:56.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:56.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.818][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.829][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.833][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.836][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.840][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.842][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.846][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.849][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.852][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.861][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171326566, 4-(3,6-dihydro-2H-pyridin-1-ylmethyl)-1-methyl-pyridin-2-one, 4-(3,6-dihydro-2H-pyridin-1-ylmethyl)-1-methyl-2-pyridinone, 4-(3,6-dihydro-2H-pyridin-1-ylmethyl)-1-methylpyridin-2-one, 4-(3,6-dihydro-2H-pyridin-1-ylmethyl)-1-methyl-pyridin-2-one, ...].
biodb.DEBUG[2024-05-04 16:02:56.862][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:56.863][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:56.865][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:56.866][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:56.867][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:56.871][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:56.872][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:56.873][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:56.874][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:56.879][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-05-04 16:02:56.882][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:02:56.883][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-05-04 16:02:56.884][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:02:56.885][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-05-04 16:02:56.886][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:56.887][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:56.888][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:56.889][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:56.893][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:56.894][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:56.895][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:56.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:56.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:56.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:56.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.899][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:56.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:56.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.902][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:56.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:56.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:56.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:56.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:56.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:56.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.912][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:56.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:56.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.915][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:56.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:56.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.918][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:56.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:56.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:56.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:56.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:56.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:56.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.927][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:56.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:56.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:56.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:56.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.933][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:56.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:56.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.936][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:56.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:56.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.938][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.939][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:56.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:56.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.942][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:56.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:56.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.945][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.947][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.948][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:56.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.951][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:56.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:56.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.954][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:56.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:56.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.960][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:56.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.966][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:56.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.969][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:56.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:56.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.972][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:56.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:56.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.975][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.978][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:56.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.981][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.984][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:56.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.987][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.990][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:56.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.993][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:56.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:56.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.996][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:56.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:56.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:56.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:56.999][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:56.999][private$selectFields]
biodb.TRACE[2024-05-04 16:02:57.000][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:57.001][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:57.001][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:57.002][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:57.003][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:57.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.004][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.005][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.006][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.008][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.008][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.009][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.010][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.011][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.012][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.013][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.014][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.015][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.016][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.017][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.017][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.019][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.020][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:57.020][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:57.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.022][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.022][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:57.023][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:57.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.025][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.026][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.027][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.028][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.029][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:57.029][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:57.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.031][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.032][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.032][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.034][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.035][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.035][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.037][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.037][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:57.038][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:57.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.040][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.040][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.041][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.043][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.044][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.044][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.046][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.046][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.047][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.049][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.049][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:57.050][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:57.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.052][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.052][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:57.053][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:57.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.055][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.055][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.056][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.057][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.058][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.059][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.060][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.061][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.062][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.063][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.064][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.065][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.066][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.067][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.068][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.069][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.070][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:57.071][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:57.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.080][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.081][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:57.082][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:57.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.084][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.085][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.086][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.088][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.089][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:57.090][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:57.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.091][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.092][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.093][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.094][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.095][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.096][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.097][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.098][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:57.099][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:57.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.100][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.101][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.102][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.103][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.104][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.105][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.107][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.107][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.108][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.110][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.110][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:57.111][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:57.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.113][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.113][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:57.114][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:57.115][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:57.116][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:57.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.117][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.118][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.119][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.120][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.121][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.122][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.123][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.124][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.125][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.126][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.127][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.128][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.129][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.130][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.131][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.132][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.133][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:57.134][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:57.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.135][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.136][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:57.137][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:57.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.138][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.139][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.140][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.141][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.142][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:57.143][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:57.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.144][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.145][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.146][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.147][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.148][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.148][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.150][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.151][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:57.151][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:57.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.153][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.153][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.154][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.155][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.156][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.157][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.159][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.159][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.160][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.162][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.162][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-04 16:02:57.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:57.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:57.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:57.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:57.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:57.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:57.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.173][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.179][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.189][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.198][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.220][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:57.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:57.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.223][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:57.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:57.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.226][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:57.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:57.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.229][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:57.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:57.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.232][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:57.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:57.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.235][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:57.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:57.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.241][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.247][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:57.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:57.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.250][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:57.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:57.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.253][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:57.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:57.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.257][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.260][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.263][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.266][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.269][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.272][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.275][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:57.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:57.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.278][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:57.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:57.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.281][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:57.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:57.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.285][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.288][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.290][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.294][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.297][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.300][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.303][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.306][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.309][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.318][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171316040, 3-(5-chloro-3-cyclopropyl-1-methyl-pyrazol-4-yl)prop-2-enoic acid, 3-(5-chloro-3-cyclopropyl-1-methyl-4-pyrazolyl)-2-propenoic acid, 3-(5-chloro-3-cyclopropyl-1-methylpyrazol-4-yl)prop-2-enoic acid, 3-(5-chloranyl-3-cyclopropyl-1-methyl-pyrazol-4-yl)prop-2-enoic acid, ...].
biodb.DEBUG[2024-05-04 16:02:57.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:57.319][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:57.320][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:57.324][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:57.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:57.333][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:57.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:57.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:57.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:57.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:57.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:57.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.343][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.346][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.349][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.352][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.358][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.361][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.367][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.373][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:57.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:57.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.376][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:57.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:57.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.379][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:57.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:57.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.382][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:57.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:57.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.388][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.391][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:57.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:57.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.394][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:57.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:57.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.400][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.403][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.409][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:57.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:57.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.412][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:57.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:57.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.415][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.418][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.421][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.424][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.427][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.430][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.433][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:57.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:57.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.436][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:57.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:57.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.440][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:57.440][private$selectFields]
biodb.TRACE[2024-05-04 16:02:57.441][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:57.442][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:57.443][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:57.443][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:57.444][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:57.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.446][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.446][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.447][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.448][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.449][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.450][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.452][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.452][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.453][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.455][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.456][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.456][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.458][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.459][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.459][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.461][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.462][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:57.463][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:57.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.464][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.465][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:57.466][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:57.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.467][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.468][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.469][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.470][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.471][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:57.472][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:57.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.473][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.474][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.475][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.476][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.477][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.478][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.479][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.480][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:57.481][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:57.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.482][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.483][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.483][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.485][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.486][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.486][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.488][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.489][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.489][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.491][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.492][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:57.492][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:57.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.494][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.495][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:57.496][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:57.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.497][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.498][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.498][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.500][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.501][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.501][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.503][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.503][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.504][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.506][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.506][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.507][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.509][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.509][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.510][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.511][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.511][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.512][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:57.513][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:57.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.515][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.515][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:57.516][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:57.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.518][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.518][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.519][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.521][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.521][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:57.522][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:57.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.524][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.524][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.525][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.527][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.527][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.528][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.530][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.530][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:57.531][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:57.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.533][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.533][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.534][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.536][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.537][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.537][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.539][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.539][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.540][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.542][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.542][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:57.543][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:57.544][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.545][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.546][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-05-04 16:02:57.546][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-05-04 16:02:57.547][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:57.548][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:57.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.549][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.550][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.551][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.552][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.553][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.554][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.555][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.556][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.557][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.558][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.559][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.560][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.561][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.562][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.563][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.564][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.565][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:57.566][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:57.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.567][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.568][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:57.569][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:57.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.570][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.571][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.572][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.573][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.574][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.575][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.576][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.585][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.586][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.588][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.589][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:57.590][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:57.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.591][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.592][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.593][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.594][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.595][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.596][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.597][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.598][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.599][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.600][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.601][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-04 16:02:57.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:57.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:57.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.605][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:57.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:57.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.608][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:57.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:57.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.627][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.642][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.645][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.648][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.651][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.654][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.657][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:57.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:57.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.660][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:57.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:57.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.664][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:57.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:57.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.667][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:57.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:57.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.670][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:57.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:57.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.673][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:57.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:57.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.676][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.679][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.682][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.685][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.688][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.691][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.704][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:57.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:57.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.707][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:57.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:57.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.710][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:57.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:57.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.719][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.722][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.725][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.728][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.732][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.735][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.738][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.746][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171260713, (3R)-3-amino-3-(1,3-benzodioxol-5-yl)propanenitrile;hydrochloride, (3R)-3-amino-3-(1,3-benzodioxol-5-yl)propanenitrile;hydrochloride, (3R)-3-amino-3-(1,3-benzodioxol-5-yl)propanenitrile;hydrochloride, (3R)-3-azanyl-3-(1,3-benzodioxol-5-yl)propanenitrile;hydrochloride, ...].
biodb.DEBUG[2024-05-04 16:02:57.747][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:57.748][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:57.749][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:57.753][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:57.754][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:57.755][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:57.756][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:57.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:57.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:57.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:57.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:57.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.766][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.769][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.772][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.775][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.793][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.796][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:57.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:57.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.799][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:57.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:57.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.802][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:57.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:57.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.805][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:57.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:57.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.808][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.811][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.814][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:57.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:57.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.817][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:57.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:57.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.824][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.830][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.841][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:57.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:57.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.845][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:57.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:57.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.849][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.852][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.855][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.858][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.862][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.865][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.868][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:57.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:57.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.871][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:57.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:57.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.875][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:57.875][private$selectFields]
biodb.TRACE[2024-05-04 16:02:57.876][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:57.877][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:57.878][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-05-04 16:02:57.878][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:57.879][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:57.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.881][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.881][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.882][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.884][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.884][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.885][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.886][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.887][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.888][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.890][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.890][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.891][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.893][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.893][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.894][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.896][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.896][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:57.897][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:57.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.899][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.899][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:57.900][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:57.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.902][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.902][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.903][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.905][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.905][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:57.906][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:57.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.908][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.908][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.909][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.911][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.912][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.912][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.914][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.915][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:57.915][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:57.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.917][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.918][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.918][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.920][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.921][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.921][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.923][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.923][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.924][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.926][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.926][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:57.927][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:57.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.929][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.930][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:57.930][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:57.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.932][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.933][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.934][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.935][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.936][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.937][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.938][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.939][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.940][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.941][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.942][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.942][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.943][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.944][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.945][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.945][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.947][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.948][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:57.948][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:57.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.950][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.951][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:57.951][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:57.952][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.953][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.954][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.954][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:57.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.956][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.957][ef$get] Asked field names are: logp.
biodb.TRACE[2024-05-04 16:02:57.958][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-05-04 16:02:57.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.959][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.960][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.961][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:57.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.962][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.963][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.964][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:57.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.965][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.966][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:57.967][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:57.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.968][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.969][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.970][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:57.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.971][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.972][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.973][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:57.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.974][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.975][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.976][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:57.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.977][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.978][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:02:57.979][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:02:57.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.980][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.981][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-05-04 16:02:57.982][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-05-04 16:02:57.982][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:57.983][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:57.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.985][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.985][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.986][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:57.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.988][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.989][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.989][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:57.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.991][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.991][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.992][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:57.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.994][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.994][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.995][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:57.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:57.996][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:57.997][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.998][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:57.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.000][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.000][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:58.001][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:58.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.003][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.003][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:58.004][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:58.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.005][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.006][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:58.007][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:58.008][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.008][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.009][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:58.010][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:58.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.011][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.012][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:58.013][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:58.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.014][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.015][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:58.016][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:58.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.017][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.018][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:58.019][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:58.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.020][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.021][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:58.022][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:58.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.023][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.024][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:58.024][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:58.025][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.026][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.027][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-05-04 16:02:58.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:58.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:58.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.031][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:58.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:58.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:58.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:58.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.037][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:58.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:58.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:58.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:58.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.043][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:58.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-05-04 16:02:58.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.046][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:58.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:58.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:58.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:58.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.052][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:58.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-05-04 16:02:58.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.055][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:58.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:58.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:58.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:58.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.061][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:58.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-05-04 16:02:58.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:58.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:58.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:58.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:58.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:58.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:58.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.074][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:58.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:58.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.077][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:58.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:58.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:58.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-05-04 16:02:58.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.083][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:58.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:58.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.260][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:58.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:58.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.264][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:58.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:58.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.267][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:58.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:58.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.270][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:58.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:58.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.273][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-05-04 16:02:58.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-05-04 16:02:58.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.276][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:58.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:58.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.279][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:58.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:58.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.282][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-05-04 16:02:58.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-05-04 16:02:58.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.285][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:58.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:58.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:58.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:58.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.290][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:58.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:58.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.293][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:58.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:58.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:58.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:58.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.299][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:58.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:58.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.302][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:58.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:58.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.305][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:58.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:58.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.308][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:58.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:58.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.311][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:58.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:58.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.314][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:58.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:58.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.317][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:58.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:58.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.320][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:58.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:58.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.323][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:58.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:58.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.326][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:58.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-05-04 16:02:58.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.329][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:58.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:58.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.332][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:58.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:58.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.335][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:58.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-05-04 16:02:58.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.343][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171260621, (3R)-3-amino-3-(1,3-benzodioxol-4-yl)propanenitrile;hydrochloride, (3R)-3-amino-3-(1,3-benzodioxol-4-yl)propanenitrile;hydrochloride, (3R)-3-amino-3-(1,3-benzodioxol-4-yl)propanenitrile;hydrochloride, (3R)-3-azanyl-3-(1,3-benzodioxol-4-yl)propanenitrile;hydrochloride, ...].
biodb.DEBUG[2024-05-04 16:02:58.344][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:58.344][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-05-04 16:02:58.349][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-04 16:02:58.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-04 16:02:58.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.352][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-04 16:02:58.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-04 16:02:58.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-04 16:02:58.358][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-05-04 16:02:58.359][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.comp from the request scheduler
biodb.INFO [2024-05-04 16:02:58.359][self$deleteConn] Connector "ncbi.pubchem.comp" deleted.
biodb.DEBUG[2024-05-04 16:02:58.360][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-05-04 16:02:58.361][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:58.362][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:58.362][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.363][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.364][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-05-04 16:02:58.367][biodb::testContext]
biodb.INFO [2024-05-04 16:02:58.368][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-04 16:02:58.369][biodb::testContext] Test context - Pubchem Subst long tests
biodb.INFO [2024-05-04 16:02:58.370][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-04 16:02:58.370][biodb::testContext]
biodb.INFO [2024-05-04 16:02:58.372][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-05-04 16:02:58.373][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-05-04 16:02:58.377][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-04 16:02:58.378][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-05-04 16:02:58.379][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-05-04 16:02:58.379][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.380][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.382][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-05-04 16:02:58.383][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-05-04 16:02:58.384][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.384][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.385][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.386][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-05-04 16:02:58.387][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-05-04 16:02:58.387][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.388][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.389][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.390][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-05-04 16:02:58.391][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-05-04 16:02:58.391][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-05-04 16:02:58.392][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.393][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.393][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.394][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-05-04 16:02:58.395][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-05-04 16:02:58.396][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-05-04 16:02:58.396][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.397][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.398][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-05-04 16:02:58.399][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-05-04 16:02:58.400][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.402][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-05-04 16:02:58.403][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-05-04 16:02:58.403][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-05-04 16:02:58.404][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.406][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.406][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-05-04 16:02:58.407][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-05-04 16:02:58.408][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.409][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.410][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-05-04 16:02:58.411][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-05-04 16:02:58.412][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-05-04 16:02:58.412][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.413][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.414][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.414][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-05-04 16:02:58.415][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-05-04 16:02:58.416][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-05-04 16:02:58.417][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-05-04 16:02:58.417][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-05-04 16:02:58.418][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-05-04 16:02:58.419][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.419][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.420][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.421][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-05-04 16:02:58.422][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-05-04 16:02:58.422][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.423][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.424][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.425][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-05-04 16:02:58.425][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-05-04 16:02:58.426][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.427][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.428][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-05-04 16:02:58.429][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-05-04 16:02:58.430][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.430][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.431][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.432][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-05-04 16:02:58.432][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-05-04 16:02:58.433][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.434][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.434][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.435][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-05-04 16:02:58.436][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-05-04 16:02:58.436][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.437][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.438][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.439][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-05-04 16:02:58.439][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-05-04 16:02:58.456][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-05-04 16:02:58.457][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.457][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.458][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.459][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-05-04 16:02:58.460][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-05-04 16:02:58.460][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-05-04 16:02:58.461][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.462][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.463][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-05-04 16:02:58.465][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-04 16:02:58.465][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-05-04 16:02:58.466][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.467][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:02:58.468][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.468][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:02:58.469][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-04 16:02:58.470][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:02:58.471][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-04 16:02:58.471][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:02:58.472][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.473][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-05-04 16:02:58.474][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:02:58.475][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:58.476][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.477][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-04 16:02:58.477][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-04 16:02:58.477][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-04 16:02:58.477][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-04 16:02:58.477][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-04 16:02:58.477][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-04 16:02:58.478][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:02:58.479][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:02:58.480][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:02:58.481][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:02:58.481][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:02:58.482][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:02:58.483][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:58.484][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:02:58.485][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:02:58.485][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-04 16:02:58.486][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:58.487][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-05-04 16:02:58.489][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-04 16:02:58.490][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-05-04 16:02:58.490][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.491][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:02:58.492][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.493][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:02:58.493][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-04 16:02:58.494][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:02:58.495][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-04 16:02:58.496][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:02:58.497][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.497][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-05-04 16:02:58.498][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:02:58.499][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:58.499][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.500][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-04 16:02:58.500][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-04 16:02:58.500][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-04 16:02:58.500][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-04 16:02:58.500][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-04 16:02:58.501][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-04 16:02:58.502][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:02:58.502][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:02:58.503][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:02:58.504][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:02:58.505][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:02:58.505][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:02:58.506][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:58.507][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:02:58.507][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:02:58.508][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-04 16:02:58.509][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:58.510][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-05-04 16:02:58.511][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.512][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-05-04 16:02:58.513][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.513][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:02:58.514][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.515][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:02:58.516][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-04 16:02:58.516][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:02:58.517][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-04 16:02:58.518][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:02:58.519][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-04 16:02:58.519][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-05-04 16:02:58.520][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:02:58.521][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:58.522][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.522][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:58.523][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-04 16:02:58.524][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:02:58.525][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:02:58.525][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:02:58.526][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:02:58.527][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:02:58.528][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:02:58.528][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:58.529][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:02:58.530][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:02:58.531][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-04 16:02:58.531][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:58.532][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-05-04 16:02:58.539][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.539][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-05-04 16:02:58.540][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.541][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:02:58.542][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.542][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:02:58.543][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-04 16:02:58.544][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:02:58.545][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-04 16:02:58.545][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:02:58.546][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-04 16:02:58.547][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-05-04 16:02:58.548][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:02:58.548][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:58.549][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.550][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:58.550][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-04 16:02:58.551][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:02:58.552][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:02:58.553][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:02:58.553][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:02:58.554][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:02:58.555][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:02:58.556][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:58.556][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:02:58.557][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:02:58.558][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-04 16:02:58.558][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:58.559][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-04 16:02:58.560][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.561][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.562][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.563][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.563][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.564][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.565][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.566][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.568][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.568][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.570][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.571][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.572][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.574][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.575][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.576][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.577][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.578][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.578][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.579][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.581][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.582][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.584][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.585][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.585][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.586][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.587][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.588][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.588][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.589][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.590][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.591][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.594][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.594][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.596][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.597][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.598][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.600][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.602][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.603][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.604][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.605][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.607][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.607][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.608][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.609][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.610][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.611][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.612][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.613][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.613][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.614][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.615][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.615][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.617][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-05-04 16:02:58.618][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-05-04 16:02:58.619][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-05-04 16:02:58.620][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-05-04 16:02:58.621][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-05-04 16:02:58.622][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-04 16:02:58.623][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-05-04 16:02:58.624][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-05-04 16:02:58.625][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-05-04 16:02:58.626][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-04 16:02:58.627][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-04 16:02:58.628][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-05-04 16:02:58.629][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-05-04 16:02:58.630][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-05-04 16:02:58.631][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-04 16:02:58.632][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-04 16:02:58.633][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-05-04 16:02:58.635][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-05-04 16:02:58.635][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-05-04 16:02:58.637][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-05-04 16:02:58.638][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-05-04 16:02:58.639][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-05-04 16:02:58.640][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-05-04 16:02:58.641][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-05-04 16:02:58.642][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-05-04 16:02:58.643][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-05-04 16:02:58.644][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-05-04 16:02:58.645][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-05-04 16:02:58.646][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-05-04 16:02:58.647][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-05-04 16:02:58.648][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-05-04 16:02:58.649][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-05-04 16:02:58.650][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-05-04 16:02:58.651][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-05-04 16:02:58.652][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-05-04 16:02:58.653][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-05-04 16:02:58.654][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-05-04 16:02:58.655][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-05-04 16:02:58.656][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-05-04 16:02:58.657][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-05-04 16:02:58.658][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-05-04 16:02:58.659][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-05-04 16:02:58.660][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-05-04 16:02:58.661][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-05-04 16:02:58.663][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-05-04 16:02:58.664][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-04 16:02:58.665][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-05-04 16:02:58.666][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-05-04 16:02:58.667][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-05-04 16:02:58.668][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-05-04 16:02:58.669][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-05-04 16:02:58.670][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-05-04 16:02:58.671][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-05-04 16:02:58.672][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-05-04 16:02:58.673][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-05-04 16:02:58.674][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-05-04 16:02:58.675][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-05-04 16:02:58.676][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-05-04 16:02:58.677][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-05-04 16:02:58.678][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-05-04 16:02:58.679][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-05-04 16:02:58.680][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-05-04 16:02:58.681][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-05-04 16:02:58.682][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-05-04 16:02:58.683][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-05-04 16:02:58.684][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-05-04 16:02:58.685][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-05-04 16:02:58.686][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-05-04 16:02:58.687][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-05-04 16:02:58.688][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-05-04 16:02:58.689][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-05-04 16:02:58.690][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-05-04 16:02:58.691][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-05-04 16:02:58.692][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-05-04 16:02:58.693][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-05-04 16:02:58.694][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-05-04 16:02:58.695][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-05-04 16:02:58.696][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-05-04 16:02:58.697][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-05-04 16:02:58.698][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-05-04 16:02:58.700][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-05-04 16:02:58.701][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-05-04 16:02:58.702][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-05-04 16:02:58.703][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-05-04 16:02:58.704][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-05-04 16:02:58.705][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-04 16:02:58.705][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.707][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.708][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:58.710][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:58.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.712][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.713][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:58.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:58.715][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.716][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.716][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.718][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:58.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:58.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.720][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.721][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.722][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.722][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:58.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:58.724][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.725][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.726][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.727][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:58.728][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:58.729][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.732][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.732][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:58.733][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:58.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.734][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.736][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.736][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.737][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:58.737][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:58.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.739][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.739][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.741][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.742][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:58.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:58.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.745][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.746][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.746][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:58.747][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:58.748][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.748][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.750][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.750][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:58.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:58.752][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.755][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:58.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:58.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.758][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.760][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:58.761][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:58.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.763][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.763][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.764][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.765][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:58.766][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:58.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.768][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.769][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.770][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:58.771][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:58.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.774][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.775][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:58.776][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:58.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.778][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.779][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:58.786][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:58.786][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.788][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.788][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.789][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:02:58.790][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:58.790][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:58.791][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.792][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:58.795][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-05-04 16:02:58.796][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-05-04 16:02:58.797][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.798][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-05-04 16:02:58.799][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.800][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:02:58.800][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.801][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:02:58.802][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.803][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:02:58.804][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-05-04 16:02:58.804][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:02:58.805][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.806][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-05-04 16:02:58.807][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:02:58.807][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-05-04 16:02:58.807][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-05-04 16:02:58.808][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-04 16:02:58.809][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:58.810][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-04 16:02:58.810][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:02:58.811][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:02:58.812][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:02:58.812][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:02:58.813][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:02:58.814][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:02:58.814][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-05-04 16:02:58.814][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-05-04 16:02:58.815][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:02:58.816][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:02:58.816][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.817][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:58.818][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-05-04 16:02:58.819][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.820][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-05-04 16:02:58.821][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.822][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:02:58.823][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.823][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:02:58.824][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.825][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:02:58.825][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-04 16:02:58.826][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:02:58.827][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.828][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-05-04 16:02:58.828][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:02:58.829][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-05-04 16:02:58.829][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-05-04 16:02:58.829][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-05-04 16:02:58.829][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-05-04 16:02:58.829][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-05-04 16:02:58.829][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-05-04 16:02:58.830][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-04 16:02:58.831][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-04 16:02:58.831][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-05-04 16:02:58.832][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:02:58.833][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:02:58.834][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:02:58.834][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:02:58.835][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:02:58.836][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:02:58.836][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-04 16:02:58.836][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-04 16:02:58.837][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:02:58.838][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:02:58.839][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.839][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:58.840][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-05-04 16:02:58.842][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-04 16:02:58.842][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-05-04 16:02:58.843][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.844][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:02:58.845][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.845][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:02:58.846][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.847][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:02:58.847][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-04 16:02:58.848][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:02:58.849][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.850][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-05-04 16:02:58.850][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:02:58.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-05-04 16:02:58.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:02:58.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:02:58.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:02:58.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:02:58.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:02:58.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:02:58.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:02:58.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:02:58.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:02:58.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-05-04 16:02:58.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:02:58.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:02:58.851][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-05-04 16:02:58.852][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-04 16:02:58.853][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-04 16:02:58.853][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-04 16:02:58.853][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-04 16:02:58.854][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-05-04 16:02:58.854][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:02:58.855][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:02:58.856][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:02:58.856][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:02:58.857][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:02:58.858][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:02:58.859][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-04 16:02:58.859][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-04 16:02:58.859][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-05-04 16:02:58.859][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:02:58.860][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:02:58.861][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.861][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-05-04 16:02:58.862][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-05-04 16:02:58.864][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.864][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-05-04 16:02:58.865][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.866][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:02:58.867][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.867][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:02:58.868][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.869][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:02:58.870][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-05-04 16:02:58.871][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:02:58.871][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.872][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-05-04 16:02:58.873][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:02:58.873][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-05-04 16:02:58.873][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-05-04 16:02:58.874][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-04 16:02:58.875][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:02:58.876][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-05-04 16:02:58.876][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:02:58.877][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:02:58.878][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:02:58.878][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:02:58.879][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:02:58.880][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:02:58.880][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-05-04 16:02:58.880][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-05-04 16:02:58.880][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-05-04 16:02:58.881][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:02:58.882][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:02:58.883][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-04 16:02:58.883][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-05-04 16:02:58.884][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-05-04 16:02:58.885][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-04 16:02:58.887][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-04 16:02:58.888][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-05-04 16:02:58.889][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-04 16:02:58.890][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-05-04 16:02:58.894][super$initialize] Initialize connector ncbi.pubchem.subst.
biodb.DEBUG[2024-05-04 16:02:58.895][super$initialize] Register connector ncbi.pubchem.subst with the request scheduler
biodb.DEBUG[2024-05-04 16:02:58.896][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.subst.
biodb.DEBUG[2024-05-04 16:02:58.897][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2024-05-04 16:02:58.898][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-05-04 16:02:58.898][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-05-04 16:02:58.900][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2024-05-04 16:02:58.900][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-05-04 16:02:58.901][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-05-04 16:02:58.902][rule$addConnector] Connector "ncbi.pubchem.subst" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-05-04 16:02:58.906][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.subst for database class ncbi.pubchem.subst .
biodb.INFO [2024-05-04 16:02:58.909][biodb::testThat]
biodb.INFO [2024-05-04 16:02:58.910][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-05-04 16:02:58.911][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:02:58.911][biodb::testThat]
biodb.TRACE[2024-05-04 16:02:58.914][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.subst-3-content.xml".
biodb.DEBUG[2024-05-04 16:02:58.915][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2024-05-04 16:02:58.917][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2024-05-04 16:02:58.918][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:58.919][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:58.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:58.924][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:58.925][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:58.925][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:58.926][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:58.928][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:58.929][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:58.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.931][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:58.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:58.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.935][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:58.935][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:58.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.937][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.938][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:58.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:58.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.941][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-04 16:02:58.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-04 16:02:58.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.944][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-04 16:02:58.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-04 16:02:58.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:58.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:58.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.951][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-04 16:02:58.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-04 16:02:58.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.954][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:58.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:58.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.956][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:58.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:58.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:58.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:58.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.963][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:58.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:58.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.966][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:58.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:58.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.969][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:58.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:58.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:58.972][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3.
biodb.TRACE[2024-05-04 16:02:58.973][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:58.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:58.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.976][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:58.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:58.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:58.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:58.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.983][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:02:58.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:02:58.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.986][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:02:58.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:02:58.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.989][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-04 16:02:58.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-04 16:02:58.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.992][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-04 16:02:58.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-04 16:02:58.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:58.996][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:58.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:58.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:58.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.004][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-04 16:02:59.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-04 16:02:59.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.011][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:59.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:59.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.014][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:59.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:59.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.017][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:59.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:59.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:59.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:59.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.025][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:59.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:59.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:59.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:59.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.031][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-04 16:02:59.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-04 16:02:59.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.034][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-04 16:02:59.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-04 16:02:59.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.037][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-04 16:02:59.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-04 16:02:59.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.045][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:59.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:59.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:59.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:59.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:59.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:59.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.060][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:59.061][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:59.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.062][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.063][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:59.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:59.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.072][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:59.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:59.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.075][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:59.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:59.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.078][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:59.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:59.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.081][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:59.082][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:59.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.084][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.084][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:59.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:59.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.094][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:59.095][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:59.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.096][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.100][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:59.101][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:59.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.102][ef$get] fields variable is a list.
biodb.INFO [2024-05-04 16:02:59.109][biodb::testThat]
biodb.INFO [2024-05-04 16:02:59.110][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-05-04 16:02:59.111][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:02:59.111][biodb::testThat]
biodb.DEBUG[2024-05-04 16:02:59.113][private$loadEntries] Creating entries from ids [1]: "3".
biodb.DEBUG[2024-05-04 16:02:59.114][conn$getEntryContent] Get PubChem Substance entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-04 16:02:59.116][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3".
biodb.TRACE[2024-05-04 16:02:59.117][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:02:59.118][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.subst-e80afa72f6aa7425ca0c72f99f7b9d75/3.xml".
biodb.DEBUG[2024-05-04 16:02:59.119][conn$getEntryContent] 1 PubChem Substance entry content(s) loaded from cache.
biodb.DEBUG[2024-05-04 16:02:59.120][self$createEntryFromContent] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2024-05-04 16:02:59.121][self$createEntryFromContent] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2024-05-04 16:02:59.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:59.123][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:59.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:59.128][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:59.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:59.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:59.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:59.132][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:59.133][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:59.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.134][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:59.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:59.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.138][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:59.139][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:59.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.140][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.141][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:59.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:59.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.144][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-04 16:02:59.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-04 16:02:59.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.147][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-04 16:02:59.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-04 16:02:59.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.150][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:59.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:59.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.153][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-04 16:02:59.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-05-04 16:02:59.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:59.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:59.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:59.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:59.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.162][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:59.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:59.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:59.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:59.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.168][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:59.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:59.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:59.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:59.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:59.174][self$createEntryFromContent] Accession numbers: 3.
biodb.TRACE[2024-05-04 16:02:59.175][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-04 16:02:59.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-04 16:02:59.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.178][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-04 16:02:59.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-04 16:02:59.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.180][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-04 16:02:59.181][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-04 16:02:59.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-04 16:02:59.190][biodb::testThat]
biodb.INFO [2024-05-04 16:02:59.191][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-05-04 16:02:59.191][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:02:59.192][biodb::testThat]
biodb.INFO [2024-05-04 16:02:59.197][biodb::testThat]
biodb.INFO [2024-05-04 16:02:59.198][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-05-04 16:02:59.199][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:02:59.199][biodb::testThat]
biodb.WARN [2024-05-04 16:02:59.202][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2024-05-04 16:02:59.205][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2024-05-04 16:02:59.212][biodb::testThat]
biodb.INFO [2024-05-04 16:02:59.213][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-05-04 16:02:59.213][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:02:59.214][biodb::testThat]
biodb.TRACE[2024-05-04 16:02:59.222][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:59.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:59.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.225][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:59.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:59.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.228][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:59.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:59.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.231][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:02:59.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:02:59.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.234][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:02:59.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:02:59.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.237][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-04 16:02:59.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-04 16:02:59.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.240][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-04 16:02:59.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-04 16:02:59.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.244][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:59.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:59.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.247][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-05-04 16:02:59.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-05-04 16:02:59.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.250][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:59.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-05-04 16:02:59.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.254][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:02:59.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:02:59.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.257][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:02:59.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:02:59.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.260][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-04 16:02:59.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-04 16:02:59.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:59.263][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-04 16:02:59.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-04 16:02:59.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:59.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-04 16:02:59.270][biodb::testThat]
biodb.INFO [2024-05-04 16:02:59.271][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-05-04 16:02:59.272][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:02:59.273][biodb::testThat]
biodb.INFO [2024-05-04 16:02:59.279][biodb::testThat]
biodb.INFO [2024-05-04 16:02:59.280][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-05-04 16:02:59.281][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:02:59.281][biodb::testThat]
biodb.INFO [2024-05-04 16:02:59.288][biodb::testThat]
biodb.INFO [2024-05-04 16:02:59.289][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-05-04 16:02:59.290][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:02:59.290][biodb::testThat]
biodb.DEBUG[2024-05-04 16:02:59.293][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/substance/3".
biodb.DEBUG[2024-05-04 16:02:59.395][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/substance/3.
biodb.INFO [2024-05-04 16:02:59.506][biodb::testThat]
biodb.INFO [2024-05-04 16:02:59.507][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-05-04 16:02:59.508][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:02:59.508][biodb::testThat]
biodb.DEBUG[2024-05-04 16:02:59.668][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=3&t=l.
biodb.INFO [2024-05-04 16:02:59.798][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-05-04 16:02:59.800][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.subst from the request scheduler
biodb.INFO [2024-05-04 16:02:59.801][self$deleteConn] Connector "ncbi.pubchem.subst" deleted.
biodb.DEBUG[2024-05-04 16:02:59.801][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-05-04 16:02:59.802][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:59.803][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:59.803][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:59.804][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:59.805][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:59.806][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1031 ]

[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1031 ]
> 
> proc.time()
   user  system elapsed 
 37.320   1.780  83.494 

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.8.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck’
* using R version 4.4.0 beta (2024-04-14 r86421)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbNcbi/DESCRIPTION’ ... OK
* this is package ‘biodbNcbi’ version ‘1.8.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbNcbi’ can be installed ... OK
* checking installed package size ... NOTE
  installed size is  8.2Mb
  sub-directories of 1Mb or more:
    testref   7.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... WARNING
'library' or 'require' call not declared from: ‘biodbNci’
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: 1 WARNING, 2 NOTEs
See
  ‘/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/00check.log’
for details.


Installation output

biodbNcbi.Rcheck/00install.out

* installing *source* package ‘biodbNcbi’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (biodbNcbi)