Back to Long Tests report for BioC 3.19

This page was generated on 2024-05-04 23:55:02 -0400 (Sat, 04 May 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_644.4.0 beta (2024-04-15 r86425) -- "Puppy Cup" 4753
palomino3Windows Server 2022 Datacenterx644.4.0 beta (2024-04-15 r86425 ucrt) -- "Puppy Cup" 4486
lconwaymacOS 12.7.1 Montereyx86_644.4.0 beta (2024-04-14 r86421) -- "Puppy Cup" 4519
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 10/33HostnameOS / ArchCHECK
biodbLipidmaps 1.10.0  (landing page)
Pierrick Roger
Snapshot Date: 2024-05-04 09:55:02 -0400 (Sat, 04 May 2024)
git_url: https://git.bioconductor.org/packages/biodbLipidmaps
git_branch: RELEASE_3_19
git_last_commit: 323ed25
git_last_commit_date: 2024-04-30 11:39:02 -0400 (Tue, 30 Apr 2024)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  ERROR  
palomino3Windows Server 2022 Datacenter / x64  ERROR  
lconwaymacOS 12.7.1 Monterey / x86_64  OK  

CHECK results for biodbLipidmaps on lconway


To the developers/maintainers of the biodbLipidmaps package:
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: biodbLipidmaps
Version: 1.10.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbLipidmaps_1.10.0.tar.gz
StartedAt: 2024-05-04 16:00:52 -0400 (Sat, 04 May 2024)
EndedAt: 2024-05-04 16:05:45 -0400 (Sat, 04 May 2024)
EllapsedTime: 292.8 seconds
RetCode: 0
Status:   OK  
CheckDir: biodbLipidmaps.Rcheck
Warnings: 0

Tests output

biodbLipidmaps.Rcheck/tests/testthat.Rout


R version 4.4.0 beta (2024-04-14 r86421) -- "Puppy Cup"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20

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Type 'license()' or 'licence()' for distribution details.

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Type 'contributors()' for more information and
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> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbLipidmaps)
Warning message:
In fun(libname, pkgname) :
  Package 'biodbLipidmaps' is deprecated and will be removed from
  Bioconductor version 3.20
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbLipidmaps")
biodb.INFO [2024-05-04 16:01:31.786][biodb::testContext]
biodb.INFO [2024-05-04 16:01:31.790][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-04 16:01:31.791][biodb::testContext] Test context - Generic long tests
biodb.INFO [2024-05-04 16:01:31.792][biodb::testContext] ********************************************************************************
biodb.INFO [2024-05-04 16:01:31.793][biodb::testContext]
biodb.INFO [2024-05-04 16:01:31.799][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-05-04 16:01:31.801][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-05-04 16:01:31.808][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-04 16:01:31.809][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-05-04 16:01:31.810][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-05-04 16:01:31.811][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:31.812][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:31.813][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:31.813][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-05-04 16:01:31.831][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-05-04 16:01:31.832][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:31.833][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:31.834][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:31.835][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-05-04 16:01:31.836][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-05-04 16:01:31.837][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:31.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:31.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:31.839][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-05-04 16:01:31.840][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-05-04 16:01:31.841][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-05-04 16:01:31.842][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:31.843][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:31.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:31.844][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-05-04 16:01:31.856][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-05-04 16:01:31.857][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-05-04 16:01:31.858][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:31.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:31.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:31.860][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-05-04 16:01:31.861][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-05-04 16:01:31.862][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:31.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:31.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:31.864][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-05-04 16:01:31.865][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-05-04 16:01:31.865][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-05-04 16:01:31.866][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:31.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:31.868][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:31.868][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-05-04 16:01:31.869][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-05-04 16:01:31.870][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:31.871][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:31.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:31.872][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-05-04 16:01:31.873][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-05-04 16:01:31.874][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-05-04 16:01:31.875][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:31.875][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:31.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:31.877][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-05-04 16:01:31.878][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-05-04 16:01:31.878][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-05-04 16:01:31.879][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-05-04 16:01:31.880][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-05-04 16:01:31.881][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-05-04 16:01:31.881][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:31.882][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:31.883][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:31.884][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-05-04 16:01:31.885][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-05-04 16:01:31.885][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:31.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:31.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:31.888][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-05-04 16:01:31.889][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-05-04 16:01:31.889][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:31.890][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:31.891][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:31.892][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-05-04 16:01:31.892][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-05-04 16:01:31.893][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:31.894][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:31.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:31.896][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-05-04 16:01:31.897][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-05-04 16:01:31.897][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:31.898][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:31.899][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:31.900][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-05-04 16:01:31.901][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-05-04 16:01:31.901][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:31.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:31.903][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:31.904][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-05-04 16:01:31.904][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-05-04 16:01:31.922][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-05-04 16:01:31.923][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:31.924][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:31.924][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:31.925][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-05-04 16:01:31.926][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-05-04 16:01:31.927][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-05-04 16:01:31.928][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:31.928][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:31.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:31.932][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-05-04 16:01:31.960][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:31.972][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-05-04 16:01:31.973][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:31.974][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:01:31.975][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:31.976][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:01:31.977][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:31.978][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:01:31.978][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-04 16:01:31.979][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:01:31.980][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:31.981][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-05-04 16:01:31.982][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:01:31.983][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:31.983][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:31.984][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-04 16:01:31.984][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-04 16:01:31.984][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-04 16:01:31.984][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-04 16:01:31.984][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-04 16:01:31.985][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-04 16:01:31.986][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:31.987][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:31.988][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:01:31.988][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:31.989][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:31.990][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:01:31.991][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:31.992][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:01:31.992][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:01:31.993][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:31.994][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:31.995][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-05-04 16:01:31.996][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:31.997][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-05-04 16:01:31.998][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:31.999][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:01:31.999][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:32.000][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:01:32.001][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:32.002][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:01:32.003][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-04 16:01:32.004][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:01:32.005][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:32.005][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-05-04 16:01:32.006][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:01:32.007][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:32.008][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:32.009][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-04 16:01:32.009][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-04 16:01:32.009][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-05-04 16:01:32.009][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-05-04 16:01:32.009][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-05-04 16:01:32.010][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-04 16:01:32.010][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:32.011][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:32.012][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:01:32.013][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:32.014][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:32.014][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:01:32.015][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:32.016][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:01:32.017][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:01:32.017][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:32.018][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:32.019][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-05-04 16:01:32.021][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:32.021][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-05-04 16:01:32.022][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:32.023][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:01:32.024][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:32.025][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:01:32.026][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:32.027][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:01:32.027][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-04 16:01:32.028][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:01:32.029][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:32.030][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-05-04 16:01:32.031][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:01:32.032][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:32.037][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:32.038][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:32.039][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-04 16:01:32.040][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:32.040][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:32.041][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:01:32.042][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:32.043][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:32.043][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:01:32.044][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:32.045][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:01:32.046][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:01:32.047][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:32.047][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:32.048][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-05-04 16:01:32.050][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:32.050][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-05-04 16:01:32.051][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:32.052][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:01:32.053][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:32.053][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:01:32.054][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:32.055][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:01:32.056][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-05-04 16:01:32.057][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:01:32.057][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:32.058][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-05-04 16:01:32.059][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:01:32.060][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:32.061][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:32.061][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:32.062][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-04 16:01:32.063][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:32.064][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:32.065][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:01:32.065][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:32.066][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:32.067][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:01:32.068][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:32.069][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:01:32.069][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:01:32.070][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:32.071][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:32.074][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-04 16:01:32.075][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.076][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.077][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:32.077][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.079][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.080][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:32.081][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.082][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.083][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.083][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.084][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:32.085][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.086][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.086][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.088][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:32.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.089][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.090][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.091][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.092][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:32.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.093][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.095][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.095][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:32.096][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.097][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.098][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.099][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:32.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.101][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.103][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:32.104][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.104][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.105][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.107][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:32.107][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.109][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.110][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:32.111][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.112][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.114][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:32.115][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.116][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.116][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.117][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.118][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:32.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.121][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:32.122][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.123][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.124][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.124][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.125][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:32.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.126][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.127][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.128][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.129][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:32.129][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.130][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.131][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.132][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:32.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.134][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.136][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:32.137][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.138][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.138][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.139][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.140][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-05-04 16:01:32.144][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-05-04 16:01:32.145][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-05-04 16:01:32.146][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-05-04 16:01:32.147][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-05-04 16:01:32.148][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-05-04 16:01:32.150][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-05-04 16:01:32.151][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-05-04 16:01:32.152][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-05-04 16:01:32.153][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-05-04 16:01:32.154][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-05-04 16:01:32.155][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-05-04 16:01:32.156][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-05-04 16:01:32.157][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-05-04 16:01:32.159][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-05-04 16:01:32.160][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-04 16:01:32.161][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-05-04 16:01:32.162][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-05-04 16:01:32.163][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-05-04 16:01:32.164][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-05-04 16:01:32.165][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-05-04 16:01:32.167][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-05-04 16:01:32.168][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-05-04 16:01:32.170][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-05-04 16:01:32.171][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-05-04 16:01:32.172][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-05-04 16:01:32.173][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-05-04 16:01:32.174][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-05-04 16:01:32.175][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-05-04 16:01:32.176][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-05-04 16:01:32.177][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-05-04 16:01:32.179][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-05-04 16:01:32.180][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-05-04 16:01:32.181][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-05-04 16:01:32.182][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-05-04 16:01:32.183][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-05-04 16:01:32.184][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-05-04 16:01:32.185][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-05-04 16:01:32.186][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-05-04 16:01:32.188][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-05-04 16:01:32.189][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-05-04 16:01:32.190][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-05-04 16:01:32.191][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-05-04 16:01:32.192][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-05-04 16:01:32.193][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-05-04 16:01:32.194][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-05-04 16:01:32.196][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-05-04 16:01:32.197][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-05-04 16:01:32.203][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-05-04 16:01:32.204][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-05-04 16:01:32.205][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-05-04 16:01:32.206][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-05-04 16:01:32.207][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-05-04 16:01:32.208][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-05-04 16:01:32.209][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-05-04 16:01:32.211][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-05-04 16:01:32.212][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-05-04 16:01:32.213][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-05-04 16:01:32.214][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-05-04 16:01:32.215][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-05-04 16:01:32.216][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-05-04 16:01:32.217][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-05-04 16:01:32.219][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-05-04 16:01:32.220][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-05-04 16:01:32.221][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-05-04 16:01:32.222][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-05-04 16:01:32.223][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-05-04 16:01:32.224][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-05-04 16:01:32.225][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-05-04 16:01:32.227][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-05-04 16:01:32.228][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-05-04 16:01:32.229][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-05-04 16:01:32.230][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-05-04 16:01:32.231][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-05-04 16:01:32.232][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-05-04 16:01:32.234][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-05-04 16:01:32.235][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-05-04 16:01:32.236][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-05-04 16:01:32.237][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-05-04 16:01:32.238][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-05-04 16:01:32.240][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-05-04 16:01:32.241][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-05-04 16:01:32.242][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-05-04 16:01:32.247][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-05-04 16:01:32.248][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-05-04 16:01:32.251][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-05-04 16:01:32.252][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.252][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.253][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.254][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.258][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:32.258][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:32.259][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:32.260][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.261][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.261][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.262][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.263][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:32.264][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:32.264][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:32.265][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.266][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.267][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.267][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.268][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:32.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:32.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:32.270][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.273][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.273][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.274][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:32.275][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:32.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:32.276][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.277][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.278][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.279][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.279][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:32.280][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:32.281][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:32.282][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.282][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.283][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.284][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.285][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:32.286][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:32.286][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:32.287][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.288][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.288][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.289][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.290][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:32.291][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:32.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:32.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.293][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.294][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.296][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:32.297][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:32.297][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:32.298][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.299][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.299][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.300][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.301][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:32.302][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:32.302][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:32.303][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.304][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.305][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.305][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.306][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:32.307][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:32.307][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:32.308][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.309][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.309][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.310][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.311][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:32.312][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:32.313][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:32.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.314][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.315][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.316][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.316][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:32.317][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:32.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:32.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.319][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.320][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.321][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.322][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:32.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:32.323][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:32.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.325][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.325][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.327][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:32.328][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:32.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:32.329][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.330][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.331][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.332][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:32.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:32.334][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:32.334][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.336][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.337][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:32.338][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:32.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:32.340][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.343][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-05-04 16:01:32.343][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:32.344][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:32.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.346][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.347][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:32.349][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbLipidmaps.Rcheck/biodbLipidmaps/definitions.yml".
biodb.DEBUG[2024-05-04 16:01:32.357][self$getDbsInfo()$define] Define connector lipidmaps.structure.
biodb.DEBUG[2024-05-04 16:01:32.358][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:32.359][self$setPropertyValue] Setting property "description" to "NA".
biodb.DEBUG[2024-05-04 16:01:32.360][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:32.365][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-05-04 16:01:32.366][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:32.367][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-05-04 16:01:32.368][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:32.369][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-05-04 16:01:32.369][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-05-04 16:01:32.370][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-05-04 16:01:32.371][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:32.372][self$setPropertyValue] Setting property "name" to "LIPID MAPS Structure".
biodb.DEBUG[2024-05-04 16:01:32.373][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-05-04 16:01:32.373][self$setPropertyValue] Setting property "parsing.expr" to "LM_ID".
biodb.DEBUG[2024-05-04 16:01:32.373][self$setPropertyValue] Setting property "parsing.expr" to "CHEBI_ID".
biodb.DEBUG[2024-05-04 16:01:32.373][self$setPropertyValue] Setting property "parsing.expr" to "HMDBID".
biodb.DEBUG[2024-05-04 16:01:32.373][self$setPropertyValue] Setting property "parsing.expr" to "KEGG_ID".
biodb.DEBUG[2024-05-04 16:01:32.373][self$setPropertyValue] Setting property "parsing.expr" to "PUBCHEM_COMPOUND_ID".
biodb.DEBUG[2024-05-04 16:01:32.373][self$setPropertyValue] Setting property "parsing.expr" to "SYSTEMATIC_NAME".
biodb.DEBUG[2024-05-04 16:01:32.373][self$setPropertyValue] Setting property "parsing.expr" to "MASS".
biodb.DEBUG[2024-05-04 16:01:32.373][self$setPropertyValue] Setting property "parsing.expr" to "FORMULA".
biodb.DEBUG[2024-05-04 16:01:32.373][self$setPropertyValue] Setting property "parsing.expr" to "COMMON_NAME".
biodb.DEBUG[2024-05-04 16:01:32.374][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-05-04 16:01:32.375][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-05-04 16:01:32.375][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-05-04 16:01:32.376][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-05-04 16:01:32.377][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:32.377][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:32.378][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-05-04 16:01:32.379][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-05-04 16:01:32.380][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-05-04 16:01:32.380][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-05-04 16:01:32.381][self$setPropertyValue] Setting property "urls" to "https://www.lipidmaps.org/data/".
biodb.DEBUG[2024-05-04 16:01:32.381][self$setPropertyValue] Setting property "urls" to "https://www.lipidmaps.org/databases/lmsd/".
biodb.DEBUG[2024-05-04 16:01:32.382][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-05-04 16:01:32.383][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-05-04 16:01:32.384][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-05-04 16:01:32.384][self$setPropertyValue]
biodb.DEBUG[2024-05-04 16:01:32.389][self$getEntryFields()$define] Define field lipidmaps.structure.id.
biodb.DEBUG[2024-05-04 16:01:32.390][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-05-04 16:01:32.412][initialize] Initialize connector lipidmaps.structure.
biodb.DEBUG[2024-05-04 16:01:32.413][initialize] Register connector lipidmaps.structure with the request scheduler
biodb.DEBUG[2024-05-04 16:01:32.417][private$bdb$getRequestScheduler()$re ...] Register connector lipidmaps.structure.
biodb.DEBUG[2024-05-04 16:01:32.421][private$addConnectorRules] Create new rule for URL "www.lipidmaps.org" of connector "lipidmaps.structure".
biodb.DEBUG[2024-05-04 16:01:32.424][self$setFrequency] t=1.000000, n=1.000000
biodb.DEBUG[2024-05-04 16:01:32.425][self$setFrequency] t=1.000000, n=1.000000
biodb.DEBUG[2024-05-04 16:01:32.426][rule$addConnector] Connector "lipidmaps.structure" is already listed in rule "www.lipidmaps.org".
biodb.DEBUG[2024-05-04 16:01:32.427][biodb$getFactory()$createConn] Creating new connector lipidmaps.structure for database class lipidmaps.structure .
biodb.INFO [2024-05-04 16:01:32.436][biodb::testThat]
biodb.INFO [2024-05-04 16:01:32.437][biodb::testThat] Running test function  test.entry.fields  (" Entry fields have a correct value ").
biodb.INFO [2024-05-04 16:01:32.438][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:01:32.438][biodb::testThat]
biodb.TRACE[2024-05-04 16:01:32.441][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbLipidmaps.Rcheck/biodbLipidmaps/testref/entry-lipidmaps.structure-LMFA00000001-content.tsv".
biodb.DEBUG[2024-05-04 16:01:32.443][biodb$getFactory()$createEntryFromCo ...] Creating LIPID MAPS Structure entries from 1 content(s).
biodb.DEBUG[2024-05-04 16:01:32.446][biodb$getFactory()$createEntryFromCo ...] Parsing 1 LIPID MAPS Structure entries.
biodb.DEBUG[2024-05-04 16:01:32.453][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:01:32.454][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:32.455][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:32.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:32.467][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:32.468][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:32.469][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:01:32.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:32.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:32.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.481][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:32.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:32.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.494][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:01:32.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:01:32.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.497][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-04 16:01:32.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-04 16:01:32.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.500][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-04 16:01:32.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-04 16:01:32.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.503][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:32.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:32.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.526][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:32.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:32.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.530][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:32.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:32.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.533][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:32.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:32.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.537][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:01:32.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:32.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.549][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:01:32.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:32.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.552][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:01:32.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:01:32.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.555][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:01:32.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:01:32.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.559][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:32.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:32.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.562][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:32.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:32.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.565][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-05-04 16:01:32.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:32.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.568][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:01:32.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:32.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.571][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:32.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:32.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.574][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:32.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:32.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.578][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-05-04 16:01:32.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:32.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.594][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:32.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:32.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.598][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:32.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:32.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.627][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:32.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:32.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.630][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:32.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:32.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.634][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:32.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:32.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.637][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:32.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:32.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.641][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:32.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:32.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:32.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:32.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.647][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:32.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:32.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:32.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:32.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.654][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:32.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:32.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:32.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:32.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.661][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:32.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:32.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.664][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:32.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:32.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:32.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:32.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:01:32.699][biodb$getFactory()$createEntryFromCo ...] Accession numbers: LMFA00000001.
biodb.TRACE[2024-05-04 16:01:32.701][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:01:32.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:01:32.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.704][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:01:32.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:01:32.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.707][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-04 16:01:32.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-04 16:01:32.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.711][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-04 16:01:32.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-04 16:01:32.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.727][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:32.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:32.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.741][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:32.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:32.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:32.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:32.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:32.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:32.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:32.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:32.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:32.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:32.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:32.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:32.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.766][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:32.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:32.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.770][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:32.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:32.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.773][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:32.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:32.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.777][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:32.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:32.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:32.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:32.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.790][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:32.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:32.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:32.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:32.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.797][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:32.798][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:32.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.800][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.800][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:32.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:32.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.812][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:32.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:32.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.815][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:32.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:32.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.819][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:32.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:32.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.822][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:32.823][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:32.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.824][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.825][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:32.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:32.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.835][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:32.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:32.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:32.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:32.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:32.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:32.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.850][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:32.851][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:32.852][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.852][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.853][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:32.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:32.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.864][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:01:32.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:01:32.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.867][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:01:32.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:01:32.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.870][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:01:32.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:01:32.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.874][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:01:32.875][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:01:32.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.876][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.877][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:01:32.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:01:32.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.887][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:32.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:32.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.890][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:32.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:32.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.894][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:32.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:32.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.897][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:32.898][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:32.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.899][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.900][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:32.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:32.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.913][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:32.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:32.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.916][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:32.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:32.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.919][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:32.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:32.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.923][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:32.924][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:32.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.925][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.926][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:32.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:32.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.937][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:32.938][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:32.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.939][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.944][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:32.945][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:32.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.947][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.951][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:01:32.952][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:01:32.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.954][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.958][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:32.959][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:32.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.961][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.965][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:32.966][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:32.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.968][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.972][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:32.973][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:32.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:32.975][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:32.993][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbLipidmaps.Rcheck/biodbLipidmaps/testref/entry-lipidmaps.structure-LMFA00000002-content.tsv".
biodb.DEBUG[2024-05-04 16:01:33.019][biodb$getFactory()$createEntryFromCo ...] Creating LIPID MAPS Structure entries from 1 content(s).
biodb.DEBUG[2024-05-04 16:01:33.020][biodb$getFactory()$createEntryFromCo ...] Parsing 1 LIPID MAPS Structure entries.
biodb.DEBUG[2024-05-04 16:01:33.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:01:33.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:33.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:33.028][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:33.029][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:33.030][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:33.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:01:33.034][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.041][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:01:33.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:01:33.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:01:33.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:01:33.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.048][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-04 16:01:33.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-04 16:01:33.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.052][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-04 16:01:33.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-04 16:01:33.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.054][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.055][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:33.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:33.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.058][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:33.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:33.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.061][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:33.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:33.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:33.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:33.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.068][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:01:33.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:33.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.071][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:01:33.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:33.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.074][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:01:33.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:01:33.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.078][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:01:33.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:01:33.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.081][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:33.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:33.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.084][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:33.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:33.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.088][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-05-04 16:01:33.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:33.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.091][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:01:33.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:33.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.094][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:33.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:33.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.097][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:33.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:33.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.101][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-05-04 16:01:33.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:33.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.104][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:33.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:33.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.107][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:33.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:33.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.118][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:33.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:33.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:01:33.140][biodb$getFactory()$createEntryFromCo ...] Accession numbers: LMFA00000002.
biodb.TRACE[2024-05-04 16:01:33.157][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:01:33.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:01:33.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.160][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:01:33.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:01:33.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.163][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-04 16:01:33.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-04 16:01:33.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.167][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-04 16:01:33.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-04 16:01:33.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.178][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:33.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:33.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.189][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.207][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:33.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:33.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.210][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:33.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:33.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.214][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:33.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:33.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.245][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.246][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.247][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.248][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.259][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:33.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:33.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.262][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:33.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:33.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.265][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:33.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:33.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.269][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:33.269][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:33.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.271][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.272][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:33.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:33.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.283][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:33.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:33.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:33.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:33.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:33.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:33.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.292][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:33.293][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:33.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.295][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:33.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:33.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.306][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:01:33.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:01:33.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.310][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:01:33.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:01:33.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.313][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:01:33.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:01:33.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.316][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:01:33.317][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:01:33.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.319][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.320][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:01:33.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:01:33.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:33.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:33.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:33.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:33.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:33.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:33.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.341][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:33.342][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:33.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.343][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.344][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:33.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:33.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.355][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:01:33.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:01:33.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.358][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:01:33.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:01:33.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:01:33.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:01:33.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.365][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:01:33.366][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:01:33.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.368][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.368][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:01:33.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:01:33.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.379][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:33.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:33.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.382][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:33.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:33.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.389][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:33.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:33.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.392][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:33.393][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:33.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.395][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.395][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:33.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:33.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.406][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.407][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.408][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.413][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:01:33.414][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:01:33.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.415][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.419][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:33.420][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:33.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.422][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.426][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:01:33.427][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:01:33.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.429][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.434][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:33.435][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:33.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.436][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.441][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:33.442][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:33.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.444][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.448][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:33.449][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:33.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.451][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.456][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbLipidmaps.Rcheck/biodbLipidmaps/testref/entry-lipidmaps.structure-LMFA08040013-content.tsv".
biodb.DEBUG[2024-05-04 16:01:33.457][biodb$getFactory()$createEntryFromCo ...] Creating LIPID MAPS Structure entries from 1 content(s).
biodb.DEBUG[2024-05-04 16:01:33.458][biodb$getFactory()$createEntryFromCo ...] Parsing 1 LIPID MAPS Structure entries.
biodb.DEBUG[2024-05-04 16:01:33.459][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:01:33.460][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:33.461][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:33.465][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:33.466][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:33.467][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:33.468][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:01:33.471][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.478][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:01:33.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:01:33.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.482][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:01:33.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:01:33.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.485][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-04 16:01:33.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-04 16:01:33.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.489][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-04 16:01:33.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-04 16:01:33.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.492][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-04 16:01:33.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-04 16:01:33.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.495][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-04 16:01:33.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-04 16:01:33.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:33.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:33.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.502][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:33.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:33.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.505][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:33.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:33.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:33.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:33.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.512][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:01:33.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:33.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.515][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:01:33.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:33.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.519][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:01:33.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:01:33.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.522][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:01:33.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:01:33.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.525][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:33.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:33.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.529][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:33.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:33.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.536][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-05-04 16:01:33.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:33.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.540][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:01:33.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:33.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.543][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:33.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:33.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.546][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:33.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:33.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.549][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-05-04 16:01:33.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:33.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.553][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:33.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:33.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.556][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:33.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:33.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.559][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:33.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:33.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.563][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:33.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:33.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.566][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:33.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:33.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.569][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:33.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:33.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.573][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:33.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:33.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.579][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:33.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:33.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.583][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.593][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.599][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:01:33.603][biodb$getFactory()$createEntryFromCo ...] Accession numbers: LMFA08040013.
biodb.TRACE[2024-05-04 16:01:33.604][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:01:33.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:01:33.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.608][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:01:33.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:01:33.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.611][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-04 16:01:33.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-04 16:01:33.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.614][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-04 16:01:33.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-04 16:01:33.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.625][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:33.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:33.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.632][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.639][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.650][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.653][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:33.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:33.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.656][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:33.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:33.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.659][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:33.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:33.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.672][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.682][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.683][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.685][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.685][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.696][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:33.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:33.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.699][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:33.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:33.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.703][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:33.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:33.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.706][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:33.707][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:33.708][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.708][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.709][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:33.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:33.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:33.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:33.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.723][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:33.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:33.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:33.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:33.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.730][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:33.731][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:33.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.732][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.733][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:33.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:33.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.744][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:01:33.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:01:33.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.747][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:01:33.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:01:33.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.750][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:01:33.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:01:33.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.754][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:01:33.754][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:01:33.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.756][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.757][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:01:33.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:01:33.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.767][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-04 16:01:33.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-04 16:01:33.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.771][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-04 16:01:33.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-04 16:01:33.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.774][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-04 16:01:33.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-04 16:01:33.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.777][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-04 16:01:33.778][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-04 16:01:33.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.780][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.780][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-04 16:01:33.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-04 16:01:33.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:33.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:33.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.794][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:33.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:33.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:33.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:33.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.801][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:33.802][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:33.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.803][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.805][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:33.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:33.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.821][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-04 16:01:33.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-04 16:01:33.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.824][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-04 16:01:33.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-04 16:01:33.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.827][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-04 16:01:33.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-04 16:01:33.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.830][ef$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-04 16:01:33.831][ef$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-04 16:01:33.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.832][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.833][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-04 16:01:33.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-04 16:01:33.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.843][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:33.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:33.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.846][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:33.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:33.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.849][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:33.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:33.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.852][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:33.853][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:33.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.855][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.855][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:33.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:33.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:01:33.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:01:33.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:01:33.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:01:33.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.872][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:01:33.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:01:33.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.875][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:01:33.876][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:01:33.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.878][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.878][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:01:33.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:01:33.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.888][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:33.889][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:33.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.891][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.895][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:01:33.896][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:01:33.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.898][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.902][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:33.903][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:33.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.905][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.909][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:01:33.910][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:01:33.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.911][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.916][ef$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-04 16:01:33.916][ef$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-04 16:01:33.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.918][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.922][ef$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-04 16:01:33.923][ef$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-04 16:01:33.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.924][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.929][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:33.930][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:33.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.931][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.935][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:33.936][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:33.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.938][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:33.942][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:33.943][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:33.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:33.945][ef$get] fields variable is a list.
biodb.INFO [2024-05-04 16:01:33.952][biodb::testThat]
biodb.INFO [2024-05-04 16:01:33.953][biodb::testThat] Running test function  test.rt.unit  (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-05-04 16:01:33.954][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:01:33.954][biodb::testThat]
biodb.DEBUG[2024-05-04 16:01:33.961][private$loadEntries] Creating entries from ids [3]: "LMFA00000001, LMFA00000002, LMFA08040013".
biodb.DEBUG[2024-05-04 16:01:33.966][conn$getEntryContent] Get LIPID MAPS Structure entry content(s) for 3 id(s)...
biodb.TRACE[2024-05-04 16:01:33.969][cch$loadFileContent] Trying to load 3 files from cache: [3]: "LMFA00000001, LMFA00000002, LMFA08040013".
biodb.INFO [2024-05-04 16:01:33.970][self$getFolderPath] Create cache folder "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b" for "lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b".
biodb.TRACE[2024-05-04 16:01:33.971][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-05-04 16:01:33.972][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-04 16:01:33.973][conn$getEntryContent] 0 LIPID MAPS Structure entry content(s) loaded from cache.
biodb.DEBUG[2024-05-04 16:01:33.974][conn$getEntryContent] 3 entry content(s) need to be fetched from LIPID MAPS Structure database "https://www.lipidmaps.org/data/".
biodb.DEBUG[2024-05-04 16:01:33.975][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-04 16:01:33.975][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-05-04 16:01:33.990][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:01:33.991][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:33.991][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:33.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:33.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:33.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:33.998][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:33.999][scheduler$sendRequest] Getting content of get URL request "https://www.lipidmaps.org/databases/lmsd/LMFA00000001?format=tsv".
biodb.DEBUG[2024-05-04 16:01:34.015][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:01:34.016][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:01:34.017][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/LMFA00000001?format=tsv".
biodb.TRACE[2024-05-04 16:01:35.483][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/databases/lmsd/LMFA00000001?format=tsv).
biodb.DEBUG[2024-05-04 16:01:36.125][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:01:36.144][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f441f4b59d8c1fbcb63f4f502d20d459.content"
biodb.TRACE[2024-05-04 16:01:36.157][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f441f4b59d8c1fbcb63f4f502d20d459.request"
biodb.DEBUG[2024-05-04 16:01:36.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:01:36.159][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:36.160][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:36.165][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:36.166][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:36.167][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:36.167][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:36.184][scheduler$sendRequest] Getting content of get URL request "https://www.lipidmaps.org/databases/lmsd/LMFA00000002?format=tsv".
biodb.DEBUG[2024-05-04 16:01:36.197][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:01:36.198][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:01:36.218][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/LMFA00000002?format=tsv".
biodb.TRACE[2024-05-04 16:01:37.188][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/databases/lmsd/LMFA00000002?format=tsv).
biodb.DEBUG[2024-05-04 16:01:37.843][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:01:37.845][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/a989db4a318873c598872a885a94e78c.content"
biodb.TRACE[2024-05-04 16:01:37.848][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/a989db4a318873c598872a885a94e78c.request"
biodb.DEBUG[2024-05-04 16:01:37.849][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:01:37.850][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:37.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:37.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:37.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:37.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:37.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:01:37.859][scheduler$sendRequest] Getting content of get URL request "https://www.lipidmaps.org/databases/lmsd/LMFA08040013?format=tsv".
biodb.DEBUG[2024-05-04 16:01:37.861][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:01:37.862][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:01:37.863][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/LMFA08040013?format=tsv".
biodb.TRACE[2024-05-04 16:01:38.789][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/databases/lmsd/LMFA08040013?format=tsv).
biodb.DEBUG[2024-05-04 16:01:39.423][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:01:39.424][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/0fdeb15a49cfc75bfed9dd3f524ffa41.content"
biodb.TRACE[2024-05-04 16:01:39.427][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/0fdeb15a49cfc75bfed9dd3f524ffa41.request"
biodb.TRACE[2024-05-04 16:01:39.430][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/LMFA00000001.tsv, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/LMFA00000002.tsv, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/LMFA08040013.tsv"
biodb.DEBUG[2024-05-04 16:01:39.431][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-04 16:01:39.433][self$createEntryFromContent] Creating LIPID MAPS Structure entries from 3 content(s).
biodb.DEBUG[2024-05-04 16:01:39.434][self$createEntryFromContent] Parsing 3 LIPID MAPS Structure entries.
biodb.DEBUG[2024-05-04 16:01:39.435][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:01:39.436][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:39.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:39.441][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:39.442][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:39.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:39.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:01:39.446][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:01:39.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:01:39.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.457][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:01:39.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:01:39.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.460][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-04 16:01:39.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-04 16:01:39.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.463][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-04 16:01:39.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-04 16:01:39.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.467][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:39.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:39.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.470][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:39.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:39.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.473][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:39.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:39.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:39.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:39.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.480][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:01:39.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:39.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.483][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:01:39.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:39.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.487][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:01:39.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:01:39.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.491][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:01:39.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:01:39.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.494][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:39.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:39.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.497][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:39.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:39.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.501][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-05-04 16:01:39.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:39.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.513][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:01:39.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:39.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.516][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:39.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:39.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.520][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:39.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:39.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.523][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-05-04 16:01:39.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:39.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.526][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:39.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:39.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.530][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:39.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:39.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.533][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:39.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:39.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.536][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:39.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:39.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.540][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:39.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:39.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.543][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:39.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:39.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.546][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:39.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:39.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.553][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:39.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:39.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:01:39.566][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:01:39.567][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:39.568][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:39.572][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:39.573][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:39.574][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:39.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:01:39.578][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.585][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:01:39.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:01:39.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.588][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:01:39.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:01:39.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.591][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-04 16:01:39.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-04 16:01:39.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.595][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-04 16:01:39.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-04 16:01:39.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.598][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:39.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:39.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.602][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:39.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:39.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:39.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:39.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.608][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:39.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:39.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.612][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:01:39.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:39.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.619][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:01:39.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:39.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.622][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:01:39.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:01:39.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.625][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:01:39.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:01:39.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.628][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:39.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:39.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.631][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:39.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:39.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.634][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-05-04 16:01:39.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:39.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.637][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:01:39.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:39.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.641][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:39.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:39.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.644][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:39.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:39.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.647][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-05-04 16:01:39.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:39.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.650][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:39.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:39.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.654][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:39.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:39.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.660][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:39.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:39.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.663][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.669][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:01:39.672][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:01:39.673][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:01:39.673][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:01:39.678][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:01:39.679][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:01:39.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:01:39.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:01:39.683][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.690][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:01:39.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:01:39.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:01:39.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:01:39.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.697][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-04 16:01:39.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-04 16:01:39.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.700][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-04 16:01:39.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-04 16:01:39.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.703][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-04 16:01:39.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-04 16:01:39.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.707][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-04 16:01:39.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-04 16:01:39.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:39.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:39.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:39.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:01:39.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:39.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:39.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:39.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:01:39.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.727][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:01:39.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:39.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.730][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:01:39.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:39.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.734][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:01:39.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:01:39.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.737][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:01:39.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:01:39.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.740][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:39.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:39.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.744][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:39.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:39.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.747][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-05-04 16:01:39.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:39.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.750][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:01:39.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:39.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.754][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:39.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:39.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.757][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:39.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:39.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.760][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-05-04 16:01:39.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:39.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.763][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:39.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:39.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.766][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:39.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:39.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.769][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:39.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:39.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.773][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:39.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:39.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.776][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:39.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:39.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.779][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:39.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:39.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.782][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:39.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:39.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.785][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.788][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:39.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:01:39.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.791][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.797][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.810][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:01:39.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:01:39.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:01:39.833][self$createEntryFromContent] Accession numbers: LMFA00000001, LMFA00000002, LMFA08040013.
biodb.TRACE[2024-05-04 16:01:39.834][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-04 16:01:39.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-04 16:01:39.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.837][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-04 16:01:39.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-04 16:01:39.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.840][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-04 16:01:39.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-04 16:01:39.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.847][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-04 16:01:39.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-04 16:01:39.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.850][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-04 16:01:39.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-04 16:01:39.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.853][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-04 16:01:39.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-04 16:01:39.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.860][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-05-04 16:01:39.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-05-04 16:01:39.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.863][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-05-04 16:01:39.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-05-04 16:01:39.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.866][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-05-04 16:01:39.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-05-04 16:01:39.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-04 16:01:39.877][biodb::testThat]
biodb.INFO [2024-05-04 16:01:39.877][biodb::testThat] Running test function  test.searchForEntries  (" We can search for an entry by searchable field ").
biodb.INFO [2024-05-04 16:01:39.878][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:01:39.879][biodb::testThat]
biodb.TRACE[2024-05-04 16:01:39.881][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:39.882][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:39.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.884][ef$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:01:39.885][function(conn, opt)] Testing searchForEntries() with entry "LMFA00000001" and field "name".
biodb.TRACE[2024-05-04 16:01:39.907][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:39.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:39.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.910][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:39.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:39.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:39.913][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:39.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:39.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:39.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:01:39.919][function(conn, opt)] With value "2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2024-05-04 16:01:39.921][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2024-05-04 16:01:39.923][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:01:39.928][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:01:39.929][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride".
biodb.TRACE[2024-05-04 16:01:40.559][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride).
biodb.DEBUG[2024-05-04 16:01:41.184][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:01:41.186][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.content"
biodb.TRACE[2024-05-04 16:01:41.189][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.request"
biodb.DEBUG[2024-05-04 16:01:41.191][function(conn, opt)] With found IDs [1]: "LMFA00000001".
biodb.TRACE[2024-05-04 16:01:41.203][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:41.204][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:41.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:41.205][ef$get] fields variable is a list.
biodb.INFO [2024-05-04 16:01:41.209][biodb::testThat]
biodb.INFO [2024-05-04 16:01:41.210][biodb::testThat] Running test function  test.searchByName  (" We can search for an entry by name. ").
biodb.INFO [2024-05-04 16:01:41.211][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:01:41.212][biodb::testThat]
biodb.TRACE[2024-05-04 16:01:41.233][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:41.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:41.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:41.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:41.236][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:41.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:41.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:41.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:41.239][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:41.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:41.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:41.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:01:41.318][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2024-05-04 16:01:41.320][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:01:41.333][cch$loadFileContent] Trying to load 1 files from cache: [1]: "e8702bf6dc5a5afd048f747914fd7a6a".
biodb.TRACE[2024-05-04 16:01:41.335][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:01:41.337][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.content".
biodb.INFO [2024-05-04 16:01:41.352][biodb::testThat]
biodb.INFO [2024-05-04 16:01:41.353][biodb::testThat] Running test function  testEntryLoading  (" We can load an entry from the database. ").
biodb.INFO [2024-05-04 16:01:41.354][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:01:41.355][biodb::testThat]
biodb.TRACE[2024-05-04 16:01:41.364][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:01:41.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:01:41.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:41.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:41.368][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:01:41.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:01:41.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:41.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:41.371][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-04 16:01:41.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-04 16:01:41.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:41.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:41.374][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-04 16:01:41.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-04 16:01:41.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:41.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:41.406][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:01:41.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:01:41.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:41.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:41.410][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-05-04 16:01:41.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-05-04 16:01:41.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:41.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:41.413][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-05-04 16:01:41.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-05-04 16:01:41.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:41.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:41.416][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-05-04 16:01:41.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-05-04 16:01:41.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:41.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-04 16:01:41.425][biodb::testThat]
biodb.INFO [2024-05-04 16:01:41.425][biodb::testThat] Running test function  test.entry.page.url  (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-05-04 16:01:41.426][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:01:41.427][biodb::testThat]
biodb.INFO [2024-05-04 16:01:41.435][biodb::testThat]
biodb.INFO [2024-05-04 16:01:41.436][biodb::testThat] Running test function  test.entry.image.url  (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-05-04 16:01:41.437][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:01:41.438][biodb::testThat]
biodb.INFO [2024-05-04 16:01:41.444][biodb::testThat]
biodb.INFO [2024-05-04 16:01:41.445][biodb::testThat] Running test function  test.entry.page.url.download  (" The entry page URL can be downloaded. ").
biodb.INFO [2024-05-04 16:01:41.446][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:01:41.447][biodb::testThat]
biodb.DEBUG[2024-05-04 16:01:41.450][function(conn, opt)] Trying to download "https://www.lipidmaps.org/data?LMID=LMFA00000001".
biodb.DEBUG[2024-05-04 16:01:42.230][getUrlContent] Use RCurl for downloading content of URL https://www.lipidmaps.org/data?LMID=LMFA00000001.
biodb.INFO [2024-05-04 16:01:42.644][biodb::testThat]
biodb.INFO [2024-05-04 16:01:42.645][biodb::testThat] Running test function  test.entry.image.url.download  (" The entry image URL can be downloaded. ").
biodb.INFO [2024-05-04 16:01:42.646][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:01:42.647][biodb::testThat]
biodb.TRACE[2024-05-04 16:01:42.652][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:42.653][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:42.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:42.655][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:42.656][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:42.657][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:42.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:42.658][ef$get] fields variable is a list.
biodb.INFO [2024-05-04 16:01:42.660][biodb::testThat]
biodb.INFO [2024-05-04 16:01:42.661][biodb::testThat] Running test function  test.searchCompound  (" We can search for a compound ").
biodb.INFO [2024-05-04 16:01:42.661][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:01:42.662][biodb::testThat]
biodb.TRACE[2024-05-04 16:01:42.679][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:42.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:42.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:42.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:42.683][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:42.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:42.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:42.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:42.686][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:01:42.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:01:42.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:42.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:01:42.750][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2024-05-04 16:01:42.753][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:01:42.754][cch$loadFileContent] Trying to load 1 files from cache: [1]: "e8702bf6dc5a5afd048f747914fd7a6a".
biodb.TRACE[2024-05-04 16:01:42.755][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:01:42.756][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.content".
biodb.DEBUG[2024-05-04 16:01:42.820][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride".
biodb.DEBUG[2024-05-04 16:01:42.823][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:01:42.824][cch$loadFileContent] Trying to load 1 files from cache: [1]: "e8702bf6dc5a5afd048f747914fd7a6a".
biodb.TRACE[2024-05-04 16:01:42.825][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:01:42.826][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/e8702bf6dc5a5afd048f747914fd7a6a.content".
biodb.TRACE[2024-05-04 16:01:42.839][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-04 16:01:42.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-04 16:01:42.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:42.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:42.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:01:42.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:01:42.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:42.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:42.857][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:42.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:42.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:42.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:42.860][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:42.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:42.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:42.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:42.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:42.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:42.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:42.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:42.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:42.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:42.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:42.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:01:42.891][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:42.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:01:42.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:01:42.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:01:42.900][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=1e-06".
biodb.DEBUG[2024-05-04 16:01:42.903][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:01:42.903][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:01:42.905][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=1e-06".
biodb.TRACE[2024-05-04 16:01:47.070][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=1e-06).
biodb.DEBUG[2024-05-04 16:01:58.122][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:01:58.124][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/304383a7dc8c451be84009e31d831359.content"
biodb.TRACE[2024-05-04 16:01:58.159][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/304383a7dc8c451be84009e31d831359.request"
biodb.DEBUG[2024-05-04 16:01:59.032][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride&ExactMass=626.491025&ExactMassOffSet=1e-06".
biodb.DEBUG[2024-05-04 16:01:59.035][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:01:59.036][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:01:59.038][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride&ExactMass=626.491025&ExactMassOffSet=1e-06".
biodb.TRACE[2024-05-04 16:01:59.677][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride&ExactMass=626.491025&ExactMassOffSet=1e-06).
biodb.DEBUG[2024-05-04 16:02:00.325][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:02:00.327][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/7f71825f1888a7b29e4b8407502d21e3.content"
biodb.TRACE[2024-05-04 16:02:00.330][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/7f71825f1888a7b29e4b8407502d21e3.request"
biodb.DEBUG[2024-05-04 16:02:00.349][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride&ExactMass=626.491026&ExactMassOffSet=2e-06".
biodb.DEBUG[2024-05-04 16:02:00.351][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:00.352][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:00.354][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride&ExactMass=626.491026&ExactMassOffSet=2e-06".
biodb.TRACE[2024-05-04 16:02:00.984][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&Name=2-methoxy-12-methyloctadec-17-en-5-ynoyl%20anhydride&ExactMass=626.491026&ExactMassOffSet=2e-06).
biodb.DEBUG[2024-05-04 16:02:01.754][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:02:01.756][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/fd41c675dd237f33cdaafcbb15058c54.content"
biodb.TRACE[2024-05-04 16:02:01.760][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/fd41c675dd237f33cdaafcbb15058c54.request"
biodb.TRACE[2024-05-04 16:02:01.776][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-04 16:02:01.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-04 16:02:01.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:01.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-04 16:02:01.785][biodb::testThat]
biodb.INFO [2024-05-04 16:02:01.786][biodb::testThat] Running test function  test_annotateMzValues_input_vector  (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-05-04 16:02:01.787][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:02:01.788][biodb::testThat]
biodb.TRACE[2024-05-04 16:02:01.790][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-04 16:02:01.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-04 16:02:01.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:01.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:01.793][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-04 16:02:01.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-04 16:02:01.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:01.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:01.796][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-04 16:02:01.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-04 16:02:01.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:01.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:01.799][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:01.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:01.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:01.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:01.802][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:01.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:01.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:01.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:01.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:01.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:01.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:01.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:01.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:01.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:01.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:01.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:01.811][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:01.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:01.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:01.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:01.814][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:01.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:01.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:01.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:01.817][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:01.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:01.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:01.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:01.821][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:01.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:01.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:01.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:01.824][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:01.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:01.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:01.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:01.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:01.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:01.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:01.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:01.831][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:01.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:01.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:01.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:01.834][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:01.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:01.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:01.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:01.837][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:01.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:01.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:01.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:01.841][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:01.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:01.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:01.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:01.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:01.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:01.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:01.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:01.850][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:01.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:01.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:01.856][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:01.857][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:01.858][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:01.859][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:01.861][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2024-05-04 16:02:01.864][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:01.865][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:01.867][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.TRACE[2024-05-04 16:02:05.806][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01).
biodb.DEBUG[2024-05-04 16:02:16.583][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:02:16.592][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content"
biodb.TRACE[2024-05-04 16:02:16.626][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.request"
biodb.DEBUG[2024-05-04 16:02:17.451][private$loadEntries] Creating entries from ids [1]: "LMFA00000003".
biodb.DEBUG[2024-05-04 16:02:17.484][conn$getEntryContent] Get LIPID MAPS Structure entry content(s) for 1 id(s)...
biodb.TRACE[2024-05-04 16:02:17.485][cch$loadFileContent] Trying to load 1 files from cache: [1]: "LMFA00000003".
biodb.TRACE[2024-05-04 16:02:17.486][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-05-04 16:02:17.487][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-05-04 16:02:17.488][conn$getEntryContent] 0 LIPID MAPS Structure entry content(s) loaded from cache.
biodb.DEBUG[2024-05-04 16:02:17.489][conn$getEntryContent] 1 entry content(s) need to be fetched from LIPID MAPS Structure database "https://www.lipidmaps.org/data/".
biodb.DEBUG[2024-05-04 16:02:17.490][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-05-04 16:02:17.490][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-05-04 16:02:17.500][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:17.501][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:17.502][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:17.507][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:17.508][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:17.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:17.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:17.510][scheduler$sendRequest] Getting content of get URL request "https://www.lipidmaps.org/databases/lmsd/LMFA00000003?format=tsv".
biodb.DEBUG[2024-05-04 16:02:17.512][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:17.513][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:17.514][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/databases/lmsd/LMFA00000003?format=tsv".
biodb.TRACE[2024-05-04 16:02:18.140][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/databases/lmsd/LMFA00000003?format=tsv).
biodb.DEBUG[2024-05-04 16:02:18.738][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:02:18.740][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f88961343869f5da5bc09cbcc0e6185e.content"
biodb.TRACE[2024-05-04 16:02:18.743][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f88961343869f5da5bc09cbcc0e6185e.request"
biodb.TRACE[2024-05-04 16:02:18.745][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/LMFA00000003.tsv"
biodb.DEBUG[2024-05-04 16:02:18.746][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-05-04 16:02:18.747][self$createEntryFromContent] Creating LIPID MAPS Structure entries from 1 content(s).
biodb.DEBUG[2024-05-04 16:02:18.748][self$createEntryFromContent] Parsing 1 LIPID MAPS Structure entries.
biodb.DEBUG[2024-05-04 16:02:18.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:18.750][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:18.751][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:18.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:18.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:18.757][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:18.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:18.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:18.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:18.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.764][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:18.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:18.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:02:18.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:02:18.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.770][self$getBiodb()$getEntryFields()$get] Asked field names are: hmdb.metabolites.id.
biodb.TRACE[2024-05-04 16:02:18.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: hmdb.metabolites.id.
biodb.TRACE[2024-05-04 16:02:18.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.773][self$getBiodb()$getEntryFields()$get] Asked field names are: kegg.compound.id.
biodb.TRACE[2024-05-04 16:02:18.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: kegg.compound.id.
biodb.TRACE[2024-05-04 16:02:18.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.777][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:18.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:18.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.780][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:18.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:02:18.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.783][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:18.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:18.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.786][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:18.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:02:18.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.790][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:18.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:18.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.793][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-05-04 16:02:18.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:18.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.796][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:18.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:18.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.800][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:02:18.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:02:18.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.803][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:18.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:18.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.807][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:18.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:18.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.810][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-05-04 16:02:18.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:18.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.814][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-05-04 16:02:18.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:18.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.817][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:18.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:18.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.821][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:02:18.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:18.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.825][self$getBiodb()$getEntryFields()$get] Asked field names are: SYNONYMS.
biodb.TRACE[2024-05-04 16:02:18.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:02:18.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.828][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.831][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:18.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:18.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.838][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:18.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:18.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.845][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:18.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:18.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.848][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:18.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:18.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.851][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:18.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:18.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:18.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:18.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.858][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:02:18.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:02:18.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:18.861][self$createEntryFromContent] Accession numbers: LMFA00000003.
biodb.DEBUG[2024-05-04 16:02:18.870][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:18.871][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:18.872][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:18.873][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:18.878][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:18.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:18.879][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:18.880][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:18.881][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.885][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.888][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:18.889][private$selectFields]
biodb.TRACE[2024-05-04 16:02:18.890][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:18.891][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:18.892][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:18.893][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.893][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.895][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.896][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.897][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.898][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.899][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:18.900][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:18.901][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.902][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.903][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.904][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:02:18.905][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.922][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.925][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.935][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-05-04 16:02:18.936][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:18.936][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:18.937][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:18.942][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:18.942][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:18.943][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:18.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:18.945][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.948][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.951][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:18.951][private$selectFields]
biodb.TRACE[2024-05-04 16:02:18.952][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:18.953][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:18.954][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:18.954][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.955][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.957][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.958][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.958][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.960][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.961][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:18.962][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:18.963][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.963][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.965][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.966][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:02:18.966][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.969][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.972][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.976][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-05-04 16:02:18.977][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:18.977][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:18.978][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:18.982][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:18.983][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:18.984][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:18.984][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:18.985][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.988][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.991][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:18.992][private$selectFields]
biodb.TRACE[2024-05-04 16:02:18.993][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:18.993][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:18.994][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:18.995][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.996][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:18.997][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:18.998][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:18.999][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:19.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:19.000][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:19.001][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:19.002][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:19.002][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:19.003][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:19.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:19.005][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:19.005][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:02:19.006][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:19.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:19.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:19.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:19.009][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:19.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:19.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:19.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:19.012][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:19.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:19.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:19.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:19.015][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-05-04 16:02:19.016][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:19.017][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:19.020][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:19.020][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:19.021][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:19.025][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:19.026][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:19.027][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:19.028][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:19.030][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2024-05-04 16:02:19.033][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:19.033][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:19.035][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.TRACE[2024-05-04 16:02:23.027][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01).
biodb.DEBUG[2024-05-04 16:02:34.126][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:02:34.128][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content"
biodb.TRACE[2024-05-04 16:02:34.169][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.request"
biodb.DEBUG[2024-05-04 16:02:35.120][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:35.136][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:35.137][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:35.138][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:35.143][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:35.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:35.144][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:35.145][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:35.154][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.157][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.174][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:35.175][private$selectFields]
biodb.TRACE[2024-05-04 16:02:35.176][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:35.176][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:35.177][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:35.178][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.179][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.180][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.181][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.181][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.183][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.184][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:35.191][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:35.192][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.193][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.194][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.195][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:02:35.196][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.199][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.202][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.205][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-05-04 16:02:35.206][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:35.206][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:35.207][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:35.212][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:35.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:35.213][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:35.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:35.215][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.218][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.221][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:35.222][private$selectFields]
biodb.TRACE[2024-05-04 16:02:35.222][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:35.223][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:35.224][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:35.224][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.225][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.227][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.227][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.228][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.230][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.230][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:35.231][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:35.232][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.233][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.235][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.235][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:02:35.236][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.239][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.242][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.246][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-05-04 16:02:35.246][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:35.247][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:35.248][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:35.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:35.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:35.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:35.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:35.255][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.258][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.262][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:35.262][private$selectFields]
biodb.TRACE[2024-05-04 16:02:35.263][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:35.264][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:35.265][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:35.265][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.266][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.267][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.268][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.269][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.270][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.271][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:35.272][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:35.273][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.273][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.275][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.276][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:02:35.277][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.280][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.283][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:35.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:35.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:35.286][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-05-04 16:02:35.287][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:35.288][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:02:35.289][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:35.290][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:35.291][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:35.295][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:35.296][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:35.297][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:35.297][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:35.300][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2024-05-04 16:02:35.302][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:35.303][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:35.305][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.TRACE[2024-05-04 16:02:39.245][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01).
biodb.DEBUG[2024-05-04 16:02:50.114][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:02:50.116][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content"
biodb.TRACE[2024-05-04 16:02:50.152][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.request"
biodb.DEBUG[2024-05-04 16:02:50.974][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:02:50.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:50.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:50.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:50.981][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:50.982][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:50.983][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:50.983][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:50.984][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:50.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:50.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.987][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:50.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:50.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.990][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:50.991][private$selectFields]
biodb.TRACE[2024-05-04 16:02:50.992][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:50.993][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:50.993][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:50.994][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:50.995][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:50.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:50.997][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:50.997][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:50.998][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:50.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.000][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.000][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:51.001][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:51.002][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.003][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.004][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.005][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:02:51.006][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.009][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.012][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.015][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-05-04 16:02:51.016][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:51.016][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:51.017][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:51.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:51.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:51.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:51.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:51.025][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.028][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.031][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:51.032][private$selectFields]
biodb.TRACE[2024-05-04 16:02:51.032][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:51.033][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:51.034][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:51.035][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.035][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.037][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.038][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.039][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.040][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.041][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:51.042][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:51.042][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.043][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.045][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.045][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:02:51.048][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.051][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.054][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.057][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-05-04 16:02:51.058][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:51.059][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:51.060][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:51.064][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:51.065][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:51.066][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:51.067][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:02:51.068][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.071][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.074][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:51.075][private$selectFields]
biodb.TRACE[2024-05-04 16:02:51.075][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:02:51.076][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:02:51.077][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:51.077][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.078][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.080][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.080][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.081][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.082][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.083][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:51.084][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:02:51.085][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.086][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.087][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.088][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:02:51.088][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.091][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.094][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:02:51.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.097][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-05-04 16:02:51.098][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:02:51.099][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-05-04 16:02:51.106][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-04 16:02:51.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-04 16:02:51.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.109][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-04 16:02:51.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-04 16:02:51.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.112][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-04 16:02:51.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-04 16:02:51.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-04 16:02:51.118][biodb::testThat]
biodb.INFO [2024-05-04 16:02:51.119][biodb::testThat] Running test function  test_annotateMzValues_ppm_tol  (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-05-04 16:02:51.120][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:02:51.120][biodb::testThat]
biodb.TRACE[2024-05-04 16:02:51.123][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-04 16:02:51.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-04 16:02:51.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.125][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-04 16:02:51.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-04 16:02:51.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.129][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-04 16:02:51.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-04 16:02:51.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.132][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.135][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.138][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:02:51.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.141][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.144][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.147][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.150][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.154][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.157][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.160][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.163][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.172][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:02:51.175][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:02:51.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:02:51.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:02:51.236][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:02:51.237][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:02:51.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:02:51.242][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:02:51.243][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:02:51.243][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:02:51.244][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:02:51.247][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.009397365375".
biodb.DEBUG[2024-05-04 16:02:51.249][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:02:51.250][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:02:51.252][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.009397365375".
biodb.TRACE[2024-05-04 16:02:55.246][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.009397365375).
biodb.DEBUG[2024-05-04 16:03:06.183][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:03:06.185][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/5652f5994fce967a05a065a71bac3ed6.content"
biodb.TRACE[2024-05-04 16:03:06.224][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/5652f5994fce967a05a065a71bac3ed6.request"
biodb.DEBUG[2024-05-04 16:03:07.059][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:03:07.061][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:03:07.062][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:03:07.062][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:03:07.067][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:03:07.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:03:07.069][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:03:07.069][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:03:07.070][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:07.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:07.074][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:07.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:07.077][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:07.078][private$selectFields]
biodb.TRACE[2024-05-04 16:03:07.078][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:03:07.079][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:03:07.080][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:07.081][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.082][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:07.083][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:07.084][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.085][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:07.086][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:07.087][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:07.088][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:07.089][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.090][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:07.091][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:07.092][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:03:07.093][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:07.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:07.096][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:07.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:07.099][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:07.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:07.102][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-05-04 16:03:07.103][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:03:07.104][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:03:07.105][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:03:07.109][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:03:07.110][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:03:07.111][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:03:07.112][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:03:07.112][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:07.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:07.116][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:07.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:07.119][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:07.120][private$selectFields]
biodb.TRACE[2024-05-04 16:03:07.120][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:03:07.121][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:03:07.122][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:07.123][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.123][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:07.125][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:07.126][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.127][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:07.128][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:07.129][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:07.130][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:07.131][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.131][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:07.133][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:07.134][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:03:07.135][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:07.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:07.138][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:07.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:07.141][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:07.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:07.145][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-05-04 16:03:07.146][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:03:07.146][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:03:07.147][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:03:07.152][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:03:07.153][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:03:07.153][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:03:07.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:03:07.155][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:07.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:07.158][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:07.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:07.161][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:07.162][private$selectFields]
biodb.TRACE[2024-05-04 16:03:07.163][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:03:07.164][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:03:07.165][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:07.165][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.166][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:07.168][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:07.169][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.170][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:07.171][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:07.172][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:07.173][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:07.174][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.174][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:07.176][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:07.177][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:03:07.178][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:07.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:07.181][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:07.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:07.184][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:07.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:07.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:07.188][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-05-04 16:03:07.188][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:03:07.189][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:03:07.191][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:03:07.191][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:03:07.192][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:03:07.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:03:07.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:03:07.198][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:03:07.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:03:07.201][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.00412759911".
biodb.DEBUG[2024-05-04 16:03:07.204][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:03:07.205][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:03:07.206][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.00412759911".
biodb.TRACE[2024-05-04 16:03:11.325][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.00412759911).
biodb.DEBUG[2024-05-04 16:03:22.591][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:03:22.593][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/caf6ace8482be3630c2e179e272c9f63.content"
biodb.TRACE[2024-05-04 16:03:22.650][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/caf6ace8482be3630c2e179e272c9f63.request"
biodb.DEBUG[2024-05-04 16:03:23.434][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:03:23.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:03:23.437][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:03:23.437][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:03:23.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:03:23.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:03:23.443][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:03:23.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:03:23.445][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:23.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:23.448][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:23.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:23.451][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:23.451][private$selectFields]
biodb.TRACE[2024-05-04 16:03:23.452][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:03:23.453][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:03:23.453][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:23.454][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.455][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:23.456][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:23.457][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.458][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:23.459][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:23.460][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:23.460][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:23.461][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.462][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:23.464][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:23.464][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:03:23.465][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:23.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:23.468][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:23.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:23.471][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:23.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:23.474][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-05-04 16:03:23.475][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:03:23.476][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:03:23.476][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:03:23.481][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:03:23.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:03:23.482][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:03:23.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:03:23.484][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:23.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:23.487][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:23.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:23.489][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:23.490][private$selectFields]
biodb.TRACE[2024-05-04 16:03:23.491][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:03:23.491][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:03:23.492][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:23.493][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.493][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:23.495][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:23.495][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.496][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:23.498][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:23.498][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:23.499][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:23.500][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.501][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.501][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:23.502][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:23.503][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:03:23.503][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:23.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:23.506][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:23.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:23.509][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:23.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:23.512][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-05-04 16:03:23.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:03:23.513][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:03:23.514][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:03:23.519][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:03:23.520][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:03:23.520][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:03:23.521][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:03:23.522][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:23.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:23.525][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:23.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:23.527][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:23.528][private$selectFields]
biodb.TRACE[2024-05-04 16:03:23.529][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:03:23.530][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:03:23.530][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:23.531][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.532][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:23.533][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:23.534][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.535][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:23.536][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:23.537][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:23.537][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:23.538][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.539][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:23.540][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:23.541][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:03:23.542][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:23.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:23.544][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:23.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:23.547][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:23.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:23.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:23.551][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-05-04 16:03:23.551][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:03:23.552][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:03:23.553][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:03:23.554][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:03:23.555][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:03:23.559][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:03:23.560][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:03:23.561][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:03:23.562][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:03:23.564][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.004489236435".
biodb.DEBUG[2024-05-04 16:03:23.566][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:03:23.567][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:03:23.568][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.004489236435".
biodb.TRACE[2024-05-04 16:03:27.573][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.004489236435).
biodb.DEBUG[2024-05-04 16:03:38.603][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:03:38.605][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/8b6f4df3787f4a46fc24f669a9568b94.content"
biodb.TRACE[2024-05-04 16:03:38.654][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/8b6f4df3787f4a46fc24f669a9568b94.request"
biodb.DEBUG[2024-05-04 16:03:39.505][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:03:39.507][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:03:39.508][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:03:39.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:03:39.513][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:03:39.514][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:03:39.515][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:03:39.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:03:39.516][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.520][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.523][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:39.524][private$selectFields]
biodb.TRACE[2024-05-04 16:03:39.525][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:03:39.525][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:03:39.526][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:39.527][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.528][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.529][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.530][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.531][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.533][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.533][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:39.534][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:39.535][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.536][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.538][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.538][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:03:39.539][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.543][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.546][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.550][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-05-04 16:03:39.551][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:03:39.551][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:03:39.552][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:03:39.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:03:39.558][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:03:39.559][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:03:39.559][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:03:39.560][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.563][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.567][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:39.568][private$selectFields]
biodb.TRACE[2024-05-04 16:03:39.569][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:03:39.569][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:03:39.570][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:39.571][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.572][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.574][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.575][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.576][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.577][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.578][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:39.579][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:39.580][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.581][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.582][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.583][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:03:39.584][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.587][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.591][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.595][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-05-04 16:03:39.596][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:03:39.596][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:03:39.597][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:03:39.602][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:03:39.603][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:03:39.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:03:39.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:03:39.606][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.609][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.612][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:39.612][private$selectFields]
biodb.TRACE[2024-05-04 16:03:39.613][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:03:39.614][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:03:39.615][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:39.616][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.617][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.618][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.619][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.620][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.621][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.622][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:39.623][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:39.623][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.624][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.626][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.627][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:03:39.628][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.631][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.634][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:39.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.638][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-05-04 16:03:39.639][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:03:39.639][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-05-04 16:03:39.647][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-04 16:03:39.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-04 16:03:39.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.651][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-04 16:03:39.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-04 16:03:39.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.654][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-04 16:03:39.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-04 16:03:39.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-04 16:03:39.661][biodb::testThat]
biodb.INFO [2024-05-04 16:03:39.662][biodb::testThat] Running test function  test_annotateMzValues_input_dataframe_untouched  (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-05-04 16:03:39.662][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:03:39.663][biodb::testThat]
biodb.TRACE[2024-05-04 16:03:39.666][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-04 16:03:39.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-04 16:03:39.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.669][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-04 16:03:39.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-04 16:03:39.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.674][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-04 16:03:39.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-04 16:03:39.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.677][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:03:39.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:03:39.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:03:39.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:03:39.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.684][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:03:39.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:03:39.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.687][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:39.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:39.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:39.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:39.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.694][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:39.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:39.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.697][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:39.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:39.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.700][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:39.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:39.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:39.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:39.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.707][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:39.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:39.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:39.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:39.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:39.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:39.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.717][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:39.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:39.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:39.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:39.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:39.723][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:39.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:39.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:39.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:03:39.730][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:03:39.731][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:03:39.731][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:03:39.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:03:39.737][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:03:39.738][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:03:39.738][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:03:39.741][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2024-05-04 16:03:39.744][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:03:39.745][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2024-05-04 16:03:39.746][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:03:39.796][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2024-05-04 16:03:40.521][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:03:40.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:03:40.523][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:03:40.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:03:40.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:03:40.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:03:40.530][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:03:40.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:03:40.532][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:40.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:40.535][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:40.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:40.538][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:40.539][private$selectFields]
biodb.TRACE[2024-05-04 16:03:40.539][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:03:40.540][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:03:40.541][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:40.541][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.542][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:40.544][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:40.545][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.545][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:40.547][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:40.548][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:40.548][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:40.549][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.550][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:40.551][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:40.552][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:03:40.553][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:40.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:40.556][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:40.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:40.559][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:40.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:40.562][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-05-04 16:03:40.563][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:03:40.564][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:03:40.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:03:40.569][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:03:40.570][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:03:40.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:03:40.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:03:40.572][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:40.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:40.575][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:40.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:40.578][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:40.578][private$selectFields]
biodb.TRACE[2024-05-04 16:03:40.579][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:03:40.580][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:03:40.581][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:40.581][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.582][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:40.642][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:40.643][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.644][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:40.646][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:40.647][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:40.648][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:40.649][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.649][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:40.651][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:40.652][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:03:40.653][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:40.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:40.656][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:40.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:40.660][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:40.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:40.663][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-05-04 16:03:40.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:03:40.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:03:40.665][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:03:40.670][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:03:40.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:03:40.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:03:40.672][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:03:40.673][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:40.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:40.676][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:40.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:40.680][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:40.680][private$selectFields]
biodb.TRACE[2024-05-04 16:03:40.681][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:03:40.682][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:03:40.683][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:40.683][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.684][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.685][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:40.686][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:40.686][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.687][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:40.689][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:40.689][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:40.690][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:40.691][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.692][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:40.693][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:40.694][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:03:40.695][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:40.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:40.698][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:40.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:40.701][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:40.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:40.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:40.704][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-05-04 16:03:40.705][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:03:40.705][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:03:40.707][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:03:40.708][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:03:40.708][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:03:40.713][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:03:40.714][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:03:40.715][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:03:40.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:03:40.718][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2024-05-04 16:03:40.721][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:03:40.722][cch$loadFileContent] Trying to load 1 files from cache: [1]: "367c47c562148006b92b77e8d975d711".
biodb.TRACE[2024-05-04 16:03:40.723][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:03:40.750][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content".
biodb.DEBUG[2024-05-04 16:03:41.561][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:03:41.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:03:41.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:03:41.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:03:41.568][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:03:41.569][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:03:41.570][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:03:41.571][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:03:41.572][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:41.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:41.575][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:41.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:41.579][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:41.580][private$selectFields]
biodb.TRACE[2024-05-04 16:03:41.580][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:03:41.581][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:03:41.582][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:41.583][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.584][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:41.585][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:41.586][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.587][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:41.588][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:41.589][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:41.590][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:41.591][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.592][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:41.593][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:41.594][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:03:41.595][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:41.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:41.598][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:41.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:41.602][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:41.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:41.606][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-05-04 16:03:41.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:03:41.607][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:03:41.608][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:03:41.613][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:03:41.614][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:03:41.615][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:03:41.616][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:03:41.617][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:41.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:41.621][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:41.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:41.624][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:41.625][private$selectFields]
biodb.TRACE[2024-05-04 16:03:41.644][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:03:41.645][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:03:41.646][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:41.647][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.648][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:41.650][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:41.651][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.651][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:41.653][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:41.654][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:41.655][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:41.656][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.657][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:41.658][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:41.659][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:03:41.660][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:41.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:41.663][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:41.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:41.667][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:41.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:41.670][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-05-04 16:03:41.671][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:03:41.672][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:03:41.672][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:03:41.677][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:03:41.678][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:03:41.679][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:03:41.680][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:03:41.681][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:41.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:41.684][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:41.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:41.688][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:41.688][private$selectFields]
biodb.TRACE[2024-05-04 16:03:41.689][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:03:41.690][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:03:41.690][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:41.691][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.692][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:41.694][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:41.695][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.696][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:41.697][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:41.698][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:41.699][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:41.700][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.701][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:41.702][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:41.703][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:03:41.704][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:41.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:41.707][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:41.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:41.710][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:41.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:41.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:41.714][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-05-04 16:03:41.715][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:03:41.715][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:03:41.717][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:03:41.718][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:03:41.718][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:03:41.723][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:03:41.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:03:41.725][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:03:41.725][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:03:41.728][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2024-05-04 16:03:41.731][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:03:41.732][cch$loadFileContent] Trying to load 1 files from cache: [1]: "276078a0b416eb2563e0b778607838d4".
biodb.TRACE[2024-05-04 16:03:41.733][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:03:41.763][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content".
biodb.DEBUG[2024-05-04 16:03:42.597][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:03:42.599][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:03:42.600][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:03:42.601][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:03:42.605][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:03:42.606][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:03:42.607][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:03:42.608][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:03:42.609][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.612][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.616][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:42.617][private$selectFields]
biodb.TRACE[2024-05-04 16:03:42.617][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:03:42.618][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:03:42.619][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:42.620][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.621][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.622][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.623][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.624][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.625][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.626][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:42.627][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:42.628][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.629][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.630][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.631][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:03:42.632][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.636][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.639][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.642][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-05-04 16:03:42.643][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:03:42.644][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:03:42.645][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:03:42.650][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:03:42.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:03:42.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:03:42.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:03:42.653][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.675][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.678][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:42.678][private$selectFields]
biodb.TRACE[2024-05-04 16:03:42.679][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:03:42.680][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:03:42.681][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:42.682][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.683][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.684][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.685][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.686][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.687][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.688][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:42.689][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:42.690][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.691][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.693][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.693][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:03:42.695][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.698][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.701][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.705][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-05-04 16:03:42.706][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:03:42.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:03:42.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:03:42.712][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:03:42.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:03:42.714][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:03:42.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:03:42.715][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.719][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.722][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:42.723][private$selectFields]
biodb.TRACE[2024-05-04 16:03:42.724][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:03:42.724][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:03:42.725][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:42.726][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.727][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.728][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.729][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.730][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.732][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.733][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:42.734][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:42.735][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.735][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.737][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.738][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:03:42.739][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.742][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.745][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:42.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.749][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-05-04 16:03:42.750][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:03:42.750][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-05-04 16:03:42.770][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-04 16:03:42.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-04 16:03:42.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.773][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-04 16:03:42.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-04 16:03:42.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.777][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-04 16:03:42.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-04 16:03:42.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.783][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:03:42.784][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:03:42.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.786][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.787][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:42.787][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:42.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.789][ef$get] fields variable is a list.
biodb.INFO [2024-05-04 16:03:42.791][biodb::testThat]
biodb.INFO [2024-05-04 16:03:42.791][biodb::testThat] Running test function  test.annotateMzValues_real_values  (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2024-05-04 16:03:42.792][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:03:42.793][biodb::testThat]
biodb.TRACE[2024-05-04 16:03:42.795][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-04 16:03:42.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-04 16:03:42.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.799][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-04 16:03:42.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-04 16:03:42.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.802][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-04 16:03:42.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-04 16:03:42.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:03:42.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:03:42.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.808][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:03:42.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:03:42.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:03:42.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:03:42.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:42.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:42.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:42.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:42.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:42.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:42.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:42.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:42.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.829][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:42.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:42.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.833][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:42.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:42.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.836][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:42.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:42.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.840][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:42.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:42.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:42.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:42.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.848][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:42.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:42.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.851][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:42.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:42.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:42.855][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:42.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:03:42.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:42.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:03:42.860][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:03:42.861][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:03:42.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:03:42.867][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:03:42.868][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:03:42.869][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:03:42.870][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:03:42.873][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.391025&ExactMassOffSet=0.11".
biodb.DEBUG[2024-05-04 16:03:42.875][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:03:42.876][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:03:42.878][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.391025&ExactMassOffSet=0.11".
biodb.TRACE[2024-05-04 16:03:47.098][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.391025&ExactMassOffSet=0.11).
biodb.DEBUG[2024-05-04 16:03:58.040][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:03:58.042][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/856708e2bbeea806179c75604ab7003a.content"
biodb.TRACE[2024-05-04 16:03:58.092][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/856708e2bbeea806179c75604ab7003a.request"
biodb.DEBUG[2024-05-04 16:03:58.956][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:03:58.958][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:03:58.958][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:03:58.959][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:03:58.964][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:03:58.965][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:03:58.966][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:03:58.966][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:03:58.967][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:58.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:58.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:58.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:58.971][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:58.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:58.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:58.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:58.974][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:58.975][private$selectFields]
biodb.TRACE[2024-05-04 16:03:58.976][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:03:58.976][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:03:58.977][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:58.978][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:58.979][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:58.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:58.980][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:58.981][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:58.982][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:58.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:58.984][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:58.985][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:58.985][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:58.986][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:58.987][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:58.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:58.989][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:58.989][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:03:58.990][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:58.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:58.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:58.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:58.993][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:58.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:58.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:58.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:58.997][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:58.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:58.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:58.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:59.000][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-05-04 16:03:59.001][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:03:59.002][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:03:59.002][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:03:59.008][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:03:59.009][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:03:59.010][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:03:59.010][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:03:59.011][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:59.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:59.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:59.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:59.015][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:59.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:59.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:59.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:59.018][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:59.019][private$selectFields]
biodb.TRACE[2024-05-04 16:03:59.019][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:03:59.020][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:03:59.021][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:59.022][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:59.023][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:59.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:59.024][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:59.025][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:59.026][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:59.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:59.028][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:59.028][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:59.029][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:59.030][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:59.031][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:59.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:59.032][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:59.033][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:03:59.034][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:59.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:59.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:59.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:59.037][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:59.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:59.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:59.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:59.041][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:59.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:59.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:59.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:59.044][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-05-04 16:03:59.045][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:03:59.046][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:03:59.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:03:59.051][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:03:59.052][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:03:59.053][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:03:59.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:03:59.055][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:59.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:59.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:59.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:59.058][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:59.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:59.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:59.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:59.062][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:59.062][private$selectFields]
biodb.TRACE[2024-05-04 16:03:59.063][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:03:59.064][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:03:59.065][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:59.066][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:59.067][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:59.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:59.068][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:59.069][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:59.070][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:59.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:59.071][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:59.072][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:59.073][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:03:59.074][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:59.074][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:59.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:59.076][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:59.077][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:03:59.078][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:59.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:59.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:59.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:59.081][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:59.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:59.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:59.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:59.085][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:59.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:03:59.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:03:59.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:03:59.088][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-05-04 16:03:59.089][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:03:59.090][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:03:59.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:03:59.092][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:03:59.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:03:59.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:03:59.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:03:59.100][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:03:59.100][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:03:59.103][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.073274&ExactMassOffSet=0.11".
biodb.DEBUG[2024-05-04 16:03:59.106][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:03:59.107][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:03:59.109][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.073274&ExactMassOffSet=0.11".
biodb.TRACE[2024-05-04 16:04:03.650][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.073274&ExactMassOffSet=0.11).
biodb.DEBUG[2024-05-04 16:04:14.617][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:04:14.623][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/213dc74fea82b4e00a3de9c6296d60ac.content"
biodb.TRACE[2024-05-04 16:04:14.694][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/213dc74fea82b4e00a3de9c6296d60ac.request"
biodb.DEBUG[2024-05-04 16:04:15.578][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:04:15.580][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:04:15.581][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:04:15.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:04:15.588][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:04:15.589][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:04:15.589][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:04:15.590][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:04:15.592][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:15.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:15.595][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:15.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:15.598][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:15.599][private$selectFields]
biodb.TRACE[2024-05-04 16:04:15.600][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:04:15.601][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:04:15.602][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:15.602][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.603][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:15.605][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:15.606][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.607][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:15.608][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:15.609][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:15.610][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:15.611][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.612][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:15.613][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:15.614][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:04:15.615][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:15.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:15.618][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:15.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:15.622][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:15.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:15.625][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-05-04 16:04:15.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:04:15.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:04:15.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:04:15.633][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:04:15.634][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:04:15.634][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:04:15.635][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:04:15.636][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:15.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:15.640][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:15.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:15.643][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:15.644][private$selectFields]
biodb.TRACE[2024-05-04 16:04:15.645][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:04:15.646][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:04:15.647][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:15.648][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.649][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.650][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:15.651][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:15.651][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.652][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:15.654][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:15.655][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:15.656][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:15.657][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.658][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:15.660][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:15.661][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:04:15.661][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:15.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:15.665][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:15.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:15.668][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:15.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:15.672][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-05-04 16:04:15.673][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:04:15.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:04:15.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:04:15.680][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:04:15.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:04:15.682][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:04:15.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:04:15.683][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:15.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:15.687][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:15.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:15.691][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:15.692][private$selectFields]
biodb.TRACE[2024-05-04 16:04:15.693][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:04:15.693][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:04:15.694][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:15.695][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.696][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:15.698][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:15.699][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.700][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:15.702][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:15.702][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:15.703][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:15.704][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.705][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:15.707][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:15.708][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:04:15.709][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:15.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:15.712][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:15.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:15.727][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:15.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:15.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:15.732][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-05-04 16:04:15.732][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:04:15.733][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:04:15.735][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:04:15.736][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:04:15.736][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:04:15.743][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:04:15.746][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:04:15.747][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:04:15.748][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:04:15.750][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.182429&ExactMassOffSet=0.11".
biodb.DEBUG[2024-05-04 16:04:15.754][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:04:15.754][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:04:15.756][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.182429&ExactMassOffSet=0.11".
biodb.TRACE[2024-05-04 16:04:19.959][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.182429&ExactMassOffSet=0.11).
biodb.DEBUG[2024-05-04 16:04:31.181][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:04:31.183][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/599a9d63e9d10326d614f066b3a2769e.content"
biodb.TRACE[2024-05-04 16:04:31.229][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/599a9d63e9d10326d614f066b3a2769e.request"
biodb.DEBUG[2024-05-04 16:04:32.063][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:04:32.064][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:04:32.065][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:04:32.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:04:32.071][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:04:32.071][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:04:32.072][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:04:32.073][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:04:32.074][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:32.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:32.077][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:32.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:32.080][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:32.081][private$selectFields]
biodb.TRACE[2024-05-04 16:04:32.082][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:04:32.082][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:04:32.083][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:32.084][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.084][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:32.086][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:32.086][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.087][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:32.089][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:32.089][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:32.090][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:32.091][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.091][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:32.093][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:32.094][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:04:32.095][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:32.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:32.098][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:32.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:32.101][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:32.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:32.105][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-05-04 16:04:32.106][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:04:32.106][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:04:32.107][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:04:32.112][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:04:32.113][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:04:32.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:04:32.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:04:32.115][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:32.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:32.118][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:32.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:32.121][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:32.122][private$selectFields]
biodb.TRACE[2024-05-04 16:04:32.123][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:04:32.123][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:04:32.124][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:32.125][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.125][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:32.127][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:32.128][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.128][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:32.130][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:32.131][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:32.132][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:32.133][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.134][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:32.135][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:32.136][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:04:32.137][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:32.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:32.140][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:32.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:32.143][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:32.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:32.146][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-05-04 16:04:32.147][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:04:32.147][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:04:32.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:04:32.153][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:04:32.154][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:04:32.154][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:04:32.155][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:04:32.156][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:32.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:32.159][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:32.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:32.162][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:32.163][private$selectFields]
biodb.TRACE[2024-05-04 16:04:32.164][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:04:32.164][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:04:32.165][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:32.166][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.167][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:32.168][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:32.169][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.170][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:32.172][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:32.172][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:32.173][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:32.174][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.175][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:32.176][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:32.177][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:04:32.178][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:32.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:32.181][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:32.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:32.184][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:32.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:32.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:32.187][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-05-04 16:04:32.188][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:04:32.188][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:04:32.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:04:32.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:04:32.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:04:32.213][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:04:32.214][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:04:32.215][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:04:32.215][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:04:32.218][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2024-05-04 16:04:32.220][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:04:32.221][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2024-05-04 16:04:32.222][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:04:32.265][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2024-05-04 16:04:33.097][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:04:33.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:04:33.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:04:33.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:04:33.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:04:33.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:04:33.107][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:04:33.108][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:04:33.109][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:33.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:33.112][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:33.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:33.116][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:33.116][private$selectFields]
biodb.TRACE[2024-05-04 16:04:33.117][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:04:33.118][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:04:33.119][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:33.120][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.120][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:33.122][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:33.123][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.124][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:33.125][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:33.126][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:33.127][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:33.128][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.129][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:33.130][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:33.131][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:04:33.132][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:33.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:33.136][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:33.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:33.139][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:33.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:33.143][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-05-04 16:04:33.144][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:04:33.144][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:04:33.145][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:04:33.150][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:04:33.151][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:04:33.152][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:04:33.153][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:04:33.154][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:33.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:33.157][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:33.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:33.160][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:33.161][private$selectFields]
biodb.TRACE[2024-05-04 16:04:33.162][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:04:33.163][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:04:33.164][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:33.164][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.165][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:33.167][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:33.168][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.169][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:33.170][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:33.171][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:33.172][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:33.173][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.174][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:33.176][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:33.177][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:04:33.177][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:33.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:33.181][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:33.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:33.184][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:33.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:33.188][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-05-04 16:04:33.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:04:33.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:04:33.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:04:33.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:04:33.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:04:33.197][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:04:33.198][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:04:33.199][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:33.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:33.202][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:33.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:33.206][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:33.207][private$selectFields]
biodb.TRACE[2024-05-04 16:04:33.207][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:04:33.208][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:04:33.209][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:33.210][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.211][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:33.213][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:33.214][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.214][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:33.229][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:33.247][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:33.249][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:33.250][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.251][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:33.252][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:33.253][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:04:33.254][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:33.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:33.258][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:33.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:33.261][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:33.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:33.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:33.265][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-05-04 16:04:33.266][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:04:33.267][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:04:33.268][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:04:33.269][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:04:33.270][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:04:33.275][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:04:33.276][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:04:33.277][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:04:33.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:04:33.280][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2024-05-04 16:04:33.283][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:04:33.285][cch$loadFileContent] Trying to load 1 files from cache: [1]: "367c47c562148006b92b77e8d975d711".
biodb.TRACE[2024-05-04 16:04:33.286][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:04:33.317][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content".
biodb.DEBUG[2024-05-04 16:04:34.194][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:04:34.196][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:04:34.197][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:04:34.198][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:04:34.203][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:04:34.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:04:34.204][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:04:34.205][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:04:34.206][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:34.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:34.209][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:34.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:34.213][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:34.213][private$selectFields]
biodb.TRACE[2024-05-04 16:04:34.214][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:04:34.215][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:04:34.216][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:34.217][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.218][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:34.219][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:34.220][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.221][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:34.222][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:34.223][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:34.224][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:34.225][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.226][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:34.227][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:34.228][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:04:34.229][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:34.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:34.232][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:34.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:34.235][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:34.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:34.239][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-05-04 16:04:34.240][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:04:34.241][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:04:34.242][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:04:34.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:04:34.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:04:34.248][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:04:34.249][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:04:34.250][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:34.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:34.254][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:34.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:34.257][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:34.258][private$selectFields]
biodb.TRACE[2024-05-04 16:04:34.277][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:04:34.278][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:04:34.280][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:34.281][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.282][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:34.284][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:34.285][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.286][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:34.287][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:34.288][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:34.289][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:34.290][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.291][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.292][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:34.293][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:34.294][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:04:34.295][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:34.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:34.298][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:34.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:34.302][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:34.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:34.306][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-05-04 16:04:34.307][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:04:34.308][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:04:34.309][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:04:34.316][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:04:34.317][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:04:34.318][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:04:34.319][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:04:34.320][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:34.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:34.338][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:34.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:34.342][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:34.352][private$selectFields]
biodb.TRACE[2024-05-04 16:04:34.353][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:04:34.354][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:04:34.356][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:34.357][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.359][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:34.361][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:34.361][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.362][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:34.364][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:34.365][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:34.366][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:34.366][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.367][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:34.369][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:34.370][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:04:34.372][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:34.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:34.377][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:34.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:34.381][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:34.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:34.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:34.386][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-05-04 16:04:34.387][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:04:34.388][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:04:34.390][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:04:34.391][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:04:34.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:04:34.397][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:04:34.397][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:04:34.398][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:04:34.399][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:04:34.402][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2024-05-04 16:04:34.405][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:04:34.406][cch$loadFileContent] Trying to load 1 files from cache: [1]: "276078a0b416eb2563e0b778607838d4".
biodb.TRACE[2024-05-04 16:04:34.407][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:04:34.439][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content".
biodb.DEBUG[2024-05-04 16:04:35.360][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:04:35.361][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:04:35.362][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:04:35.363][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:04:35.368][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:04:35.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:04:35.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:04:35.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:04:35.391][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:35.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:35.395][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:35.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:35.398][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:35.399][private$selectFields]
biodb.TRACE[2024-05-04 16:04:35.400][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:04:35.401][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:04:35.402][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:35.402][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.403][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:35.405][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:35.406][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.407][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:35.408][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:35.409][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:35.410][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:35.411][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.412][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:35.413][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:35.414][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:04:35.415][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:35.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:35.418][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:35.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:35.422][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:35.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:35.425][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-05-04 16:04:35.426][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:04:35.427][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:04:35.427][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:04:35.433][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:04:35.434][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:04:35.435][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:04:35.436][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:04:35.437][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:35.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:35.440][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:35.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:35.443][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:35.444][private$selectFields]
biodb.TRACE[2024-05-04 16:04:35.445][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:04:35.446][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:04:35.447][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:35.448][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.449][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:35.450][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:35.451][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.452][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:35.454][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:35.455][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:35.455][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:35.457][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.458][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:35.459][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:35.460][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:04:35.461][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:35.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:35.465][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:35.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:35.468][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:35.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:35.472][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-05-04 16:04:35.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:04:35.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:04:35.474][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:04:35.480][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:04:35.481][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:04:35.481][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:04:35.482][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:04:35.483][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:35.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:35.487][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:35.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:35.490][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:35.492][private$selectFields]
biodb.TRACE[2024-05-04 16:04:35.492][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:04:35.493][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:04:35.494][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:35.495][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.496][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:35.498][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:35.499][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.500][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:35.501][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:35.503][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:35.503][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:35.504][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.505][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:35.507][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:35.508][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:04:35.509][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:35.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:35.513][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:35.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:35.516][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:35.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:35.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:35.520][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-05-04 16:04:35.521][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:04:35.522][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:04:35.544][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:04:35.545][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:04:35.546][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:04:35.550][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:04:35.551][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:04:35.552][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:04:35.553][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:04:35.556][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.591025&ExactMassOffSet=0.11".
biodb.DEBUG[2024-05-04 16:04:35.559][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:04:35.560][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:04:35.561][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.591025&ExactMassOffSet=0.11".
biodb.TRACE[2024-05-04 16:04:39.446][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.591025&ExactMassOffSet=0.11).
biodb.DEBUG[2024-05-04 16:04:50.726][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:04:50.728][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/ec7b47285bd6f593d724b6f7745f0646.content"
biodb.TRACE[2024-05-04 16:04:50.768][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/ec7b47285bd6f593d724b6f7745f0646.request"
biodb.DEBUG[2024-05-04 16:04:51.607][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:04:51.609][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:04:51.610][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:04:51.611][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:04:51.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:04:51.616][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:04:51.617][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:04:51.618][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:04:51.619][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:51.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:51.622][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:51.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:51.626][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:51.626][private$selectFields]
biodb.TRACE[2024-05-04 16:04:51.627][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:04:51.628][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:04:51.629][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:51.630][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.630][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:51.632][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:51.633][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.634][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:51.635][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:51.636][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:51.637][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:51.638][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.639][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:51.640][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:51.641][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:04:51.642][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:51.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:51.645][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:51.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:51.649][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:51.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:51.652][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-05-04 16:04:51.653][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:04:51.654][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:04:51.655][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:04:51.659][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:04:51.660][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:04:51.661][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:04:51.662][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:04:51.663][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:51.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:51.666][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:51.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:51.669][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:51.670][private$selectFields]
biodb.TRACE[2024-05-04 16:04:51.671][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:04:51.671][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:04:51.672][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:51.673][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.674][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:51.675][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:51.676][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.677][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:51.679][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:51.680][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:51.680][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:51.681][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.682][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:51.683][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:51.684][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:04:51.685][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:51.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:51.688][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:51.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:51.692][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:51.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:51.695][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-05-04 16:04:51.696][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:04:51.697][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:04:51.698][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:04:51.702][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:04:51.703][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:04:51.704][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:04:51.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:04:51.706][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:51.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:51.709][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:51.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:51.712][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:51.713][private$selectFields]
biodb.TRACE[2024-05-04 16:04:51.714][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:04:51.715][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:04:51.716][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:51.716][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.717][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.718][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:51.719][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:51.720][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.721][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:51.722][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:51.723][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:51.724][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:04:51.725][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.726][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:51.727][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:51.728][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:04:51.729][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:51.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:51.733][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:51.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:51.736][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:04:51.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:04:51.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:04:51.740][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-05-04 16:04:51.741][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:04:51.742][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:04:51.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:04:51.744][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:04:51.745][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:04:51.750][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:04:51.751][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:04:51.752][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:04:51.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:04:51.755][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.273274&ExactMassOffSet=0.11".
biodb.DEBUG[2024-05-04 16:04:51.758][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:04:51.758][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:04:51.760][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.273274&ExactMassOffSet=0.11".
biodb.TRACE[2024-05-04 16:04:55.831][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.273274&ExactMassOffSet=0.11).
biodb.DEBUG[2024-05-04 16:05:07.283][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:05:07.285][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/236b5f2d20f6da60d3d5e29141c3c6fd.content"
biodb.TRACE[2024-05-04 16:05:07.331][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/236b5f2d20f6da60d3d5e29141c3c6fd.request"
biodb.DEBUG[2024-05-04 16:05:08.361][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:05:08.363][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:08.364][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:08.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:08.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:08.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:08.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:08.372][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:08.373][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:08.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:08.377][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:08.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:08.380][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:08.381][private$selectFields]
biodb.TRACE[2024-05-04 16:05:08.382][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:08.382][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:08.383][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:08.384][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.385][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:08.387][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:08.387][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.388][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:08.390][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:08.391][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:08.392][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:08.393][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.393][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:08.395][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:08.396][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:05:08.397][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:08.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:08.400][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:08.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:08.404][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:08.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:08.408][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-05-04 16:05:08.408][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:08.409][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:08.410][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:08.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:08.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:08.416][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:08.417][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:08.418][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:08.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:08.422][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:08.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:08.425][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:08.426][private$selectFields]
biodb.TRACE[2024-05-04 16:05:08.427][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:08.427][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:08.428][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:08.429][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.430][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:08.432][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:08.433][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.434][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:08.436][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:08.437][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:08.437][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:08.438][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.439][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:08.441][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:08.442][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:05:08.443][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:08.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:08.446][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:08.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:08.450][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:08.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:08.454][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-05-04 16:05:08.455][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:08.456][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:08.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:08.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:08.470][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:08.471][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:08.472][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:08.473][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:08.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:08.476][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:08.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:08.519][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:08.520][private$selectFields]
biodb.TRACE[2024-05-04 16:05:08.521][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:08.522][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:08.522][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:08.533][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.534][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:08.536][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:08.536][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.537][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:08.539][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:08.540][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:08.541][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:08.542][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.542][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:08.544][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:08.545][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:05:08.547][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:08.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:08.550][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:08.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:08.554][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:08.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:08.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:08.558][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-05-04 16:05:08.559][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:05:08.559][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:05:08.561][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:08.562][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:08.563][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:08.567][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:08.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:08.569][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:08.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:05:08.573][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.382429&ExactMassOffSet=0.11".
biodb.DEBUG[2024-05-04 16:05:08.575][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-05-04 16:05:08.576][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-05-04 16:05:08.578][private$doSendRequestOnce] Sent URL is "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.382429&ExactMassOffSet=0.11".
biodb.TRACE[2024-05-04 16:05:12.572][getRCurlRequestResult] Using RCurl package for sending request (https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.382429&ExactMassOffSet=0.11).
biodb.DEBUG[2024-05-04 16:05:23.322][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-05-04 16:05:23.324][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/c0ec3345a6e512e30aa3c52ef1c02f40.content"
biodb.TRACE[2024-05-04 16:05:23.367][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/c0ec3345a6e512e30aa3c52ef1c02f40.request"
biodb.DEBUG[2024-05-04 16:05:24.229][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:05:24.231][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:24.232][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:24.232][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:24.237][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:24.238][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:24.239][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:24.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:24.241][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:24.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:24.244][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:24.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:24.247][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:24.248][private$selectFields]
biodb.TRACE[2024-05-04 16:05:24.249][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:24.250][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:24.250][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:24.251][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.252][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:24.254][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:24.255][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.256][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:24.257][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:24.258][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:24.259][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:24.259][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.260][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.261][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:24.262][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:24.263][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:05:24.264][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:24.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:24.267][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:24.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:24.270][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:24.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:24.273][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-05-04 16:05:24.274][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:24.275][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:24.276][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:24.281][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:24.281][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:24.282][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:24.283][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:24.284][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:24.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:24.287][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:24.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:24.290][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:24.291][private$selectFields]
biodb.TRACE[2024-05-04 16:05:24.292][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:24.292][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:24.293][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:24.294][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.295][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:24.296][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:24.297][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.298][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:24.300][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:24.300][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:24.301][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:24.302][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.303][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:24.304][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:24.305][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:05:24.306][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:24.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:24.309][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:24.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:24.312][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:24.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:24.316][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-05-04 16:05:24.317][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:24.318][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:24.319][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:24.323][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:24.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:24.325][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:24.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:24.327][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:24.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:24.330][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:24.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:24.333][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:24.334][private$selectFields]
biodb.TRACE[2024-05-04 16:05:24.335][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:24.336][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:24.336][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:24.337][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.338][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:24.340][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:24.341][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.341][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:24.343][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:24.344][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:24.345][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:24.346][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.347][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:24.348][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:24.349][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:05:24.350][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:24.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:24.353][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:24.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:24.357][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:24.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:24.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:24.360][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-05-04 16:05:24.361][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:05:24.362][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:05:24.382][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:24.383][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:24.384][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:24.389][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:24.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:24.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:24.391][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:05:24.394][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.391025&ExactMassOffSet=0.11".
biodb.DEBUG[2024-05-04 16:05:24.396][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:05:24.398][cch$loadFileContent] Trying to load 1 files from cache: [1]: "856708e2bbeea806179c75604ab7003a".
biodb.TRACE[2024-05-04 16:05:24.399][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:05:24.450][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/856708e2bbeea806179c75604ab7003a.content".
biodb.DEBUG[2024-05-04 16:05:25.291][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:05:25.292][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:25.293][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:25.294][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:25.299][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:25.300][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:25.301][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:25.301][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:25.303][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:25.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:25.306][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:25.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:25.310][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:25.310][private$selectFields]
biodb.TRACE[2024-05-04 16:05:25.311][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:25.312][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:25.313][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:25.313][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.314][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:25.316][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:25.317][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.318][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:25.319][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:25.320][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:25.321][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:25.321][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.322][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:25.324][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:25.325][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:05:25.326][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:25.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:25.343][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:25.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:25.347][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:25.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:25.350][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-05-04 16:05:25.351][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:25.352][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:25.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:25.357][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:25.359][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:25.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:25.363][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:25.364][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:25.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:25.367][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:25.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:25.370][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:25.371][private$selectFields]
biodb.TRACE[2024-05-04 16:05:25.372][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:25.373][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:25.374][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:25.374][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.375][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:25.377][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:25.378][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.379][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:25.380][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:25.381][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:25.382][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:25.383][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.384][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:25.386][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:25.387][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:05:25.388][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:25.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:25.391][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:25.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:25.394][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:25.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:25.398][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-05-04 16:05:25.399][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:25.399][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:25.400][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:25.405][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:25.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:25.407][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:25.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:25.408][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:25.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:25.412][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:25.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:25.415][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:25.416][private$selectFields]
biodb.TRACE[2024-05-04 16:05:25.416][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:25.417][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:25.418][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:25.419][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.420][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:25.421][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:25.422][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.423][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:25.425][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:25.426][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:25.427][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:25.427][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.428][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:25.430][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:25.431][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:05:25.432][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:25.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:25.435][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:25.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:25.458][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:25.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:25.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:25.462][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-05-04 16:05:25.463][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:05:25.463][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:05:25.465][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:25.466][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:25.467][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:25.472][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:25.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:25.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:25.474][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:05:25.477][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.073274&ExactMassOffSet=0.11".
biodb.DEBUG[2024-05-04 16:05:25.480][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:05:25.482][cch$loadFileContent] Trying to load 1 files from cache: [1]: "213dc74fea82b4e00a3de9c6296d60ac".
biodb.TRACE[2024-05-04 16:05:25.483][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:05:25.513][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/213dc74fea82b4e00a3de9c6296d60ac.content".
biodb.DEBUG[2024-05-04 16:05:26.376][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:05:26.377][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:26.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:26.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:26.384][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:26.385][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:26.386][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:26.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:26.388][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:26.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:26.391][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:26.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:26.394][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:26.395][private$selectFields]
biodb.TRACE[2024-05-04 16:05:26.396][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:26.397][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:26.397][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:26.398][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.399][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:26.413][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:26.414][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.415][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:26.417][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:26.418][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:26.419][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:26.420][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.421][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:26.422][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:26.423][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:05:26.424][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:26.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:26.429][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:26.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:26.434][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:26.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:26.438][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-05-04 16:05:26.438][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:26.439][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:26.440][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:26.445][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:26.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:26.447][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:26.447][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:26.449][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:26.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:26.452][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:26.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:26.455][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:26.456][private$selectFields]
biodb.TRACE[2024-05-04 16:05:26.457][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:26.458][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:26.459][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:26.460][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.460][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:26.462][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:26.463][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.463][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:26.465][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:26.466][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:26.467][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:26.467][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.469][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:26.470][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:26.471][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:05:26.472][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:26.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:26.475][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:26.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:26.478][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:26.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:26.484][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-05-04 16:05:26.485][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:26.512][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:26.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:26.558][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:26.576][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:26.579][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:26.605][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:26.606][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:26.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:26.609][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:26.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:26.653][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:26.654][private$selectFields]
biodb.TRACE[2024-05-04 16:05:26.655][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:26.656][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:26.657][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:26.657][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.658][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:26.660][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:26.661][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.662][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:26.664][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:26.665][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:26.666][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:26.666][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.667][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:26.669][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:26.670][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:05:26.671][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:26.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:26.675][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:26.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:26.678][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:26.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:26.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:26.682][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-05-04 16:05:26.682][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:05:26.683][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:05:26.685][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:26.686][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:26.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:26.692][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:26.692][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:26.693][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:26.694][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:05:26.697][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.182429&ExactMassOffSet=0.11".
biodb.DEBUG[2024-05-04 16:05:26.699][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:05:26.701][cch$loadFileContent] Trying to load 1 files from cache: [1]: "599a9d63e9d10326d614f066b3a2769e".
biodb.TRACE[2024-05-04 16:05:26.702][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:05:26.734][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/599a9d63e9d10326d614f066b3a2769e.content".
biodb.DEBUG[2024-05-04 16:05:27.632][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:05:27.634][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:27.635][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:27.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:27.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:27.641][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:27.642][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:27.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:27.644][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:27.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:27.647][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:27.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:27.651][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:27.651][private$selectFields]
biodb.TRACE[2024-05-04 16:05:27.652][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:27.653][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:27.654][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:27.655][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.656][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:27.657][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:27.658][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.659][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:27.660][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:27.661][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:27.662][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:27.663][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.664][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:27.665][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:27.666][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:05:27.667][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:27.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:27.670][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:27.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:27.673][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:27.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:27.677][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-05-04 16:05:27.678][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:27.678][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:27.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:27.684][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:27.685][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:27.686][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:27.687][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:27.688][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:27.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:27.691][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:27.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:27.695][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:27.695][private$selectFields]
biodb.TRACE[2024-05-04 16:05:27.696][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:27.697][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:27.698][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:27.699][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.700][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:27.701][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:27.702][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.703][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:27.705][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:27.706][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:27.706][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:27.707][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.708][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:27.710][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:27.711][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:05:27.712][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:27.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:27.715][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:27.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:27.718][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:27.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:27.722][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-05-04 16:05:27.723][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:27.724][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:27.724][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:27.729][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:27.730][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:27.731][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:27.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:27.733][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:27.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:27.736][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:27.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:27.740][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:27.741][private$selectFields]
biodb.TRACE[2024-05-04 16:05:27.741][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:27.742][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:27.743][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:27.744][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.745][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:27.746][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:27.747][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.748][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:27.750][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:27.751][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:27.751][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:27.752][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.753][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:27.755][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:27.755][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:05:27.756][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:27.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:27.760][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:27.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:27.763][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:27.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:27.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:27.766][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-05-04 16:05:27.767][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:05:27.768][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:05:27.789][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:27.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:27.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:27.796][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:27.797][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:27.798][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:27.799][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:05:27.802][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2024-05-04 16:05:27.805][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:05:27.806][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2024-05-04 16:05:27.807][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:05:27.858][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2024-05-04 16:05:28.742][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:05:28.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:28.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:28.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:28.751][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:28.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:28.753][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:28.753][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:28.754][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:28.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:28.758][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:28.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:28.761][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:28.762][private$selectFields]
biodb.TRACE[2024-05-04 16:05:28.762][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:28.763][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:28.764][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:28.765][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.765][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:28.767][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:28.768][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.769][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:28.770][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:28.771][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:28.772][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:28.772][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.774][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:28.775][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:28.776][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:05:28.777][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:28.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:28.780][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:28.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:28.783][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:28.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:28.786][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-05-04 16:05:28.787][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:28.788][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:28.789][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:28.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:28.795][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:28.795][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:28.796][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:28.797][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:28.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:28.801][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:28.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:28.804][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:28.805][private$selectFields]
biodb.TRACE[2024-05-04 16:05:28.805][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:28.806][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:28.807][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:28.808][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.808][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:28.811][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:28.812][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.812][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:28.814][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:28.815][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:28.816][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:28.817][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.818][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:28.819][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:28.820][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:05:28.821][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:28.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:28.824][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:28.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:28.828][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:28.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:28.832][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-05-04 16:05:28.833][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:28.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:28.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:28.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:28.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:28.841][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:28.842][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:28.843][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:28.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:28.846][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:28.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:28.850][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:28.851][private$selectFields]
biodb.TRACE[2024-05-04 16:05:28.852][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:28.852][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:28.853][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:28.854][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.855][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:28.857][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:28.857][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.858][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:28.860][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:28.861][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:28.862][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:28.862][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.863][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:28.865][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:28.866][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:05:28.867][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:28.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:28.889][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:28.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:28.892][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:28.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:28.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:28.896][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-05-04 16:05:28.897][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:05:28.898][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:05:28.900][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:28.901][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:28.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:28.906][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:28.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:28.908][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:28.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:05:28.912][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2024-05-04 16:05:28.915][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:05:28.916][cch$loadFileContent] Trying to load 1 files from cache: [1]: "367c47c562148006b92b77e8d975d711".
biodb.TRACE[2024-05-04 16:05:28.917][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:05:28.946][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content".
biodb.DEBUG[2024-05-04 16:05:29.805][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:05:29.807][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:29.808][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:29.808][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:29.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:29.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:29.815][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:29.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:29.817][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:29.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:29.820][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:29.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:29.823][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:29.824][private$selectFields]
biodb.TRACE[2024-05-04 16:05:29.825][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:29.825][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:29.826][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:29.827][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.828][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:29.830][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:29.831][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.831][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:29.833][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:29.834][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:29.835][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:29.835][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.836][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.837][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:29.838][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:29.839][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:05:29.839][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:29.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:29.843][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:29.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:29.846][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:29.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:29.850][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-05-04 16:05:29.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:29.851][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:29.852][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:29.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:29.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:29.859][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:29.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:29.861][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:29.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:29.864][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:29.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:29.867][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:29.868][private$selectFields]
biodb.TRACE[2024-05-04 16:05:29.869][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:29.869][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:29.870][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:29.871][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.872][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:29.874][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:29.874][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.875][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:29.877][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:29.878][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:29.878][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:29.879][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.880][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:29.882][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:29.882][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:05:29.883][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:29.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:29.906][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:29.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:29.909][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:29.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:29.913][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-05-04 16:05:29.914][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:29.914][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:29.915][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:29.921][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:29.922][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:29.922][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:29.923][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:29.925][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:29.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:29.928][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:29.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:29.931][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:29.932][private$selectFields]
biodb.TRACE[2024-05-04 16:05:29.933][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:29.933][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:29.934][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:29.935][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.936][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:29.937][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:29.938][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.939][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:29.941][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:29.942][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:29.942][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:29.943][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.944][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:29.945][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:29.947][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:05:29.947][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:29.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:29.951][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:29.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:29.954][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:29.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:29.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:29.957][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-05-04 16:05:29.958][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:05:29.959][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:05:29.961][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:29.961][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:29.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:29.968][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:29.969][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:29.969][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:29.970][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:05:29.973][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2024-05-04 16:05:29.976][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:05:29.977][cch$loadFileContent] Trying to load 1 files from cache: [1]: "276078a0b416eb2563e0b778607838d4".
biodb.TRACE[2024-05-04 16:05:29.978][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:05:30.008][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content".
biodb.DEBUG[2024-05-04 16:05:30.871][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:05:30.873][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:30.874][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:30.875][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:30.880][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:30.881][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:30.882][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:30.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:30.883][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:30.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:30.887][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:30.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:30.890][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:30.891][private$selectFields]
biodb.TRACE[2024-05-04 16:05:30.892][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:30.893][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:30.894][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:30.895][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.895][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:30.897][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:30.898][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.899][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:30.900][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:30.901][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:30.902][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:30.903][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.904][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:30.905][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:30.924][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:05:30.925][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:30.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:30.929][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:30.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:30.933][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:30.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:30.936][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-05-04 16:05:30.937][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:30.938][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:30.938][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:30.944][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:30.944][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:30.945][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:30.946][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:30.947][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:30.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:30.950][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:30.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:30.954][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:30.955][private$selectFields]
biodb.TRACE[2024-05-04 16:05:30.955][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:30.956][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:30.957][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:30.958][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.959][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:30.960][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:30.961][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.962][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.963][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:30.963][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:30.964][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:30.965][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:30.966][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.967][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:30.968][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:30.969][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:05:30.970][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:30.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:30.973][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:30.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:30.976][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:30.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:30.980][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-05-04 16:05:30.981][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:30.982][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:30.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:30.987][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:30.988][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:30.989][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:30.990][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:30.990][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:30.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:30.994][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:30.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:30.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:30.997][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:30.998][private$selectFields]
biodb.TRACE[2024-05-04 16:05:30.999][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:30.999][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:31.000][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:31.001][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:31.002][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:31.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:31.004][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:31.004][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:31.005][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:31.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:31.007][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:31.008][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:31.008][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:31.009][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:31.010][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:31.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:31.011][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:31.012][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:05:31.013][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:31.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:31.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:31.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:31.017][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:31.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:31.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:31.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:31.020][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:31.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:31.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:31.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:31.024][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-05-04 16:05:31.024][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:05:31.025][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:05:31.046][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:31.047][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:31.048][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:31.053][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:31.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:31.054][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:31.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:05:31.058][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.591025&ExactMassOffSet=0.11".
biodb.DEBUG[2024-05-04 16:05:31.061][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:05:31.062][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ec7b47285bd6f593d724b6f7745f0646".
biodb.TRACE[2024-05-04 16:05:31.063][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:05:31.093][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/ec7b47285bd6f593d724b6f7745f0646.content".
biodb.DEBUG[2024-05-04 16:05:31.966][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:05:31.968][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:31.968][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:31.969][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:31.974][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:31.975][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:31.976][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:31.977][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:31.978][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:31.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:31.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:31.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:31.982][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:31.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:31.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:31.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:31.985][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:31.986][private$selectFields]
biodb.TRACE[2024-05-04 16:05:31.987][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:31.988][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:31.988][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:31.989][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:31.990][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:31.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:31.992][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:31.993][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:31.994][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:31.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:31.995][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:31.996][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:31.997][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:31.997][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:31.998][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:31.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:32.000][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:32.001][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:05:32.001][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:32.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:32.005][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:32.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:32.008][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:32.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:32.012][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-05-04 16:05:32.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:32.013][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:32.014][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:32.019][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:32.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:32.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:32.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:32.023][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:32.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:32.026][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:32.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:32.029][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:32.030][private$selectFields]
biodb.TRACE[2024-05-04 16:05:32.031][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:32.032][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:32.032][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:32.033][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.034][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.035][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:32.035][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:32.036][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.037][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.038][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:32.039][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:32.039][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:32.040][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:32.041][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.042][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:32.043][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:32.044][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:05:32.045][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:32.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:32.049][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:32.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:32.052][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:32.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:32.056][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-05-04 16:05:32.057][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:32.057][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:32.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:32.063][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:32.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:32.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:32.065][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:32.066][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:32.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:32.069][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:32.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:32.073][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:32.074][private$selectFields]
biodb.TRACE[2024-05-04 16:05:32.075][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:32.076][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:32.076][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:32.077][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.078][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:32.080][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:32.093][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.094][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:32.096][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:32.097][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:32.098][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:32.099][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.100][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:32.101][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:32.102][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:05:32.103][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:32.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:32.107][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:32.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:32.114][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:32.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:32.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:32.117][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-05-04 16:05:32.118][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:05:32.119][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:05:32.121][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:32.122][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:32.123][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:32.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:32.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:32.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:32.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:05:32.132][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.273274&ExactMassOffSet=0.11".
biodb.DEBUG[2024-05-04 16:05:32.136][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:05:32.137][cch$loadFileContent] Trying to load 1 files from cache: [1]: "236b5f2d20f6da60d3d5e29141c3c6fd".
biodb.TRACE[2024-05-04 16:05:32.138][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:05:32.168][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/236b5f2d20f6da60d3d5e29141c3c6fd.content".
biodb.DEBUG[2024-05-04 16:05:33.049][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:05:33.051][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:33.052][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:33.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:33.058][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:33.058][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:33.059][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:33.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:33.061][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:33.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:33.064][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:33.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:33.068][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:33.068][private$selectFields]
biodb.TRACE[2024-05-04 16:05:33.069][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:33.070][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:33.071][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:33.072][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.072][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:33.074][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:33.075][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.076][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:33.077][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:33.079][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:33.079][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:33.080][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.081][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:33.083][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:33.084][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:05:33.085][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:33.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:33.088][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:33.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:33.091][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:33.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:33.095][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-05-04 16:05:33.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:33.096][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:33.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:33.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:33.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:33.103][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:33.104][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:33.105][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:33.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:33.109][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:33.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:33.112][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:33.112][private$selectFields]
biodb.TRACE[2024-05-04 16:05:33.113][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:33.114][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:33.115][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:33.116][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.117][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:33.118][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:33.119][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.120][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:33.122][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:33.123][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:33.123][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:33.124][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.125][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:33.126][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:33.127][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:05:33.128][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:33.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:33.131][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:33.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:33.135][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:33.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:33.138][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-05-04 16:05:33.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:33.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:33.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:33.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:33.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:33.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:33.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:33.149][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:33.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:33.152][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:33.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:33.155][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:33.156][private$selectFields]
biodb.TRACE[2024-05-04 16:05:33.157][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:33.157][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:33.158][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:33.159][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.160][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:33.162][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:33.163][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.163][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:33.165][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:33.166][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:33.167][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:33.167][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.168][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:33.170][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:33.171][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:05:33.172][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:33.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:33.175][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:33.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:33.179][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:33.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:33.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:33.182][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-05-04 16:05:33.183][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:05:33.184][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:05:33.186][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:33.187][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:33.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:33.193][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:33.194][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:33.194][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:33.195][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:05:33.197][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.382429&ExactMassOffSet=0.11".
biodb.DEBUG[2024-05-04 16:05:33.200][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:05:33.201][cch$loadFileContent] Trying to load 1 files from cache: [1]: "c0ec3345a6e512e30aa3c52ef1c02f40".
biodb.TRACE[2024-05-04 16:05:33.203][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:05:33.233][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/c0ec3345a6e512e30aa3c52ef1c02f40.content".
biodb.DEBUG[2024-05-04 16:05:34.094][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:05:34.096][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:34.097][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:34.097][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:34.102][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:34.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:34.104][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:34.105][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:34.106][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.109][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.112][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:34.113][private$selectFields]
biodb.TRACE[2024-05-04 16:05:34.114][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:34.115][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:34.116][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:34.116][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.117][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.119][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.120][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.121][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.122][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.123][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:34.124][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:34.124][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.125][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.127][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.128][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:05:34.129][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.132][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.135][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.139][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000001].
biodb.DEBUG[2024-05-04 16:05:34.139][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:34.140][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:34.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:34.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:34.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:34.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:34.148][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:34.149][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.152][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.155][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:34.156][private$selectFields]
biodb.TRACE[2024-05-04 16:05:34.157][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:34.157][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:34.158][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:34.159][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.160][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.175][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.176][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.177][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.178][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.179][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:34.180][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:34.181][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.181][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.183][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.184][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:05:34.185][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.189][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.194][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.197][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000002].
biodb.DEBUG[2024-05-04 16:05:34.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:34.199][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:34.200][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:34.205][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:34.206][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:34.206][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:34.207][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:34.208][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.211][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.214][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:34.215][private$selectFields]
biodb.TRACE[2024-05-04 16:05:34.216][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:34.216][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:34.217][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:34.218][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.219][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.220][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.221][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.222][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.224][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.225][private$selectFields] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:34.226][private$organizeFieldsByGroups] Fields [1]: "lipidmaps.structure.id"
biodb.TRACE[2024-05-04 16:05:34.226][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.227][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.229][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.230][private$organizeFieldsByGroups] Groups [2]: "lipidmaps.structure.id, list()"
biodb.TRACE[2024-05-04 16:05:34.230][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.234][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.237][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:34.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.240][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [lipidmaps.structure.id] [LMFA00000003].
biodb.DEBUG[2024-05-04 16:05:34.241][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:05:34.241][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-05-04 16:05:34.260][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-04 16:05:34.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-04 16:05:34.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.264][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-04 16:05:34.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-04 16:05:34.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.267][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-04 16:05:34.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-04 16:05:34.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-04 16:05:34.274][biodb::testThat]
biodb.INFO [2024-05-04 16:05:34.275][biodb::testThat] Running test function  test_annotateMzValues_additional_fields  (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2024-05-04 16:05:34.275][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-05-04 16:05:34.276][biodb::testThat]
biodb.TRACE[2024-05-04 16:05:34.279][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-04 16:05:34.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-04 16:05:34.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.282][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-04 16:05:34.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-04 16:05:34.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.286][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-05-04 16:05:34.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-05-04 16:05:34.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:05:34.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:05:34.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.293][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:05:34.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:05:34.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.296][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-05-04 16:05:34.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-05-04 16:05:34.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.300][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:34.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:34.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.303][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:34.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:34.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:34.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:34.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.310][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:34.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:34.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.313][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:34.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:34.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.316][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:34.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:34.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:34.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:34.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.323][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:34.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:34.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.327][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:34.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:34.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.330][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:34.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:34.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.334][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:34.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:34.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:34.338][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:34.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:34.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:34.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-05-04 16:05:34.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:34.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:34.345][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:34.350][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:34.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:34.351][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:34.352][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:05:34.355][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2024-05-04 16:05:34.358][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:05:34.360][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2024-05-04 16:05:34.361][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:05:34.389][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2024-05-04 16:05:35.435][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:05:35.437][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:35.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:35.438][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:35.443][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:35.444][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:35.445][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:35.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:35.447][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:35.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:35.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:35.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:35.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.453][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.456][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.463][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.466][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:35.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:35.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.470][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:35.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:35.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.473][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.476][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.480][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.483][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.486][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:35.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:35.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.490][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:35.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:35.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.493][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:35.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:35.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.497][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:35.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:35.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.500][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:35.501][private$selectFields]
biodb.TRACE[2024-05-04 16:05:35.501][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:35.502][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:35.503][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:35.504][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:35.505][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:35.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.506][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.507][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.508][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.510][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.511][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.512][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.513][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.514][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:35.515][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:35.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.516][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.517][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.518][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.520][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.521][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.522][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.523][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.524][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:35.525][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:35.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.526][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.527][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:35.528][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:35.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.529][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.530][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:35.531][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:35.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.533][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.534][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.535][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.536][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.537][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.538][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.539][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.540][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:35.541][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:35.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.543][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.544][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.544][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.546][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.546][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.547][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.549][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.550][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:35.551][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:35.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.552][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.553][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:35.554][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:35.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.555][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.556][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:35.557][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:35.558][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:35.559][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:35.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.560][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.561][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.562][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.564][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.565][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.566][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.567][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.568][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.569][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:35.570][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:35.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.571][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.572][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.573][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.574][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.575][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.576][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.577][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.578][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:35.579][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:35.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.581][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.581][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:35.582][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:35.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.584][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.585][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-05-04 16:05:35.586][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:35.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:35.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:35.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:35.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:35.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:35.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.596][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.599][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.602][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.606][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.613][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.617][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:35.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:35.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.620][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:35.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:35.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.624][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:35.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:35.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.627][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.631][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.634][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.637][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.641][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.644][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.647][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:35.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:35.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.650][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:35.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:35.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.654][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:35.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:35.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.658][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:35.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:35.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.661][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:35.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:35.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.665][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:35.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:35.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.674][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000001, 178363, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, ...].
biodb.DEBUG[2024-05-04 16:05:35.675][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:35.676][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:35.677][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:35.682][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:35.683][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:35.684][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:35.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:35.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:35.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:35.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.689][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:35.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:35.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.693][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.710][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.713][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.716][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.719][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:35.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:35.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.722][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:35.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:35.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.726][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.729][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.735][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.738][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:35.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:35.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.742][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:35.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:35.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.745][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:35.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:35.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.748][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:35.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:35.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.751][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:35.752][private$selectFields]
biodb.TRACE[2024-05-04 16:05:35.752][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:35.753][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:35.754][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:35.755][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:35.756][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:35.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.757][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.758][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.759][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.760][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.760][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.761][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.762][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.763][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.765][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:35.765][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:35.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.767][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.768][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.768][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.770][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.771][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.772][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.773][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.774][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:35.775][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:35.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.776][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.777][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:35.778][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:35.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.780][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.781][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:35.781][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:35.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.783][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.784][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.784][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.786][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.786][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.787][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.789][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.790][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:35.791][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:35.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.792][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.793][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.794][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.795][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.796][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.797][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.798][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.798][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.799][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.800][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:35.801][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:35.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.802][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.803][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:35.804][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:35.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.805][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.806][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:35.807][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:35.808][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:35.809][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:35.810][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.810][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.811][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.812][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.814][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.814][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.815][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.817][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.818][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:35.819][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:35.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.820][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.821][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.822][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.823][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.824][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.825][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.827][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.827][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:35.828][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:35.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.830][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.830][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:35.831][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:35.832][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.833][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.834][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-05-04 16:05:35.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:35.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:35.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:35.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:35.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:35.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:35.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.855][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.859][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.865][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:35.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:35.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.868][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:35.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:35.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.871][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:35.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:35.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.875][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.878][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.882][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.885][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.888][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.892][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.895][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:35.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:35.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.898][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:35.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:35.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.902][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:35.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:35.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.905][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:35.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:35.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.908][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:35.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:35.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.912][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:35.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:35.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.918][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000002, 137783, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, ...].
biodb.DEBUG[2024-05-04 16:05:35.919][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:35.920][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:35.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:35.926][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:35.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:35.927][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:35.928][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:35.929][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:35.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:35.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.933][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:35.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:35.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.936][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.939][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:35.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.943][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.946][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:35.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.949][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:35.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:35.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.953][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:35.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:35.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.966][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.970][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:35.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:35.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.980][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:35.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:35.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.983][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:35.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:35.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:35.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:35.986][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:35.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:36.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.003][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:36.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:36.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.006][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:36.007][private$selectFields]
biodb.TRACE[2024-05-04 16:05:36.008][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:36.009][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:36.010][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:36.010][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:36.011][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:36.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.013][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.014][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:36.015][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:36.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.018][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.021][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:36.022][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:36.023][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.023][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.024][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:36.025][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:36.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.027][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.028][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:36.029][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:36.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.030][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.031][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:36.032][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:36.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.033][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.034][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:36.035][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:36.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.036][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.037][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:36.038][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:36.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.039][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.040][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:36.041][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:36.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.043][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.044][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:36.044][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:36.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.046][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.047][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:36.048][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:36.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.049][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.050][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:36.051][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:36.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.052][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.053][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:36.054][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:36.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.056][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.056][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:36.057][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:36.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.059][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.060][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:36.060][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:36.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.062][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.063][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:36.064][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:36.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.066][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.066][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:36.067][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:36.068][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:36.069][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:36.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.070][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.071][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:36.072][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:36.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.074][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.074][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:36.075][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:36.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.077][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.077][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:36.078][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:36.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.080][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.081][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:36.081][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:36.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.083][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.084][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:36.085][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:36.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.086][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.087][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:36.088][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:36.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.089][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.090][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-05-04 16:05:36.091][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:36.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:36.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:36.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:36.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.097][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:36.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:36.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:36.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:36.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:36.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:36.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.108][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:36.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:36.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.111][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:36.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:36.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.114][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:36.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:36.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.118][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:36.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:36.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.121][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:36.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:36.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.124][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:36.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:36.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.128][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:36.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:36.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.131][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:36.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:36.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.135][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:36.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:36.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:36.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:36.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.142][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:36.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:36.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.145][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:36.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:36.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.148][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:36.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:36.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.152][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:36.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:36.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.155][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:36.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:36.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.158][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:36.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:36.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:36.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:36.164][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2024-05-04 16:05:36.165][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:05:36.166][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:05:36.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:36.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:36.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:36.175][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:36.176][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:36.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:36.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:05:36.180][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2024-05-04 16:05:36.183][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:05:36.184][cch$loadFileContent] Trying to load 1 files from cache: [1]: "367c47c562148006b92b77e8d975d711".
biodb.TRACE[2024-05-04 16:05:36.186][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:05:36.216][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content".
biodb.DEBUG[2024-05-04 16:05:37.071][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:05:37.072][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:37.073][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:37.074][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:37.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:37.079][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:37.080][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:37.081][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:37.082][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:37.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:37.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:37.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:37.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.089][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.092][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.099][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.103][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:37.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:37.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.106][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:37.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:37.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.110][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.113][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.117][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.142][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:37.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:37.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.145][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:37.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:37.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.148][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.152][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.155][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:37.156][private$selectFields]
biodb.TRACE[2024-05-04 16:05:37.156][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:37.157][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:37.158][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:37.159][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:37.160][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:37.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.161][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.162][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.163][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.164][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.165][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.166][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.168][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.168][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:37.169][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:37.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.171][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.172][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.172][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.174][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.175][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.175][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.177][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.178][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:37.179][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:37.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.180][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.181][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.182][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.183][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.184][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:37.185][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:37.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.187][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.187][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.188][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.190][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.191][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.192][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.193][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.194][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:37.195][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:37.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.197][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.198][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.199][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.200][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.201][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.202][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.204][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.205][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:37.205][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:37.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.207][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.208][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.209][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.210][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.211][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:37.212][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:37.213][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:37.213][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:37.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.215][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.216][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.217][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.218][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.219][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.220][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.221][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.222][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:37.223][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:37.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.224][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.225][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.226][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.228][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.229][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.229][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.231][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.232][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:37.233][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:37.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.234][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.235][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.236][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.237][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.238][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-05-04 16:05:37.239][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:37.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:37.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:37.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:37.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:37.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:37.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.250][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.253][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.256][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.259][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.267][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.270][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:37.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:37.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.274][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:37.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:37.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.277][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:37.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:37.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.280][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.284][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.287][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.294][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.301][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:37.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:37.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.304][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:37.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:37.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.307][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:37.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:37.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.311][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.314][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.317][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.324][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000001, 178363, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, ...].
biodb.DEBUG[2024-05-04 16:05:37.325][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:37.326][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:37.326][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:37.331][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:37.332][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:37.333][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:37.334][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:37.335][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:37.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:37.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:37.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:37.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.341][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.345][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.348][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.351][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.355][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:37.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:37.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.358][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:37.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:37.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.361][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.365][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.368][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.372][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.375][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:37.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:37.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.379][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:37.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:37.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.382][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.386][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.389][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:37.400][private$selectFields]
biodb.TRACE[2024-05-04 16:05:37.401][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:37.402][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:37.402][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:37.403][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:37.404][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:37.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.406][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.407][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.408][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.409][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.410][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.411][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.412][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.413][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:37.414][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:37.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.416][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.416][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.417][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.419][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.420][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.421][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.422][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.422][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.423][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:37.424][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:37.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.425][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.426][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.427][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.429][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.443][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:37.444][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:37.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.445][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.446][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.447][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.448][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.449][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.451][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.452][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.453][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:37.454][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:37.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.455][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.456][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.459][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.462][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.463][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.464][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.464][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.466][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.467][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:37.467][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:37.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.469][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.470][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.471][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.472][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.473][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:37.474][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:37.475][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:37.476][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:37.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.478][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.479][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.479][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.481][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.482][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.482][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.484][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.485][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:37.486][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:37.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.487][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.488][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.489][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.491][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.492][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.492][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.494][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.495][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:37.495][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:37.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.497][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.498][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.499][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.500][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.501][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-05-04 16:05:37.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:37.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:37.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:37.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:37.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.508][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:37.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:37.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.512][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.515][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.518][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.528][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.532][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:37.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:37.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.535][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:37.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:37.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.539][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:37.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:37.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.542][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.545][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.548][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.552][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.555][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.558][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.562][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:37.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:37.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.565][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:37.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:37.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.569][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:37.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:37.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.580][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.586][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000002, 137783, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, ...].
biodb.DEBUG[2024-05-04 16:05:37.587][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:37.588][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:37.589][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:37.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:37.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:37.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:37.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:37.598][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:37.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:37.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:37.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:37.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.604][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.608][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.611][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.618][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:37.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:37.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.622][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:37.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:37.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.625][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.628][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.632][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.639][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:37.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:37.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.643][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:37.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:37.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.646][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.650][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.653][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:37.654][private$selectFields]
biodb.TRACE[2024-05-04 16:05:37.654][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:37.656][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:37.656][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:37.657][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:37.658][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:37.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.660][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.661][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.661][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.663][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.664][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.665][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.665][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.666][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.667][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:37.668][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:37.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.670][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.671][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.682][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.684][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.685][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.685][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.687][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.688][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:37.689][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:37.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.691][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.691][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.693][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.694][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.695][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:37.696][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:37.697][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.697][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.698][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.699][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:37.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.701][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.702][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.703][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.704][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.705][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:37.706][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:37.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.707][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.708][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.709][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.711][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.711][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.712][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.714][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.715][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:37.715][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:37.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.717][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.718][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.718][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.720][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.721][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:37.722][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:37.723][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:37.724][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:37.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.725][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.726][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.727][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.729][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.730][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:37.730][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:37.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.732][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.733][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.734][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.735][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.736][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.737][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.739][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.739][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:37.741][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:37.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.742][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.743][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.744][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.746][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.746][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-05-04 16:05:37.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:37.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:37.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.751][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:37.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:37.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.754][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:37.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:37.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.758][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.761][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.765][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:37.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.768][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:37.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:37.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.772][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:37.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:37.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.775][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:37.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:37.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.778][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.781][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.785][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:37.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.791][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:37.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.798][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:37.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:37.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.801][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:37.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:37.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.805][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:37.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:37.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.808][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.812][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.815][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:37.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:37.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:37.821][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2024-05-04 16:05:37.834][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:05:37.835][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:05:37.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:37.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:37.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:37.844][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:37.844][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:37.845][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:37.846][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:05:37.850][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2024-05-04 16:05:37.853][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:05:37.854][cch$loadFileContent] Trying to load 1 files from cache: [1]: "276078a0b416eb2563e0b778607838d4".
biodb.TRACE[2024-05-04 16:05:37.855][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:05:37.886][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content".
biodb.DEBUG[2024-05-04 16:05:38.748][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:05:38.750][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:38.751][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:38.752][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:38.756][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:38.757][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:38.758][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:38.759][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:38.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:38.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:38.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.763][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:38.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:38.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.767][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:38.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:38.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.771][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:38.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:38.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:38.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:38.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:38.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:38.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.781][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:38.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:38.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.784][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:38.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:38.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.788][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:38.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:38.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.791][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:38.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:38.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:38.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:38.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:38.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:38.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.802][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:38.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:38.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.805][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:38.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:38.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.809][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:38.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:38.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.812][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:38.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:38.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.816][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:38.817][private$selectFields]
biodb.TRACE[2024-05-04 16:05:38.818][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:38.819][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:38.820][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:38.820][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:38.821][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:38.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.823][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.824][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:38.825][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:38.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.826][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.827][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:38.828][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:38.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.830][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.831][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:38.832][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:38.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.833][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.834][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:38.835][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:38.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.837][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.838][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:38.839][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:38.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.840][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.841][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:38.842][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:38.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.844][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.844][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:38.864][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:38.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.866][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.867][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:38.868][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:38.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.869][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.870][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:38.871][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:38.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.873][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.874][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:38.875][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:38.875][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.876][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.877][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:38.878][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:38.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.879][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.880][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:38.881][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:38.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.882][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.883][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:38.884][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:38.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.886][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.886][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:38.887][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:38.888][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.889][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.889][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:38.890][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:38.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.892][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.893][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:38.894][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:38.894][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:38.895][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:38.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.897][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.897][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:38.898][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:38.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.900][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.901][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:38.902][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:38.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.903][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.904][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:38.905][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:38.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.906][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.907][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:38.908][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:38.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.910][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.910][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:38.911][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:38.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.913][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.914][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:38.915][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:38.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.916][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.917][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:38.918][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:38.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.919][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.920][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-05-04 16:05:38.921][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:38.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:38.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:38.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:38.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.928][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:38.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:38.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.931][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:38.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:38.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.950][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:38.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:38.957][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.958][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:38.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:38.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:38.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:38.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.965][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:38.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:38.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.969][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:38.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:38.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.972][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:38.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:38.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.975][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:38.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:38.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.978][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:38.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:38.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.982][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:38.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:38.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.985][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:38.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:38.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.989][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:38.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:38.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.992][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:38.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:38.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.995][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:38.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:38.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:38.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:38.999][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:39.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:39.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.002][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:39.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:39.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.006][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:39.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:39.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.010][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:39.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:39.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.013][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.017][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.020][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.026][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000001, 178363, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, ...].
biodb.DEBUG[2024-05-04 16:05:39.027][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:39.028][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:39.029][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:39.034][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:39.035][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:39.036][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:39.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:39.038][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:39.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:39.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:39.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:39.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.044][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:39.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:39.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.048][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:39.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:39.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.051][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:39.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:39.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:39.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:39.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.057][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:39.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:39.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.061][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:39.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:39.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.064][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:39.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:39.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.068][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:39.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:39.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:39.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:39.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.074][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:39.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:39.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.077][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:39.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:39.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.081][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:39.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:39.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.084][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.091][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:39.092][private$selectFields]
biodb.TRACE[2024-05-04 16:05:39.093][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:39.093][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:39.094][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:39.095][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:39.096][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:39.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.098][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.099][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:39.099][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:39.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.101][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.102][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:39.103][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:39.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.104][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.105][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:39.106][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:39.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.108][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.109][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:39.109][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:39.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.111][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.112][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:39.113][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:39.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.114][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.115][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:39.116][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:39.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.118][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.118][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.119][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.120][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.121][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.122][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:39.123][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:39.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.125][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.125][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:39.126][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:39.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.128][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.129][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:39.130][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:39.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.131][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.132][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:39.133][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:39.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.134][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.135][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:39.146][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:39.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.148][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.149][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:39.150][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:39.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.152][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.153][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:39.154][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:39.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.155][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.156][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.157][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.159][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.159][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:39.160][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:39.161][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:39.162][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:39.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.163][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.165][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:39.165][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:39.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.167][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.168][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:39.169][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:39.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.170][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.171][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:39.172][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:39.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.174][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.174][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:39.175][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:39.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.177][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.178][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:39.178][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:39.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.180][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.181][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:39.182][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:39.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.183][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.184][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.185][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.186][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.187][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-05-04 16:05:39.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:39.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:39.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:39.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:39.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:39.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:39.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.198][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:39.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:39.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.201][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:39.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:39.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.205][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:39.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:39.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.208][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:39.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:39.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:39.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:39.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:39.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:39.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.218][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:39.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:39.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.222][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:39.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:39.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.225][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:39.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:39.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.228][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:39.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:39.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.232][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:39.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:39.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.235][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:39.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:39.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.238][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:39.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:39.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.242][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:39.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:39.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.245][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:39.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:39.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.248][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:39.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:39.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.252][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:39.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:39.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.255][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:39.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:39.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.259][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.262][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.265][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.272][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000002, 137783, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, ...].
biodb.DEBUG[2024-05-04 16:05:39.273][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:39.273][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:39.274][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:39.279][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:39.280][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:39.281][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:39.282][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:39.283][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:39.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:39.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.286][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:39.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:39.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.289][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:39.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:39.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.293][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:39.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:39.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.297][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:39.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:39.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:39.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:39.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.303][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:39.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:39.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.307][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:39.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:39.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.310][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:39.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:39.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.314][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:39.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:39.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.317][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:39.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:39.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.320][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:39.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:39.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.323][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:39.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:39.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.327][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:39.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:39.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.330][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.334][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.337][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:39.338][private$selectFields]
biodb.TRACE[2024-05-04 16:05:39.338][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:39.339][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:39.340][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:39.341][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:39.342][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:39.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.344][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.345][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:39.346][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:39.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.347][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.348][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:39.349][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:39.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.350][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.351][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:39.352][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:39.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.353][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.354][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:39.355][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:39.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.357][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.358][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:39.359][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:39.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.360][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.361][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:39.362][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:39.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.363][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.364][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.365][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.367][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.367][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:39.368][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:39.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.370][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.371][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:39.372][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:39.373][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.374][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.375][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:39.375][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:39.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.377][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.378][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:39.379][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:39.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.380][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.381][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:39.382][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:39.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.383][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.384][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:39.385][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:39.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.387][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.387][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:39.388][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:39.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.390][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.391][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.392][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.394][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.394][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:39.395][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:39.396][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:39.397][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:39.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.398][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.410][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:39.411][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:39.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.412][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.413][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:39.414][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:39.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.415][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.416][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:39.417][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:39.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.439][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.440][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:39.441][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:39.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.443][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.444][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:39.445][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:39.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.446][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.447][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.448][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.449][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.450][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-05-04 16:05:39.451][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:39.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:39.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:39.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:39.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.457][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:39.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:39.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.461][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:39.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:39.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.465][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:39.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:39.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.468][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:39.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:39.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.471][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:39.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:39.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.474][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:39.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:39.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.477][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:39.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:39.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.481][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:39.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:39.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.484][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:39.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:39.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.487][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:39.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:39.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.490][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:39.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:39.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.493][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:39.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:39.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.497][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:39.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:39.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.500][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:39.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:39.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.503][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:39.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:39.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.507][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:39.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:39.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.511][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.514][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.517][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:39.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:39.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:39.523][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2024-05-04 16:05:39.524][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:05:39.525][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:05:39.532][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:39.533][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:39.533][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:39.539][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:39.540][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:39.541][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:39.541][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:05:39.544][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=626.491025&ExactMassOffSet=0.01".
biodb.DEBUG[2024-05-04 16:05:39.547][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:05:39.548][cch$loadFileContent] Trying to load 1 files from cache: [1]: "f4acf835cb23946f08f684530aa686a3".
biodb.TRACE[2024-05-04 16:05:39.549][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:05:39.580][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/f4acf835cb23946f08f684530aa686a3.content".
biodb.DEBUG[2024-05-04 16:05:40.426][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:05:40.428][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:40.429][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:40.431][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:40.436][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:40.437][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:40.438][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:40.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:40.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:40.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:40.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:40.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:40.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.446][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.450][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.453][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.460][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:40.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:40.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.463][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:40.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:40.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.466][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:40.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:40.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.470][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:40.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:40.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.473][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:40.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:40.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.477][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:40.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:40.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.480][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:40.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:40.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.484][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:40.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:40.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.487][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:40.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:40.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.490][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:40.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:40.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.494][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:40.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:40.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.497][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:40.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:40.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.501][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-05-04 16:05:40.501][private$selectFields]
biodb.TRACE[2024-05-04 16:05:40.502][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:40.503][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:40.504][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-05-04 16:05:40.505][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:40.506][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:40.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.507][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.508][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.509][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.511][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.511][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.512][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.514][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.515][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:40.516][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:40.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.517][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.518][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:40.519][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:40.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.521][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.522][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:40.522][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:40.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.524][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.525][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:40.526][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:40.526][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.527][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.528][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:40.529][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:40.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.530][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.531][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:40.532][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:40.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.534][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.534][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:40.535][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:40.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.537][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.538][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.538][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.540][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.541][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.542][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.543][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.544][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:40.545][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:40.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.546][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.547][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:40.548][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:40.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.550][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.550][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:40.551][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:40.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.553][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.554][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:40.555][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:40.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.557][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.557][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:40.558][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:40.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.560][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.579][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:40.580][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:40.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.582][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.583][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:40.584][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:40.585][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:40.586][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:40.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.587][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.588][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.589][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.591][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.591][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.592][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.594][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.595][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:40.596][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:40.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.597][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.598][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:40.599][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:40.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.601][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.601][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:40.603][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:40.603][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.604][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.605][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:40.606][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:40.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.608][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.608][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:40.609][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:40.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.611][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.612][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-05-04 16:05:40.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:40.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:40.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:40.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:40.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.619][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:40.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:40.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.623][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.626][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.630][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.637][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.640][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.644][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:40.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:40.645][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.646][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.647][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:40.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:40.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.651][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:40.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:40.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.654][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:40.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:40.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.657][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:40.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:40.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.660][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:40.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:40.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.664][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:40.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:40.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.667][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:40.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:40.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.670][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:40.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:40.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.674][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:40.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:40.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.677][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:40.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:40.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.680][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:40.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:40.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.684][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:40.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:40.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.687][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:40.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:40.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.691][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:40.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:40.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.697][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000001, 178363, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, ...].
biodb.DEBUG[2024-05-04 16:05:40.698][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:40.699][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:40.699][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:40.704][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:40.705][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:40.706][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:40.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:40.708][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:40.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:40.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.711][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:40.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:40.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.714][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.717][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.727][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:40.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:40.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.731][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:40.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:40.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.734][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:40.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:40.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.738][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:40.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:40.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.741][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:40.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:40.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.744][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:40.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:40.746][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.747][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:40.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:40.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.751][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:40.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:40.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.754][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:40.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:40.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.757][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:40.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:40.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.761][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:40.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:40.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.764][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:40.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:40.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.768][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-05-04 16:05:40.768][private$selectFields]
biodb.TRACE[2024-05-04 16:05:40.769][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:40.770][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:40.771][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-05-04 16:05:40.772][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:40.773][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:40.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.774][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.775][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.776][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.777][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.778][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.779][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.781][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.781][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:40.782][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:40.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.784][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.785][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:40.786][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:40.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.787][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.788][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:40.789][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:40.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.790][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.791][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:40.792][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:40.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.794][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.794][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:40.795][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:40.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.797][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.798][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:40.799][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:40.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.800][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.801][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:40.802][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:40.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.804][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.804][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.805][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.807][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.808][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.809][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.810][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.811][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:40.812][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:40.813][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.813][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.814][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:40.815][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:40.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.817][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.817][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:40.818][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:40.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.820][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.821][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:40.822][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:40.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.823][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.824][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:40.825][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:40.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.827][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.827][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:40.828][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:40.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.830][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.841][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:40.842][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:40.843][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:40.844][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:40.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.845][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.846][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.847][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.848][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.849][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.850][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.852][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.852][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:40.866][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:40.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.868][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.869][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:40.870][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:40.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.872][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.873][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:40.874][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:40.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.875][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.876][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:40.877][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:40.878][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.878][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.879][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:40.881][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:40.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.885][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.886][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-05-04 16:05:40.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:40.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:40.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:40.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:40.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.894][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:40.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:40.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.897][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.901][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.904][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.908][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.911][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.915][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.918][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:40.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:40.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.922][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:40.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:40.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.925][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:40.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:40.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.928][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:40.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:40.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.932][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:40.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:40.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.935][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:40.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:40.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.938][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:40.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:40.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.941][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:40.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:40.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.945][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:40.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:40.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.948][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:40.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:40.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.951][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:40.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:40.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.954][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:40.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:40.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.958][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:40.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:40.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.961][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:40.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:40.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.964][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:40.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:40.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.970][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000002, 137783, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, ...].
biodb.DEBUG[2024-05-04 16:05:40.971][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:40.972][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:40.973][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:40.978][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:40.979][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:40.980][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:40.980][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:40.981][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:40.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:40.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.985][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:40.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:40.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.988][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.991][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:40.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.995][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:40.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:40.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:40.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.001][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:41.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:41.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.004][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:41.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:41.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.008][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:41.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:41.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.011][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:41.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:41.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.014][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:41.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:41.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.017][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:41.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:41.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.021][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:41.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:41.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.024][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:41.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:41.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.027][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:41.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:41.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.031][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:41.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:41.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.034][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:41.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:41.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.037][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:41.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:41.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.041][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-05-04 16:05:41.041][private$selectFields]
biodb.TRACE[2024-05-04 16:05:41.042][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:41.043][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:41.044][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-05-04 16:05:41.045][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:41.046][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:41.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.047][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.048][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:41.049][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:41.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.050][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.051][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:41.052][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:41.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.054][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.054][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:41.055][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:41.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.057][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.058][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:41.058][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:41.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.060][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.061][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:41.062][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:41.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.063][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.064][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:41.065][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:41.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.066][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.067][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:41.068][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:41.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.070][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.070][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:41.071][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:41.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.073][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.074][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:41.075][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:41.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.076][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.077][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:41.078][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:41.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.079][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.080][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:41.081][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:41.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.083][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.083][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:41.084][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:41.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.086][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.087][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:41.088][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:41.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.089][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.090][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:41.091][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:41.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.092][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.093][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:41.094][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:41.095][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.096][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.097][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:41.098][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:41.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.099][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.100][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:41.101][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:41.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.102][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.103][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:41.104][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:41.105][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:41.116][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:41.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.118][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.119][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:41.120][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:41.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.121][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.122][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:41.123][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:41.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.125][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.125][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:41.126][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:41.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.128][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.129][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:41.130][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:41.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.131][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.132][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:41.133][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:41.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.134][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.135][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:41.136][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:41.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.137][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.138][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-05-04 16:05:41.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:41.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:41.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:41.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:41.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:41.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:41.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.149][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:41.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:41.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.153][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:41.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:41.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:41.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:41.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.159][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:41.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:41.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.163][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:41.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:41.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.166][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:41.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:41.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.169][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:41.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:41.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.173][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:41.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:41.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.176][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:41.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:41.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.179][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:41.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:41.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.182][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:41.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:41.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.186][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:41.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:41.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.189][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:41.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:41.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.192][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:41.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:41.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.195][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:41.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:41.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.199][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:41.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:41.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.202][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:41.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:41.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.205][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:41.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:41.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:41.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:41.211][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2024-05-04 16:05:41.212][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:05:41.213][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:05:41.215][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:41.216][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:41.217][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:41.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:41.223][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:41.224][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:41.224][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:05:41.227][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=275.173274&ExactMassOffSet=0.01".
biodb.DEBUG[2024-05-04 16:05:41.230][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:05:41.231][cch$loadFileContent] Trying to load 1 files from cache: [1]: "367c47c562148006b92b77e8d975d711".
biodb.TRACE[2024-05-04 16:05:41.232][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:05:41.262][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/367c47c562148006b92b77e8d975d711.content".
biodb.DEBUG[2024-05-04 16:05:42.102][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:05:42.104][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:42.105][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:42.106][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:42.111][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:42.112][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:42.113][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:42.114][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:42.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:42.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:42.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.118][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:42.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:42.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.121][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.125][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.132][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.135][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:42.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:42.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.139][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:42.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:42.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.142][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.145][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.149][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.152][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.156][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:42.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:42.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.159][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:42.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:42.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.162][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.165][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.169][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:42.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:42.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.172][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:42.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:42.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.176][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-05-04 16:05:42.176][private$selectFields]
biodb.TRACE[2024-05-04 16:05:42.177][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:42.178][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:42.179][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-05-04 16:05:42.180][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:42.181][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:42.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.182][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.183][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.184][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.186][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.186][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.187][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.189][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.189][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:42.190][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:42.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.192][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.193][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.194][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.195][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.196][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.197][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.199][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.200][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:42.201][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:42.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.202][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.203][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.204][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.206][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.206][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:42.207][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:42.208][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.209][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.210][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:42.211][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:42.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.212][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.213][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.214][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.215][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.216][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.217][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.219][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.220][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:42.220][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:42.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.222][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.223][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.224][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.225][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.226][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.227][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.229][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.229][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:42.230][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:42.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.232][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.233][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.233][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.235][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.236][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:42.237][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:42.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.258][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.259][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:42.260][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:42.261][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:42.262][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:42.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.263][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.264][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.265][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.266][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.267][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.268][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.269][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.270][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.270][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:42.271][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:42.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.273][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.274][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.275][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.276][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.277][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.278][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.279][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.280][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:42.281][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:42.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.283][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.283][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.284][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.286][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.287][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-05-04 16:05:42.287][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:42.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:42.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:42.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:42.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.294][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:42.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:42.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.297][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.301][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.307][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.317][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:42.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:42.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.321][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:42.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:42.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.324][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:42.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:42.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.327][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.330][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.334][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.337][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.340][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.343][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.347][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:42.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:42.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.350][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:42.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:42.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.353][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:42.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:42.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.356][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.360][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.363][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.369][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000001, 178363, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, ...].
biodb.DEBUG[2024-05-04 16:05:42.370][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:42.371][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:42.372][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:42.377][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:42.392][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:42.393][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:42.394][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:42.395][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:42.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:42.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:42.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:42.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.401][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.405][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.412][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.418][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:42.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:42.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.421][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:42.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:42.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.424][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.428][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.434][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.438][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:42.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:42.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.441][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:42.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:42.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.448][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.451][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:42.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:42.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.455][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:42.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:42.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.459][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-05-04 16:05:42.459][private$selectFields]
biodb.TRACE[2024-05-04 16:05:42.460][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:42.461][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:42.462][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-05-04 16:05:42.463][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:42.463][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:42.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.465][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.466][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.467][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.468][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.469][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.470][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.472][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.472][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:42.473][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:42.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.475][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.476][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.477][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.478][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.479][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.480][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.481][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.482][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:42.483][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:42.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.485][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.485][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.486][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.488][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.489][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:42.489][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:42.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.491][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.492][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:42.493][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:42.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.494][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.495][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.496][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.498][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.498][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.499][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.501][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.502][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:42.503][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:42.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.504][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.505][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.506][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.508][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.508][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.509][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.511][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.512][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:42.512][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:42.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.514][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.515][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.516][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.517][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.518][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:42.519][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:42.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.520][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.521][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:42.536][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:42.537][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:42.538][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:42.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.540][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.541][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.542][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.543][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.544][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.545][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.547][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.547][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:42.548][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:42.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.550][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.551][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.552][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.553][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.554][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.555][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.556][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.556][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.557][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:42.558][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:42.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.559][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.560][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.561][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.563][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.563][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-05-04 16:05:42.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:42.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:42.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:42.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:42.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:42.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:42.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.574][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.577][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.580][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.587][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.593][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:42.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:42.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.597][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:42.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:42.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.600][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:42.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:42.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.603][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.606][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.609][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.616][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.622][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:42.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:42.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.625][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:42.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:42.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.629][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:42.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:42.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.632][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.635][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.638][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.644][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000002, 137783, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, ...].
biodb.DEBUG[2024-05-04 16:05:42.645][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:42.646][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:42.647][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:42.651][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:42.652][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:42.653][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:42.654][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:42.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:42.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:42.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.658][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:42.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:42.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.661][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.664][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.671][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.674][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:42.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:42.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.677][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:42.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:42.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.680][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.683][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.686][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.693][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:42.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:42.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.697][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:42.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:42.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.700][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.704][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.707][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:42.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:42.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.710][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:42.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:42.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.714][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-05-04 16:05:42.714][private$selectFields]
biodb.TRACE[2024-05-04 16:05:42.715][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:42.716][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:42.717][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-05-04 16:05:42.718][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:42.719][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:42.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.720][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.721][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.722][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.724][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.724][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.725][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.727][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.728][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:42.728][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:42.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.730][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.731][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.732][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.733][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.733][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.734][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.735][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.737][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.737][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:42.738][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:42.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.740][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.741][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.742][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.743][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.744][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:42.745][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:42.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.746][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.747][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:42.748][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:42.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.749][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.750][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.751][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:42.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.753][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.754][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.755][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.756][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.757][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:42.758][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:42.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.760][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.760][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.761][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.763][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.764][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.764][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.765][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.766][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.767][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:42.768][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:42.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.769][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.770][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.771][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.771][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.772][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.773][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:42.774][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:42.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.775][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.776][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:42.777][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:42.778][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:42.779][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:42.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.780][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.791][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.792][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.794][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.794][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:42.795][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:42.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.797][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.797][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.798][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.800][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.801][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.801][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.803][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.803][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:42.804][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:42.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.806][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.806][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.807][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.808][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.809][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.810][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-05-04 16:05:42.811][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:42.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:42.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:42.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:42.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.817][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:42.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:42.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.820][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.823][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.826][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:42.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.830][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:42.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:42.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.833][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:42.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:42.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.836][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:42.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:42.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.840][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.843][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.846][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:42.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.849][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.853][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.856][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:42.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.859][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:42.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:42.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.863][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:42.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:42.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.866][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:42.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:42.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.869][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.872][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.876][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:42.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:42.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:42.881][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2024-05-04 16:05:42.882][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:05:42.883][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-05-04 16:05:42.885][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:42.885][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:42.886][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:42.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:42.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:42.893][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:42.894][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-05-04 16:05:42.897][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://www.lipidmaps.org/data/structure/LMSDSearch.php?Mode=ProcessStrSearch&OutputMode=File&OutputType=TSV&ExactMass=299.282429&ExactMassOffSet=0.01".
biodb.DEBUG[2024-05-04 16:05:42.899][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-05-04 16:05:42.900][cch$loadFileContent] Trying to load 1 files from cache: [1]: "276078a0b416eb2563e0b778607838d4".
biodb.TRACE[2024-05-04 16:05:42.901][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-05-04 16:05:42.930][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/lipidmaps.structure-ccd4263a0c0fd7a1cb4329cb919bd54b/276078a0b416eb2563e0b778607838d4.content".
biodb.DEBUG[2024-05-04 16:05:43.769][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-05-04 16:05:43.771][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:43.772][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:43.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:43.778][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:43.778][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:43.779][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:43.780][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:43.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:43.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:43.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:43.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:43.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.788][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:43.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:43.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.791][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:43.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:43.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.794][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:43.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:43.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.797][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:43.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:43.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.800][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:43.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:43.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.803][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:43.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:43.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.806][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:43.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:43.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.810][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:43.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:43.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:43.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:43.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.816][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:43.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:43.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.820][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:43.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:43.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.823][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:43.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:43.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.826][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:43.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:43.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.829][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:43.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:43.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.833][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:43.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:43.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.836][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:43.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:43.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.839][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-05-04 16:05:43.840][private$selectFields]
biodb.TRACE[2024-05-04 16:05:43.841][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:43.841][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:43.842][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-05-04 16:05:43.843][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:43.844][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:43.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.845][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.846][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:43.847][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:43.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.848][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.849][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:43.850][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:43.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.852][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.852][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:43.853][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:43.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.855][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.856][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:43.857][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:43.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.858][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.859][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:43.860][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:43.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.861][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.862][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:43.863][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:43.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.864][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.865][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:43.866][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:43.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.868][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.868][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:43.869][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:43.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.871][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.872][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:43.872][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:43.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.874][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.875][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:43.876][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:43.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.877][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.878][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:43.879][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:43.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.880][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.881][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:43.882][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:43.883][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.884][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.885][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:43.886][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:43.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.887][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.888][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:43.889][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:43.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.890][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.891][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:43.892][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:43.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.893][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.894][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:43.895][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:43.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.897][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.898][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:43.899][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:43.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.900][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.901][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:43.920][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:43.921][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:43.921][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:43.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.923][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.924][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:43.924][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:43.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.926][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.927][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:43.928][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:43.928][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.929][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.930][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:43.931][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:43.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.932][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.933][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:43.934][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:43.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.935][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.936][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:43.937][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:43.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.938][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.939][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:43.940][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:43.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.942][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.943][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:43.944][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:43.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.945][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.946][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-05-04 16:05:43.947][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:43.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:43.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.950][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:43.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:43.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.953][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:43.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:43.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.957][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:43.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:43.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.960][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:43.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:43.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.963][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:43.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:43.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:43.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:43.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.970][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:43.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:43.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.973][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:43.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:43.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.977][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:43.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:43.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.980][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:43.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:43.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.983][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:43.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:43.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.987][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:43.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:43.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.990][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:43.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:43.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.993][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:43.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:43.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:43.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:43.997][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:43.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:43.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.004][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.007][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:44.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:44.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.011][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:44.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:44.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.014][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:44.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:44.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.017][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.021][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.024][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.030][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000001, 178363, 2-methoxy-12-methyloctadec-17-en-5-ynoyl anhydride, C40H66O5, LMFA00000001, ...].
biodb.DEBUG[2024-05-04 16:05:44.031][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:44.032][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:44.032][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:44.038][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:44.038][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:44.039][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:44.040][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:44.041][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:44.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:44.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:44.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:44.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.047][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:44.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:44.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.051][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:44.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:44.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:44.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:44.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:44.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:44.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.061][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:44.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:44.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.064][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:44.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:44.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.068][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:44.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:44.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.071][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:44.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:44.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.075][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.078][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.081][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:44.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:44.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.084][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:44.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:44.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.091][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.094][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:44.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:44.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.098][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:44.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:44.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.101][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-05-04 16:05:44.102][private$selectFields]
biodb.TRACE[2024-05-04 16:05:44.103][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:44.104][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:44.104][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-05-04 16:05:44.105][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:44.106][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:44.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.108][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.108][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:44.109][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:44.110][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.111][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.112][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:44.113][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:44.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.114][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.115][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:44.116][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:44.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.118][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.119][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:44.120][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:44.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.121][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.122][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.123][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.125][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.125][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:44.126][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:44.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.128][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.129][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.130][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.131][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.132][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:44.133][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:44.134][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.134][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.135][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:44.136][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:44.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.138][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.138][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:44.139][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:44.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.141][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.142][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:44.143][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:44.143][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.144][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.145][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:44.146][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:44.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.147][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.148][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:44.149][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:44.150][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.151][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.152][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.152][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.153][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.154][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.155][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:44.156][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:44.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.157][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.158][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.159][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.161][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.161][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:44.162][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:44.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.164][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.165][private$selectFields] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:44.166][private$organizeFieldsByGroups] Fields [8]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:44.166][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:44.167][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:44.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.180][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.180][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:44.181][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:44.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.183][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.184][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:44.185][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:44.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.187][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.188][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:44.189][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:44.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.190][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.191][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:44.192][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:44.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.194][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.195][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.195][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.197][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.198][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:44.199][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:44.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.200][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.201][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.202][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.203][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.204][private$organizeFieldsByGroups] Groups [2]: "c("accession", "chebi.id", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-05-04 16:05:44.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:44.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:44.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.208][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:44.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:44.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:44.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:44.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.215][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:44.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:44.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.218][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:44.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:44.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.221][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:44.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:44.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.224][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:44.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:44.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.228][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:44.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:44.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.231][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:44.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:44.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.234][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:44.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:44.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.237][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:44.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:44.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.241][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:44.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:44.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.244][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:44.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:44.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.247][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:44.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:44.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.250][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:44.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:44.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.254][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.264][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:44.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:44.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.267][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:44.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:44.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.270][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:44.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:44.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.273][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.280][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.286][private$entriesToListOfDataframes] Entry converted to data frame: [1, 8]: [accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, ...] [LMFA00000002, 137783, N-(3S-hydroxydecanoyl)-L-serine, C13H25NO5, LMFA00000002, ...].
biodb.DEBUG[2024-05-04 16:05:44.287][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-05-04 16:05:44.288][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:44.288][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:44.293][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:44.294][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:44.295][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:44.296][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-05-04 16:05:44.297][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:44.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:44.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:44.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:44.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.304][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:44.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:44.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.308][self$getBiodb()$getEntryFields()$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:44.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:44.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:44.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:44.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:44.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:44.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.318][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:44.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:44.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.321][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:44.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:44.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.325][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:44.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:44.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.329][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:44.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:44.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.352][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.356][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:44.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:44.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.359][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:44.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:44.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.364][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.368][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.372][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:44.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:44.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.375][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:44.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:44.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.379][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-05-04 16:05:44.379][private$selectFields]
biodb.TRACE[2024-05-04 16:05:44.380][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-05-04 16:05:44.381][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-05-04 16:05:44.382][private$selectFields] Fields [9]: "accession, chebi.id, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id, peak.attr"
biodb.TRACE[2024-05-04 16:05:44.383][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:44.384][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:44.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.385][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.386][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:44.387][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:44.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.389][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.390][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:44.390][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:44.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.392][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.393][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:44.394][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:44.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.395][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.396][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:44.397][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:44.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.398][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.399][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.400][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.401][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.402][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:44.403][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:44.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.405][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.406][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.407][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.409][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.410][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:44.410][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:44.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.412][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.413][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:44.414][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:44.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.415][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.416][ef$get] Asked field names are: chebi.id.
biodb.TRACE[2024-05-04 16:05:44.417][ef$get] Realnames of fields are: chebi.id.
biodb.TRACE[2024-05-04 16:05:44.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.418][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.419][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:44.420][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:44.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.422][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.423][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:44.424][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:44.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.425][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.427][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:44.428][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:44.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.429][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.430][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.431][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.432][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.433][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.434][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:44.435][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:44.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.436][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.437][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.438][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.439][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.440][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-05-04 16:05:44.441][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-05-04 16:05:44.442][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.443][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.444][private$selectFields] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:44.445][private$organizeFieldsByGroups] Fields [7]: "accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, name, ncbi.pubchem.comp.id"
biodb.TRACE[2024-05-04 16:05:44.446][ef$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:44.447][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:44.447][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.448][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.449][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:44.450][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:44.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.462][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.463][ef$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:44.464][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:44.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.465][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.466][ef$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:44.467][ef$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:44.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.468][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.469][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.470][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.472][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.472][ef$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:44.473][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:44.474][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.475][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.476][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.477][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.478][ef$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.479][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.syst", "formula", "lipidmaps.structure.id", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id"), list()"
biodb.TRACE[2024-05-04 16:05:44.480][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:44.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:44.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:44.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:44.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-05-04 16:05:44.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-05-04 16:05:44.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.490][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:44.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:44.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.493][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:44.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:44.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.496][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:44.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-05-04 16:05:44.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.499][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:44.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:44.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.503][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:44.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:44.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.506][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-05-04 16:05:44.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-05-04 16:05:44.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.509][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:44.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:44.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.512][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:44.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:44.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.516][self$getBiodb()$getEntryFields()$get] Asked field names are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:44.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: lipidmaps.structure.id.
biodb.TRACE[2024-05-04 16:05:44.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.522][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.525][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-05-04 16:05:44.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.529][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:44.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:44.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.532][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:44.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:44.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.535][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-05-04 16:05:44.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-05-04 16:05:44.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.538][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.542][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.545][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-05-04 16:05:44.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.551][private$entriesToListOfDataframes] Entry converted to data frame: [1, 7]: [accession, comp.iupac.name.syst, formula, lipidmaps.structure.id, monoisotopic.mass, ...] [LMFA00000003, N-(3-(hexadecanoyloxy)-heptadecanoyl)-L-ornithine, C38H74N2O5, LMFA00000003, 638.559773, ...].
biodb.DEBUG[2024-05-04 16:05:44.552][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-05-04 16:05:44.553][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-05-04 16:05:44.557][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-04 16:05:44.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-04 16:05:44.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.561][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-04 16:05:44.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-04 16:05:44.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-05-04 16:05:44.564][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-05-04 16:05:44.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-05-04 16:05:44.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-05-04 16:05:44.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-05-04 16:05:44.571][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-05-04 16:05:44.572][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector lipidmaps.structure from the request scheduler
biodb.INFO [2024-05-04 16:05:44.573][self$deleteConn] Connector "lipidmaps.structure" deleted.
biodb.DEBUG[2024-05-04 16:05:44.573][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-05-04 16:05:44.574][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-05-04 16:05:44.575][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-05-04 16:05:44.576][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-05-04 16:05:44.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-05-04 16:05:44.577][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-05-04 16:05:44.578][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 0 | SKIP 0 | PASS 375 ]
> 
> proc.time()
   user  system elapsed 
 53.020   5.106 254.483 

'R CMD check' output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbLipidmaps_1.10.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbLipidmaps.Rcheck’
* using R version 4.4.0 beta (2024-04-14 r86421)
* using platform: x86_64-apple-darwin20
* R was compiled by
    Apple clang version 14.0.0 (clang-1400.0.29.202)
    GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.1
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbLipidmaps/DESCRIPTION’ ... OK
* this is package ‘biodbLipidmaps’ version ‘1.10.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbLipidmaps’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking whether startup messages can be suppressed ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... OK
* checking tests in ‘longtests’ ...
  Running ‘testthat.R’
 OK
* DONE

Status: OK


Installation output

biodbLipidmaps.Rcheck/00install.out

* installing *source* package ‘biodbLipidmaps’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning in fun(libname, pkgname) :
  Package 'biodbLipidmaps' is deprecated and will be removed from
  Bioconductor version 3.20
** testing if installed package can be loaded from final location
Warning in fun(libname, pkgname) :
  Package 'biodbLipidmaps' is deprecated and will be removed from
  Bioconductor version 3.20
** testing if installed package keeps a record of temporary installation path
* DONE (biodbLipidmaps)