| Back to Long Tests report for BioC 3.19 |
This page was generated on 2024-07-13 23:55 -0400 (Sat, 13 Jul 2024).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4741 |
| palomino7 | Windows Server 2022 Datacenter | x64 | 4.4.1 (2024-06-14 ucrt) -- "Race for Your Life" | 4483 |
| merida1 | macOS 12.7.4 Monterey | x86_64 | 4.4.1 (2024-06-14) -- "Race for Your Life" | 4512 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
| Package 11/33 | Hostname | OS / Arch | CHECK | |||||||
| biodbNcbi 1.8.0 (landing page) Pierrick Roger
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | ERROR | |||||||
| palomino7 | Windows Server 2022 Datacenter / x64 | WARNINGS | ||||||||
| merida1 | macOS 12.7.4 Monterey / x86_64 | WARNINGS | ||||||||
|
To the developers/maintainers of the biodbNcbi package: - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
| Package: biodbNcbi |
| Version: 1.8.0 |
| Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.8.0.tar.gz |
| StartedAt: 2024-07-13 16:02:38 -0400 (Sat, 13 Jul 2024) |
| EndedAt: 2024-07-13 16:05:01 -0400 (Sat, 13 Jul 2024) |
| EllapsedTime: 142.6 seconds |
| RetCode: 0 |
| Status: WARNINGS |
| CheckDir: biodbNcbi.Rcheck |
| Warnings: 1 |
biodbNcbi.Rcheck/tests/testthat.Rout
R version 4.4.1 (2024-06-14) -- "Race for Your Life"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin20
R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.
R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.
Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.
> # Script needed to run testthat automatically from ‘R CMD check’. See
> # testthat::test_dir documentation.
> library(testthat)
> library(biodbNci)
> Sys.setenv(TESTTHAT_REPORTER="summary")
> Sys.setenv(BIODB_LOG_DST="console")
> test_check("biodbNcbi")
Loading required package: biodbNcbi
biodb.INFO [2024-07-13 16:03:34.912][biodb::testContext]
biodb.INFO [2024-07-13 16:03:34.916][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-13 16:03:34.918][biodb::testContext] Test context - CCDS long tests
biodb.INFO [2024-07-13 16:03:34.919][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-13 16:03:34.920][biodb::testContext]
biodb.INFO [2024-07-13 16:03:34.928][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-07-13 16:03:34.930][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-13 16:03:34.938][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-13 16:03:34.940][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-13 16:03:34.941][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-13 16:03:34.942][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:34.943][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:34.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:34.946][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-13 16:03:34.971][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-13 16:03:34.972][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:34.974][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:34.975][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:34.976][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-13 16:03:34.977][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-13 16:03:34.978][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:34.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:34.981][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:34.982][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-13 16:03:34.983][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-13 16:03:34.984][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-13 16:03:34.985][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:34.987][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:34.988][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:34.989][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-13 16:03:34.990][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-13 16:03:34.991][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-13 16:03:34.992][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:34.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:34.995][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:34.996][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-13 16:03:34.997][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-13 16:03:34.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:34.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.002][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-13 16:03:35.003][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-13 16:03:35.004][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-13 16:03:35.005][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.006][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.007][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.009][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-13 16:03:35.010][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-13 16:03:35.011][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.012][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.013][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.014][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-13 16:03:35.016][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-13 16:03:35.017][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-13 16:03:35.018][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.020][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.021][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-13 16:03:35.023][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-13 16:03:35.024][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-13 16:03:35.025][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-13 16:03:35.026][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-13 16:03:35.028][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-13 16:03:35.029][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.030][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.031][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.032][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-13 16:03:35.034][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-13 16:03:35.035][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.037][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.038][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-13 16:03:35.039][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-13 16:03:35.040][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.041][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.043][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.044][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-13 16:03:35.045][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-13 16:03:35.046][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.047][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.048][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.050][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-13 16:03:35.051][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-13 16:03:35.052][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.053][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.054][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.055][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-13 16:03:35.057][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-13 16:03:35.058][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.060][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.061][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-13 16:03:35.063][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-13 16:03:35.073][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-13 16:03:35.074][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.075][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.078][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-13 16:03:35.079][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-13 16:03:35.080][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-13 16:03:35.081][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.082][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.088][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-13 16:03:35.138][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-13 16:03:35.160][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-13 16:03:35.161][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.162][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-13 16:03:35.163][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.165][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-13 16:03:35.166][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-13 16:03:35.167][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-13 16:03:35.168][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-13 16:03:35.170][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-13 16:03:35.171][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.172][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-13 16:03:35.174][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-13 16:03:35.175][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:35.176][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.177][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-13 16:03:35.177][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-13 16:03:35.177][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-13 16:03:35.177][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-13 16:03:35.177][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-13 16:03:35.179][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-13 16:03:35.180][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:03:35.181][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:03:35.182][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-13 16:03:35.183][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:03:35.184][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:03:35.186][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-13 16:03:35.187][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:35.188][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-13 16:03:35.189][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-13 16:03:35.190][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-13 16:03:35.191][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:35.193][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-13 16:03:35.195][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-13 16:03:35.196][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-13 16:03:35.198][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.199][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-13 16:03:35.200][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.201][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-13 16:03:35.203][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-13 16:03:35.204][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-13 16:03:35.205][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-13 16:03:35.206][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-13 16:03:35.208][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.209][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-13 16:03:35.210][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-13 16:03:35.211][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:35.212][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.214][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-13 16:03:35.214][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-13 16:03:35.214][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-13 16:03:35.214][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-13 16:03:35.214][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-13 16:03:35.215][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-13 16:03:35.216][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:03:35.217][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:03:35.219][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-13 16:03:35.220][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:03:35.221][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:03:35.222][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-13 16:03:35.223][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:35.225][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-13 16:03:35.226][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-13 16:03:35.227][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-13 16:03:35.228][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:35.230][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-13 16:03:35.232][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.233][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-13 16:03:35.234][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.236][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-13 16:03:35.237][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.238][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-13 16:03:35.239][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-13 16:03:35.241][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-13 16:03:35.242][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-13 16:03:35.243][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-13 16:03:35.244][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-13 16:03:35.246][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-13 16:03:35.247][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-13 16:03:35.248][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:35.250][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.251][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:35.252][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-13 16:03:35.253][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:03:35.254][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:03:35.256][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-13 16:03:35.257][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:03:35.258][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:03:35.259][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-13 16:03:35.260][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:35.262][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-13 16:03:35.263][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-13 16:03:35.264][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-13 16:03:35.265][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:35.267][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-13 16:03:35.269][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.270][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-13 16:03:35.271][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.273][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-13 16:03:35.274][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.275][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-13 16:03:35.276][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-13 16:03:35.278][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-13 16:03:35.279][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-13 16:03:35.280][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-13 16:03:35.282][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-13 16:03:35.283][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-13 16:03:35.284][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-13 16:03:35.285][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:35.287][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.288][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:35.289][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-13 16:03:35.290][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:03:35.291][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:03:35.293][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-13 16:03:35.294][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:03:35.295][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:03:35.296][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-13 16:03:35.297][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:35.299][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-13 16:03:35.300][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-13 16:03:35.301][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-13 16:03:35.302][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:35.306][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-13 16:03:35.307][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.309][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.310][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.311][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:35.312][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:35.313][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.314][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.315][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.316][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:35.318][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:35.319][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.320][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.321][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.322][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:35.323][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:35.324][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.325][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.327][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.328][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:35.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:35.330][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.332][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.333][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:35.334][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:35.336][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.338][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.339][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:35.340][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:35.341][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.342][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.344][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.345][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:35.346][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:35.347][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.348][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.349][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.350][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:35.351][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:35.353][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.354][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.355][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.356][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:35.357][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:35.359][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.366][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.367][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:35.368][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:35.369][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.370][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.371][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.372][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:35.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:35.374][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.376][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.377][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.378][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:35.379][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:35.380][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.381][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.382][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.383][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:35.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:35.386][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.388][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.389][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:35.390][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:35.391][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.393][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.394][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:35.395][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:35.396][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.398][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.399][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.400][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:35.401][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:35.402][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.403][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.404][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.405][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:35.406][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:35.407][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.409][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.410][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-13 16:03:35.415][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-13 16:03:35.416][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-13 16:03:35.418][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-13 16:03:35.420][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-13 16:03:35.422][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-13 16:03:35.423][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-13 16:03:35.425][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-13 16:03:35.427][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-13 16:03:35.428][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-13 16:03:35.430][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-13 16:03:35.432][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-13 16:03:35.434][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-13 16:03:35.435][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-13 16:03:35.437][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-13 16:03:35.439][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-13 16:03:35.440][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-13 16:03:35.442][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-13 16:03:35.444][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-13 16:03:35.446][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-13 16:03:35.447][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-13 16:03:35.449][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-13 16:03:35.451][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-13 16:03:35.453][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-13 16:03:35.455][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-13 16:03:35.456][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-13 16:03:35.458][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-13 16:03:35.460][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-13 16:03:35.462][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-13 16:03:35.463][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-13 16:03:35.465][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-13 16:03:35.467][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-13 16:03:35.469][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-13 16:03:35.470][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-13 16:03:35.472][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-13 16:03:35.474][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-13 16:03:35.475][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-13 16:03:35.477][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-13 16:03:35.479][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-13 16:03:35.481][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-13 16:03:35.482][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-13 16:03:35.484][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-13 16:03:35.486][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-13 16:03:35.488][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-13 16:03:35.489][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-13 16:03:35.491][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-13 16:03:35.493][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-13 16:03:35.495][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-13 16:03:35.497][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-13 16:03:35.499][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-13 16:03:35.501][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-13 16:03:35.502][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-13 16:03:35.504][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-13 16:03:35.506][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-13 16:03:35.507][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-13 16:03:35.509][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-13 16:03:35.511][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-13 16:03:35.513][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-13 16:03:35.514][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-13 16:03:35.516][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-13 16:03:35.518][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-13 16:03:35.519][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-13 16:03:35.521][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-13 16:03:35.523][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-13 16:03:35.525][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-13 16:03:35.526][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-13 16:03:35.528][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-13 16:03:35.530][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-13 16:03:35.532][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-13 16:03:35.533][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-13 16:03:35.535][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-13 16:03:35.537][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-13 16:03:35.539][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-13 16:03:35.540][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-13 16:03:35.542][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-13 16:03:35.544][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-13 16:03:35.546][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-13 16:03:35.547][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-13 16:03:35.549][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-13 16:03:35.551][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-13 16:03:35.552][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-13 16:03:35.554][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-13 16:03:35.556][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-13 16:03:35.563][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-13 16:03:35.565][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-07-13 16:03:35.569][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-13 16:03:35.570][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:35.571][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:35.572][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.573][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.580][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.581][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:35.582][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:35.583][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:35.584][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:35.590][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.591][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.592][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.593][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:35.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:35.595][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:35.597][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:35.598][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.599][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.600][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.601][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:35.602][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:35.603][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:35.604][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:35.605][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.606][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.608][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.609][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:35.610][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:35.611][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:35.612][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:35.613][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.614][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.615][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:35.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:35.618][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:35.619][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:35.621][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.622][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.623][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.624][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:35.625][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:35.626][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:35.627][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:35.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.631][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.632][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:35.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:35.634][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:35.635][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:35.636][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.637][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.638][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.639][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:35.640][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:35.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:35.643][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:35.644][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.646][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.647][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:35.648][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:35.649][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:35.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:35.651][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.652][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.654][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.655][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:35.656][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:35.657][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:35.658][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:35.659][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.660][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.661][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.662][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:35.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:35.664][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:35.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:35.667][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.668][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.669][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.670][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:35.671][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:35.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:35.673][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:35.674][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.675][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.676][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.678][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:35.679][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:35.680][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:35.681][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:35.682][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.683][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.684][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:35.686][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:35.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:35.688][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:35.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.691][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.692][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.693][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:35.694][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:35.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:35.696][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:35.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.698][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.699][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.700][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:35.702][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:35.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:35.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:35.705][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.706][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.707][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:35.708][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:35.709][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:35.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:35.711][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:35.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:35.714][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:35.716][bdb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-07-13 16:03:35.730][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-07-13 16:03:35.732][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.733][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-07-13 16:03:35.735][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.736][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-13 16:03:35.737][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.738][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-13 16:03:35.739][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.741][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-13 16:03:35.742][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-07-13 16:03:35.743][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-13 16:03:35.744][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.746][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-07-13 16:03:35.747][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-13 16:03:35.748][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-07-13 16:03:35.748][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-07-13 16:03:35.749][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-13 16:03:35.751][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:35.752][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-13 16:03:35.753][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:03:35.754][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:03:35.755][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-13 16:03:35.757][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:03:35.758][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:03:35.759][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-13 16:03:35.760][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-07-13 16:03:35.760][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-07-13 16:03:35.761][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-13 16:03:35.763][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-13 16:03:35.764][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.765][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:35.767][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-07-13 16:03:35.769][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.770][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-07-13 16:03:35.771][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.773][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-13 16:03:35.774][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.775][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-13 16:03:35.776][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.778][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-13 16:03:35.779][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-13 16:03:35.780][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-13 16:03:35.781][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.783][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-07-13 16:03:35.784][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-13 16:03:35.785][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-07-13 16:03:35.785][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-07-13 16:03:35.785][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-07-13 16:03:35.785][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-07-13 16:03:35.785][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-07-13 16:03:35.785][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-07-13 16:03:35.787][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-13 16:03:35.788][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-13 16:03:35.789][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-13 16:03:35.790][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:03:35.792][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:03:35.793][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-13 16:03:35.794][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:03:35.795][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:03:35.796][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-13 16:03:35.798][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-07-13 16:03:35.798][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-07-13 16:03:35.799][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-13 16:03:35.800][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-13 16:03:35.801][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.802][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:35.804][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-07-13 16:03:35.806][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-13 16:03:35.830][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-07-13 16:03:35.831][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.832][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-13 16:03:35.834][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.835][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-13 16:03:35.836][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.837][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-13 16:03:35.838][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-13 16:03:35.840][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-13 16:03:35.841][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.842][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-07-13 16:03:35.843][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-13 16:03:35.845][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-07-13 16:03:35.845][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:03:35.845][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:03:35.845][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:03:35.845][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:03:35.845][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:03:35.845][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:03:35.845][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:03:35.845][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:03:35.845][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:03:35.845][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-07-13 16:03:35.845][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:03:35.845][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:03:35.845][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:03:35.846][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-13 16:03:35.847][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-13 16:03:35.847][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-13 16:03:35.847][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-13 16:03:35.849][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-07-13 16:03:35.850][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:03:35.851][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:03:35.852][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-13 16:03:35.853][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:03:35.855][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:03:35.856][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-13 16:03:35.857][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-07-13 16:03:35.857][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-07-13 16:03:35.857][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-07-13 16:03:35.858][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-13 16:03:35.859][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-13 16:03:35.860][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.862][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-07-13 16:03:35.863][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-07-13 16:03:35.866][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.867][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-07-13 16:03:35.868][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.869][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-13 16:03:35.871][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.872][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-13 16:03:35.873][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.874][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-13 16:03:35.876][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-13 16:03:35.877][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-13 16:03:35.878][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.879][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-07-13 16:03:35.881][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-13 16:03:35.882][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-07-13 16:03:35.882][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-07-13 16:03:35.883][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-13 16:03:35.884][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:35.886][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-07-13 16:03:35.887][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:03:35.888][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:03:35.889][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-13 16:03:35.890][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:03:35.891][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:03:35.893][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-13 16:03:35.894][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-07-13 16:03:35.894][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-07-13 16:03:35.894][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-07-13 16:03:35.895][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-13 16:03:35.896][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-13 16:03:35.897][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:35.899][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-07-13 16:03:35.907][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-07-13 16:03:35.908][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-13 16:03:35.910][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-13 16:03:35.912][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-07-13 16:03:35.914][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-13 16:03:35.916][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-07-13 16:03:35.938][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2024-07-13 16:03:35.940][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2024-07-13 16:03:35.944][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2024-07-13 16:03:35.949][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2024-07-13 16:03:35.953][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-13 16:03:35.954][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-13 16:03:35.956][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.ccds".
biodb.DEBUG[2024-07-13 16:03:35.958][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-13 16:03:35.959][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-13 16:03:35.960][bdb$getFactory()$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.INFO [2024-07-13 16:03:35.971][biodb::testThat]
biodb.INFO [2024-07-13 16:03:35.973][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-07-13 16:03:35.974][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:03:35.975][biodb::testThat]
biodb.TRACE[2024-07-13 16:03:35.980][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS12227.1-content.html".
biodb.DEBUG[2024-07-13 16:03:35.982][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-07-13 16:03:35.986][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-07-13 16:03:35.995][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:03:35.996][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:35.997][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:36.014][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:36.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:36.016][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:36.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:03:36.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.062][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:36.080][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:36.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.082][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.129][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:36.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:36.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:36.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:36.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.140][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:36.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:36.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.145][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.150][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:36.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:36.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.155][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.160][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.227][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:03:36.232][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS12227.1.
biodb.TRACE[2024-07-13 16:03:36.235][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:36.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:36.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.240][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:36.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:36.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.281][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:03:36.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:03:36.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.286][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:03:36.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:03:36.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.291][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-13 16:03:36.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-13 16:03:36.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.296][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-13 16:03:36.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-13 16:03:36.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.339][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:36.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:36.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.350][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.355][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.382][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:36.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:36.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.387][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:36.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:36.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.392][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:36.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:36.395][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.411][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.416][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.421][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.423][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.425][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.442][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:36.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:36.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.447][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:36.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:36.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.452][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:36.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:36.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.462][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:36.463][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:36.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.465][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.467][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:36.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:36.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.481][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:36.483][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:36.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.485][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.491][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.493][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.495][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.518][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.ccds-CCDS43240.1-content.html".
biodb.DEBUG[2024-07-13 16:03:36.568][biodb$getFactory()$createEntryFromCo ...] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-07-13 16:03:36.570][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-07-13 16:03:36.572][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:03:36.573][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:36.574][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:36.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:36.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:36.583][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:36.584][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:03:36.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.630][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:36.631][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:36.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.634][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.635][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:36.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:36.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.645][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:36.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:36.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:36.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:36.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.661][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:36.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:36.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.666][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.671][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.676][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.681][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.686][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.691][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:03:36.696][biodb$getFactory()$createEntryFromCo ...] Accession numbers: CCDS43240.1.
biodb.TRACE[2024-07-13 16:03:36.725][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:36.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:36.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.730][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:36.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:36.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.735][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:03:36.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:03:36.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.740][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:03:36.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:03:36.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.745][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-13 16:03:36.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-13 16:03:36.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.750][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-13 16:03:36.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-13 16:03:36.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.765][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:36.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:36.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.776][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.781][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.786][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.808][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:36.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:36.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.813][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:36.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:36.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.818][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:36.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:36.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.854][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.859][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.864][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.865][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.867][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.868][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.883][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:36.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:36.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.888][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:36.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:36.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.893][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:36.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:36.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.898][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:36.899][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:36.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.902][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.903][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:36.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:36.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.918][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:36.919][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:36.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.922][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:36.928][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:36.930][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:36.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:36.932][ef$get] fields variable is a list.
biodb.INFO [2024-07-13 16:03:36.942][biodb::testThat]
biodb.INFO [2024-07-13 16:03:36.944][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-07-13 16:03:36.945][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:03:36.946][biodb::testThat]
biodb.DEBUG[2024-07-13 16:03:36.949][private$loadEntries] Creating entries from ids [2]: "CCDS12227.1, CCDS43240.1".
biodb.DEBUG[2024-07-13 16:03:36.957][conn$getEntryContent] Get NCBI CCDS entry content(s) for 2 id(s)...
biodb.TRACE[2024-07-13 16:03:36.962][cch$loadFileContent] Trying to load 2 files from cache: [2]: "CCDS12227.1, CCDS43240.1".
biodb.TRACE[2024-07-13 16:03:36.965][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2024-07-13 16:03:36.968][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS12227.1.html, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2024-07-13 16:03:36.969][conn$getEntryContent] 2 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-07-13 16:03:36.971][self$createEntryFromContent] Creating NCBI CCDS entries from 2 content(s).
biodb.DEBUG[2024-07-13 16:03:36.973][self$createEntryFromContent] Parsing 2 NCBI CCDS entries.
biodb.DEBUG[2024-07-13 16:03:36.975][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:03:36.976][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:36.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:36.983][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:36.984][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:36.985][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:36.986][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:03:37.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:37.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:37.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.019][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:37.020][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:37.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.022][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.024][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:37.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:37.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.035][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:37.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:37.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.039][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:37.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:37.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.044][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:37.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:37.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.049][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:37.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:37.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:37.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:37.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:37.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:37.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:37.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:37.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:03:37.069][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:03:37.070][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:37.071][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:37.077][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:37.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:37.079][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:37.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:03:37.096][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:37.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:37.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.101][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:37.102][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:37.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.104][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.106][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:37.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:37.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.111][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:37.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:37.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.116][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:37.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:37.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:37.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:37.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.126][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:37.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:37.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.131][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:37.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:37.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.136][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:37.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:37.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.141][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:37.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:37.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:37.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:37.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:37.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:37.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.156][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:37.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:37.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.161][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:37.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:37.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.166][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:37.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:37.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:37.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:37.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:03:37.175][self$createEntryFromContent] Accession numbers: CCDS12227.1, CCDS43240.1.
biodb.TRACE[2024-07-13 16:03:37.177][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-07-13 16:03:37.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-07-13 16:03:37.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.182][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-07-13 16:03:37.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-07-13 16:03:37.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.187][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-07-13 16:03:37.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-07-13 16:03:37.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.197][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-07-13 16:03:37.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-07-13 16:03:37.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.202][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-07-13 16:03:37.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-07-13 16:03:37.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.207][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-07-13 16:03:37.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-07-13 16:03:37.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-13 16:03:37.226][biodb::testThat]
biodb.INFO [2024-07-13 16:03:37.227][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-07-13 16:03:37.228][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:03:37.229][biodb::testThat]
biodb.INFO [2024-07-13 16:03:37.237][biodb::testThat]
biodb.INFO [2024-07-13 16:03:37.238][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-07-13 16:03:37.239][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:03:37.240][biodb::testThat]
biodb.WARN [2024-07-13 16:03:37.266][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2024-07-13 16:03:37.293][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2024-07-13 16:03:37.305][biodb::testThat]
biodb.INFO [2024-07-13 16:03:37.306][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-07-13 16:03:37.307][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:03:37.308][biodb::testThat]
biodb.TRACE[2024-07-13 16:03:37.340][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:37.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:37.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.345][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:37.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:37.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.350][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:03:37.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:03:37.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.355][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:03:37.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:03:37.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.359][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-13 16:03:37.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-13 16:03:37.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.364][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-13 16:03:37.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-13 16:03:37.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.381][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:37.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:37.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.387][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:37.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:37.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.396][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:03:37.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:03:37.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.401][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:03:37.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:03:37.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.406][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-13 16:03:37.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-13 16:03:37.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:37.411][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-13 16:03:37.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-13 16:03:37.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:37.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-13 16:03:37.422][biodb::testThat]
biodb.INFO [2024-07-13 16:03:37.423][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-07-13 16:03:37.425][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:03:37.426][biodb::testThat]
biodb.INFO [2024-07-13 16:03:37.437][biodb::testThat]
biodb.INFO [2024-07-13 16:03:37.438][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-07-13 16:03:37.439][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:03:37.440][biodb::testThat]
biodb.INFO [2024-07-13 16:03:37.450][biodb::testThat]
biodb.INFO [2024-07-13 16:03:37.451][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2024-07-13 16:03:37.452][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:03:37.454][biodb::testThat]
biodb.DEBUG[2024-07-13 16:03:37.458][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1".
biodb.DEBUG[2024-07-13 16:03:38.949][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS12227.1.
biodb.INFO [2024-07-13 16:03:40.353][biodb::testThat]
biodb.INFO [2024-07-13 16:03:40.354][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2024-07-13 16:03:40.355][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:03:40.356][biodb::testThat]
biodb.INFO [2024-07-13 16:03:40.364][bdb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-13 16:03:40.366][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2024-07-13 16:03:40.367][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2024-07-13 16:03:40.368][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-13 16:03:40.369][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:40.370][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:40.372][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:40.373][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:40.374][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.375][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-13 16:03:40.388][biodb::testContext]
biodb.INFO [2024-07-13 16:03:40.389][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-13 16:03:40.390][biodb::testContext] Test context - Gene long tests
biodb.INFO [2024-07-13 16:03:40.391][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-13 16:03:40.393][biodb::testContext]
biodb.INFO [2024-07-13 16:03:40.395][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-07-13 16:03:40.397][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-13 16:03:40.401][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-13 16:03:40.403][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-13 16:03:40.404][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-13 16:03:40.405][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.406][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.407][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.408][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-13 16:03:40.410][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-13 16:03:40.411][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.412][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.413][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.414][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-13 16:03:40.416][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-13 16:03:40.417][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.418][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.419][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.420][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-13 16:03:40.421][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-13 16:03:40.423][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-13 16:03:40.424][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.425][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.426][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.427][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-13 16:03:40.428][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-13 16:03:40.430][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-13 16:03:40.431][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.432][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.433][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.434][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-13 16:03:40.436][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-13 16:03:40.437][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.438][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.439][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.440][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-13 16:03:40.441][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-13 16:03:40.443][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-13 16:03:40.444][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.446][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.447][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-13 16:03:40.448][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-13 16:03:40.450][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.461][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-13 16:03:40.462][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-13 16:03:40.463][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-13 16:03:40.464][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.465][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.468][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-13 16:03:40.469][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-13 16:03:40.470][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-13 16:03:40.471][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-13 16:03:40.473][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-13 16:03:40.474][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-13 16:03:40.475][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.476][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.477][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.478][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-13 16:03:40.480][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-13 16:03:40.481][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.482][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.483][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.484][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-13 16:03:40.485][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-13 16:03:40.486][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.488][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.489][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.490][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-13 16:03:40.491][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-13 16:03:40.492][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.493][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.494][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.496][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-13 16:03:40.497][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-13 16:03:40.498][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.499][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.502][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-13 16:03:40.503][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-13 16:03:40.504][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.505][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.506][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.507][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-13 16:03:40.509][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-13 16:03:40.519][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-13 16:03:40.520][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.521][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.522][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.523][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-13 16:03:40.525][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-13 16:03:40.526][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-13 16:03:40.527][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.531][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-13 16:03:40.533][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-13 16:03:40.534][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-13 16:03:40.536][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:40.537][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-13 16:03:40.538][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:40.539][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-13 16:03:40.541][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-13 16:03:40.542][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-13 16:03:40.543][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-13 16:03:40.544][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-13 16:03:40.546][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:40.547][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-13 16:03:40.548][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-13 16:03:40.549][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:40.550][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:40.552][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-13 16:03:40.552][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-13 16:03:40.552][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-13 16:03:40.552][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-13 16:03:40.552][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-13 16:03:40.553][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-13 16:03:40.554][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:03:40.555][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:03:40.557][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-13 16:03:40.558][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:03:40.559][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:03:40.560][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-13 16:03:40.561][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:40.563][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-13 16:03:40.564][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-13 16:03:40.565][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-13 16:03:40.566][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:40.568][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-13 16:03:40.570][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-13 16:03:40.571][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-13 16:03:40.572][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:40.574][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-13 16:03:40.575][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:40.576][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-13 16:03:40.577][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-13 16:03:40.579][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-13 16:03:40.580][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-13 16:03:40.581][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-13 16:03:40.582][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:40.583][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-13 16:03:40.585][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-13 16:03:40.586][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:40.587][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:40.588][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-13 16:03:40.588][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-13 16:03:40.588][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-13 16:03:40.588][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-13 16:03:40.588][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-13 16:03:40.590][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-13 16:03:40.591][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:03:40.592][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:03:40.593][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-13 16:03:40.594][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:03:40.595][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:03:40.597][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-13 16:03:40.598][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:40.599][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-13 16:03:40.600][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-13 16:03:40.601][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-13 16:03:40.607][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:40.608][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-13 16:03:40.610][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:40.611][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-13 16:03:40.613][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:40.614][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-13 16:03:40.615][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:40.616][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-13 16:03:40.618][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-13 16:03:40.619][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-13 16:03:40.620][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-13 16:03:40.621][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-13 16:03:40.622][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-13 16:03:40.624][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-13 16:03:40.625][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-13 16:03:40.626][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:40.627][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:40.628][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:40.630][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-13 16:03:40.631][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:03:40.632][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:03:40.633][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-13 16:03:40.634][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:03:40.635][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:03:40.636][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-13 16:03:40.638][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:40.639][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-13 16:03:40.640][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-13 16:03:40.641][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-13 16:03:40.642][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:40.644][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-13 16:03:40.646][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:40.647][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-13 16:03:40.648][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:40.650][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-13 16:03:40.651][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:40.652][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-13 16:03:40.653][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-13 16:03:40.655][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-13 16:03:40.656][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-13 16:03:40.657][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-13 16:03:40.658][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-13 16:03:40.660][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-13 16:03:40.661][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-13 16:03:40.662][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:40.663][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:40.664][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:40.666][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-13 16:03:40.667][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:03:40.668][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:03:40.669][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-13 16:03:40.670][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:03:40.671][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:03:40.673][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-13 16:03:40.674][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:40.675][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-13 16:03:40.676][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-13 16:03:40.677][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-13 16:03:40.679][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:40.680][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-13 16:03:40.681][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.682][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.684][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.685][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:40.686][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:40.687][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.688][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.689][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.690][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:40.691][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:40.692][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.693][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.695][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.696][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:40.697][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:40.698][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.699][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.700][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.701][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:40.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:40.703][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.704][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.705][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:40.708][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:40.709][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.710][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.711][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:40.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:40.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.716][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.717][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:40.718][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:40.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.721][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.722][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.723][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:40.724][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:40.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.726][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.727][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:40.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:40.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.732][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.733][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.734][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:40.735][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:40.736][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.737][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.742][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.744][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:40.745][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:40.746][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.747][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.748][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:40.750][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:40.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.752][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.753][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.754][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:40.756][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:40.757][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.759][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.760][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:40.761][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:40.762][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.763][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.764][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.765][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:40.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:40.767][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.770][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.771][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:40.772][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:40.773][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.774][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.775][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:40.777][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:40.778][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.779][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.781][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-13 16:03:40.782][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-13 16:03:40.784][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-13 16:03:40.786][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-13 16:03:40.788][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-13 16:03:40.789][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-13 16:03:40.791][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-13 16:03:40.793][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-13 16:03:40.794][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-13 16:03:40.796][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-13 16:03:40.798][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-13 16:03:40.799][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-13 16:03:40.801][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-13 16:03:40.803][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-13 16:03:40.804][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-13 16:03:40.806][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-13 16:03:40.808][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-13 16:03:40.810][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-13 16:03:40.811][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-13 16:03:40.813][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-13 16:03:40.815][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-13 16:03:40.816][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-13 16:03:40.818][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-13 16:03:40.820][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-13 16:03:40.822][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-13 16:03:40.824][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-13 16:03:40.826][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-13 16:03:40.827][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-13 16:03:40.829][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-13 16:03:40.831][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-13 16:03:40.833][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-13 16:03:40.835][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-13 16:03:40.836][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-13 16:03:40.838][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-13 16:03:40.840][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-13 16:03:40.842][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-13 16:03:40.843][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-13 16:03:40.845][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-13 16:03:40.847][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-13 16:03:40.848][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-13 16:03:40.850][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-13 16:03:40.852][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-13 16:03:40.854][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-13 16:03:40.855][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-13 16:03:40.857][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-13 16:03:40.859][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-13 16:03:40.861][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-13 16:03:40.863][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-13 16:03:40.864][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-13 16:03:40.866][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-13 16:03:40.868][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-13 16:03:40.869][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-13 16:03:40.871][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-13 16:03:40.873][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-13 16:03:40.879][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-13 16:03:40.881][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-13 16:03:40.882][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-13 16:03:40.884][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-13 16:03:40.886][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-13 16:03:40.888][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-13 16:03:40.889][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-13 16:03:40.891][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-13 16:03:40.893][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-13 16:03:40.894][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-13 16:03:40.896][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-13 16:03:40.898][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-13 16:03:40.899][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-13 16:03:40.901][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-13 16:03:40.903][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-13 16:03:40.904][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-13 16:03:40.906][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-13 16:03:40.908][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-13 16:03:40.910][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-13 16:03:40.911][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-13 16:03:40.913][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-13 16:03:40.915][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-13 16:03:40.916][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-13 16:03:40.918][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-13 16:03:40.920][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-13 16:03:40.922][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-13 16:03:40.923][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-13 16:03:40.925][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-13 16:03:40.927][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-13 16:03:40.928][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-13 16:03:40.930][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-07-13 16:03:40.931][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-13 16:03:40.933][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:40.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:40.935][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.937][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.938][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:40.939][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:40.940][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:40.941][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:40.942][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.944][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.945][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.946][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:40.947][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:40.948][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:40.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:40.950][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.952][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.953][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:40.954][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:40.956][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:40.957][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:40.958][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.959][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.960][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.961][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:40.962][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:40.963][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:40.964][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:40.965][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.967][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.968][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.969][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:40.970][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:40.971][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:40.972][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:40.973][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.974][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.975][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.976][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:40.977][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:40.979][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:40.980][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:40.981][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.982][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.983][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.984][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:40.985][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:40.986][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:40.987][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:40.988][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.989][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.991][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.992][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:40.993][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:40.994][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:40.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:40.996][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:40.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:40.998][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:40.999][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:41.000][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:41.001][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:41.002][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:41.004][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:41.005][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:41.006][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:41.007][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:41.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:41.013][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:41.015][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:41.016][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:41.017][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:41.018][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:41.019][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:41.020][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:41.021][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:41.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:41.023][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:41.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:41.025][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:41.026][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:41.027][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:41.029][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:41.030][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:41.031][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:41.032][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:41.033][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:41.034][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:41.035][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:41.036][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:41.037][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:41.038][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:41.039][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:41.041][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:41.042][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:41.043][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:41.044][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:41.045][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:41.046][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:41.047][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:41.048][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:41.049][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:41.050][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:41.051][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:41.053][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:41.054][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:41.055][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:41.056][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:41.057][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:41.058][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:41.059][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:41.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:41.062][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:41.063][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:41.064][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:03:41.065][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:41.066][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:41.067][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:41.068][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:41.069][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:41.070][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:41.073][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-07-13 16:03:41.075][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-07-13 16:03:41.077][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:41.079][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-07-13 16:03:41.080][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:41.081][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-13 16:03:41.082][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:41.084][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-13 16:03:41.085][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:41.086][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-13 16:03:41.087][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-07-13 16:03:41.089][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-13 16:03:41.090][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:41.091][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-07-13 16:03:41.092][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-13 16:03:41.094][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-07-13 16:03:41.094][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-07-13 16:03:41.095][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-13 16:03:41.096][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:41.098][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-13 16:03:41.099][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:03:41.100][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:03:41.101][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-13 16:03:41.102][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:03:41.103][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:03:41.105][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-13 16:03:41.106][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-07-13 16:03:41.106][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-07-13 16:03:41.107][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-13 16:03:41.108][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-13 16:03:41.109][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:41.111][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:41.112][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-07-13 16:03:41.115][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:41.116][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-07-13 16:03:41.117][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:41.118][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-13 16:03:41.120][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:41.121][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-13 16:03:41.122][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:41.124][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-13 16:03:41.125][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-13 16:03:41.126][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-13 16:03:41.127][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:41.129][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-07-13 16:03:41.130][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-13 16:03:41.131][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-07-13 16:03:41.131][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-07-13 16:03:41.131][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-07-13 16:03:41.131][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-07-13 16:03:41.131][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-07-13 16:03:41.131][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-07-13 16:03:41.132][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-13 16:03:41.134][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-13 16:03:41.135][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-13 16:03:41.136][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:03:41.137][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:03:41.138][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-13 16:03:41.140][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:03:41.141][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:03:41.142][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-13 16:03:41.143][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-07-13 16:03:41.143][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-07-13 16:03:41.144][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-13 16:03:41.150][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-13 16:03:41.152][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:41.153][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:41.155][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-07-13 16:03:41.157][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-13 16:03:41.158][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-07-13 16:03:41.160][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:41.161][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-13 16:03:41.162][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:41.164][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-13 16:03:41.165][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:41.166][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-13 16:03:41.168][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-13 16:03:41.169][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-13 16:03:41.170][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:41.172][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-07-13 16:03:41.173][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-13 16:03:41.174][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-07-13 16:03:41.174][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:03:41.174][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:03:41.174][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:03:41.174][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:03:41.174][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:03:41.174][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:03:41.174][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:03:41.174][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:03:41.174][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:03:41.174][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-07-13 16:03:41.174][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:03:41.174][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:03:41.174][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:03:41.176][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-13 16:03:41.177][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-13 16:03:41.177][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-13 16:03:41.177][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-13 16:03:41.179][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-07-13 16:03:41.180][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:03:41.181][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:03:41.183][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-13 16:03:41.184][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:03:41.185][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:03:41.186][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-13 16:03:41.188][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-07-13 16:03:41.188][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-07-13 16:03:41.188][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-07-13 16:03:41.189][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-13 16:03:41.190][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-13 16:03:41.192][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:41.193][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-07-13 16:03:41.195][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-07-13 16:03:41.197][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:41.199][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-07-13 16:03:41.200][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:41.201][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-13 16:03:41.203][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:41.204][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-13 16:03:41.205][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:41.206][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-13 16:03:41.208][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-13 16:03:41.209][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-13 16:03:41.210][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:41.211][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-07-13 16:03:41.213][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-13 16:03:41.214][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-07-13 16:03:41.214][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-07-13 16:03:41.215][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-13 16:03:41.216][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:03:41.218][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-07-13 16:03:41.219][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:03:41.220][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:03:41.221][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-13 16:03:41.222][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:03:41.223][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:03:41.225][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-13 16:03:41.226][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-07-13 16:03:41.226][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-07-13 16:03:41.226][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-07-13 16:03:41.227][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-13 16:03:41.228][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-13 16:03:41.229][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-13 16:03:41.231][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-07-13 16:03:41.232][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-07-13 16:03:41.234][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-13 16:03:41.236][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-13 16:03:41.238][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-07-13 16:03:41.240][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-13 16:03:41.242][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-07-13 16:03:41.251][super$initialize] Initialize connector ncbi.gene.
biodb.DEBUG[2024-07-13 16:03:41.252][super$initialize] Register connector ncbi.gene with the request scheduler
biodb.DEBUG[2024-07-13 16:03:41.254][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.gene.
biodb.DEBUG[2024-07-13 16:03:41.256][private$addConnectorRules] Create new rule for URL "www.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2024-07-13 16:03:41.257][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-13 16:03:41.258][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-13 16:03:41.260][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.gene".
biodb.DEBUG[2024-07-13 16:03:41.262][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-13 16:03:41.263][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-13 16:03:41.352][biodb$getFactory()$createConn] Creating new connector ncbi.gene for database class ncbi.gene .
biodb.INFO [2024-07-13 16:03:41.358][biodb::testThat]
biodb.INFO [2024-07-13 16:03:41.359][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-07-13 16:03:41.360][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:03:41.361][biodb::testThat]
biodb.TRACE[2024-07-13 16:03:41.367][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-2833-content.xml".
biodb.DEBUG[2024-07-13 16:03:41.369][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-07-13 16:03:41.372][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-07-13 16:03:41.375][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:03:41.376][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:41.377][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:41.383][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:41.384][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:41.385][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:41.387][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:03:41.401][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:41.403][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:41.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.405][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:41.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:41.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.412][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:41.413][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:41.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.416][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.418][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:41.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:41.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.423][ef$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:03:41.424][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:41.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.427][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.428][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:03:41.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:41.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.440][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:03:41.441][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:41.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.444][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.446][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:03:41.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:41.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.451][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:03:41.453][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:41.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.455][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.457][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:03:41.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:41.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.463][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:41.464][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:41.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.466][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.469][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:41.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:41.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.479][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:41.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:41.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.484][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:41.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:41.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.489][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:41.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:41.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.494][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:41.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:41.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:41.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:41.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:41.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:41.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:41.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:41.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:41.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:41.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:41.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:41.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:41.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:41.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:41.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:41.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:03:41.533][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2833.
biodb.TRACE[2024-07-13 16:03:41.536][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:41.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:41.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.541][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:41.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:41.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:41.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:41.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.551][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:41.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:41.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.556][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:41.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:41.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:03:41.561][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-07-13 16:03:41.605][initialize] Initialize connector ncbi.ccds.
biodb.DEBUG[2024-07-13 16:03:41.606][initialize] Register connector ncbi.ccds with the request scheduler
biodb.DEBUG[2024-07-13 16:03:41.608][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.ccds.
biodb.DEBUG[2024-07-13 16:03:41.630][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-07-13 16:03:41.632][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-13 16:03:41.633][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-07-13 16:03:41.651][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-13 16:03:41.652][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-13 16:03:41.654][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-07-13 16:03:41.655][self$recomputeFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-13 16:03:41.656][self$recomputeFrequency] t.conn=1.000000, n.conn=3.000000
biodb.DEBUG[2024-07-13 16:03:41.658][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-13 16:03:41.659][self$setFrequency] t=1.000000, n=3.000000
biodb.DEBUG[2024-07-13 16:03:41.683][self$createConn] Creating new connector ncbi.ccds for database class ncbi.ccds .
biodb.DEBUG[2024-07-13 16:03:41.684][private$loadEntries] Creating entries from ids [1]: "CCDS14416.1".
biodb.DEBUG[2024-07-13 16:03:41.686][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-13 16:03:41.689][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14416.1".
biodb.TRACE[2024-07-13 16:03:41.690][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:03:41.693][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14416.1.html".
biodb.DEBUG[2024-07-13 16:03:41.694][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-07-13 16:03:41.696][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-07-13 16:03:41.697][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-07-13 16:03:41.699][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:03:41.700][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:41.701][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:41.708][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:41.709][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:41.710][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:41.711][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:03:41.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:41.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:41.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.736][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:41.737][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:41.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.740][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.742][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:41.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:41.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.747][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:41.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:41.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.752][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:41.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:41.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:41.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:41.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.762][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:41.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:41.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:41.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:41.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:41.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:41.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:41.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:41.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:41.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:41.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:41.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:41.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.792][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:41.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:41.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:03:41.797][self$createEntryFromContent] Accession numbers: CCDS14416.1.
biodb.TRACE[2024-07-13 16:03:41.798][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:41.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:41.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.803][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:41.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:41.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.814][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:41.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:41.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.820][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:03:41.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:03:41.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.824][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:03:41.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:03:41.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.829][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-13 16:03:41.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-13 16:03:41.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.834][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-13 16:03:41.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-13 16:03:41.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.840][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:41.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:41.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.850][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:41.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:41.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:41.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:41.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.865][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:41.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:41.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.870][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:41.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:41.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.877][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:41.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:41.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.882][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:41.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:41.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:41.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:41.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.892][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:41.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:41.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.897][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:41.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:41.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.902][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:41.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:41.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.914][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:41.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:41.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:41.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:41.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.924][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:41.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:41.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.929][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:41.930][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:41.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.970][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.971][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:41.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:41.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.986][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:03:41.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:41.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.991][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:41.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:41.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:41.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:41.996][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:41.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:41.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.001][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:03:42.002][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:42.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.005][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.006][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:03:42.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:42.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.022][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:03:42.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:42.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.027][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:42.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:42.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.031][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:42.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:42.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.036][ef$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:03:42.038][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:42.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.040][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.041][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:03:42.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:42.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.056][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:42.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:42.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.061][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:42.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:42.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.066][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:42.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:42.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.071][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:42.073][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:42.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.075][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.076][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:42.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:42.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.091][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:42.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:42.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.102][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:42.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:42.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.107][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:42.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:42.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.112][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:42.113][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:42.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.115][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.116][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:42.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:42.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.131][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:42.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:42.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.136][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:42.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:42.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.141][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:42.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:42.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.146][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:42.148][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:42.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.150][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.151][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:42.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:42.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.166][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:03:42.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:42.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.171][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:03:42.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:42.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.176][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:03:42.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:42.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.181][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:03:42.182][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:42.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.185][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.186][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:03:42.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:42.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.200][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:42.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:42.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.206][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:42.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:42.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.210][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:42.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:42.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.216][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:42.217][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:42.218][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.219][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.220][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:42.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:42.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.240][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:42.242][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:42.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.244][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.250][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:42.252][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:42.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.254][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.260][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:42.262][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:42.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.264][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.270][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:42.272][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:42.273][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.274][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.280][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:42.282][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:42.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.284][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.290][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:03:42.292][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:42.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.294][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.301][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:42.302][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:42.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.304][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.311][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:42.312][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:42.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.314][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.324][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3002-content.xml".
biodb.DEBUG[2024-07-13 16:03:42.325][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-07-13 16:03:42.327][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-07-13 16:03:42.329][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:03:42.330][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:42.331][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:42.337][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:42.339][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:42.340][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:42.341][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:03:42.354][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:42.356][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:42.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.358][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.360][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:42.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:42.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.365][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:42.367][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:42.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.369][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.371][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:42.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:42.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.382][ef$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:03:42.383][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:42.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.385][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.388][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:03:42.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:42.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.393][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:03:42.394][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:42.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.397][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.399][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:03:42.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:42.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.404][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:03:42.405][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:42.406][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.408][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.410][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:03:42.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:42.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.415][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:42.416][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:42.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.419][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.422][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:42.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:42.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.431][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:42.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:42.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.437][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:42.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:42.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.443][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:42.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:42.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:42.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:42.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:42.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:42.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:42.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:42.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:42.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:42.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:42.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:42.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:42.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:42.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:42.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:42.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:42.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:42.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:03:42.488][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3002.
biodb.TRACE[2024-07-13 16:03:42.491][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:42.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:42.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.496][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:42.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:42.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.501][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:42.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:42.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.506][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:42.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:42.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:42.516][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:42.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:42.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:42.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:03:42.520][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-07-13 16:03:42.522][private$loadEntries] Creating entries from ids [1]: "CCDS9633.1".
biodb.DEBUG[2024-07-13 16:03:42.587][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-13 16:03:42.610][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS9633.1".
biodb.TRACE[2024-07-13 16:03:42.611][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-13 16:03:42.613][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-13 16:03:42.614][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-07-13 16:03:42.616][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-07-13 16:03:42.617][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-13 16:03:42.618][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-07-13 16:03:42.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:03:42.630][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:42.631][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:42.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:42.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:42.640][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:42.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:42.643][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.DEBUG[2024-07-13 16:03:42.671][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-13 16:03:42.673][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-13 16:03:42.674][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1".
biodb.TRACE[2024-07-13 16:03:44.054][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS9633.1).
biodb.DEBUG[2024-07-13 16:03:45.410][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-07-13 16:03:45.412][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.content"
biodb.TRACE[2024-07-13 16:03:45.433][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/0813c5529d43ad5ef4f2c9b16d66e613.request"
biodb.TRACE[2024-07-13 16:03:45.436][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS9633.1.html"
biodb.DEBUG[2024-07-13 16:03:45.438][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-13 16:03:45.440][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-07-13 16:03:45.441][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-07-13 16:03:45.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:03:45.445][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:45.446][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:45.452][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:45.453][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:45.455][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:45.456][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:03:45.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:45.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:45.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.480][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:45.482][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:45.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.493][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.495][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:45.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:45.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.500][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:45.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:45.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.505][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:45.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:45.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:45.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:45.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.515][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:45.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:45.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.520][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:45.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:45.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.525][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:45.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:45.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.531][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:45.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:45.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.536][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:45.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:45.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:45.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:45.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.547][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:45.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:45.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:03:45.552][self$createEntryFromContent] Accession numbers: CCDS9633.1.
biodb.TRACE[2024-07-13 16:03:45.565][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:45.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:45.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.571][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:45.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:45.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.576][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:45.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:45.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.581][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:03:45.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:03:45.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.586][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:03:45.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:03:45.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.591][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-13 16:03:45.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-13 16:03:45.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.597][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-13 16:03:45.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-13 16:03:45.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.696][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:45.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:45.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:45.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:45.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.723][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:45.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:45.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.728][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:45.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:45.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:45.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:45.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:45.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:45.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:45.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:45.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:45.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:45.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.756][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:45.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:45.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.761][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:45.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:45.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.766][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:45.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:45.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:45.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:45.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:45.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:45.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:45.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:45.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.794][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:45.796][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:45.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.798][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:45.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:45.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.815][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:03:45.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:45.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.820][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:45.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:45.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.825][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:45.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:45.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.830][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:03:45.832][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:45.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.839][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.840][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:03:45.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:45.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.855][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:03:45.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:45.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.860][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:45.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:45.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.865][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:45.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:45.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.871][ef$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:03:45.872][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:45.873][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.874][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.876][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:03:45.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:45.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.891][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:45.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:45.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.897][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:45.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:45.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.902][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:45.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:45.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.907][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:45.909][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:45.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.911][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.912][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:45.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:45.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.928][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:45.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:45.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.933][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:45.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:45.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.938][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:45.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:45.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.943][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:45.944][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:45.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.946][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.948][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:45.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:45.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.967][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:45.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:45.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.972][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:45.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:45.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.977][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:45.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:45.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.982][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:45.983][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:45.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.986][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:45.987][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:45.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:45.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:45.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.001][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:03:46.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:46.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.006][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:03:46.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:46.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.011][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:03:46.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:46.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.016][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:03:46.018][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:46.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.020][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.021][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:03:46.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:46.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.036][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:46.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:46.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.041][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:46.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:46.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.046][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:46.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:46.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.051][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:46.052][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:46.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.054][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.056][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:46.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:46.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.071][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:46.072][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:46.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.074][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.085][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:46.087][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:46.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.089][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.095][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:46.097][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:46.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.099][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.105][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:46.106][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:46.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.109][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.115][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:46.117][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:46.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.119][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.125][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:03:46.127][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:46.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.129][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.135][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:46.137][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:46.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.139][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.145][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:46.147][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:46.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.149][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.161][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-3627-content.xml".
biodb.DEBUG[2024-07-13 16:03:46.162][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-07-13 16:03:46.164][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-07-13 16:03:46.166][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:03:46.167][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:46.168][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:46.174][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:46.175][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:46.176][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:46.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:03:46.200][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:46.202][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:46.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.204][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:46.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:46.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.211][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:46.213][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:46.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.215][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.217][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:46.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:46.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.222][ef$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:03:46.224][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:46.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.226][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.228][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:03:46.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:46.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.233][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:03:46.239][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:46.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.242][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.244][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:03:46.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:46.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.249][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:03:46.250][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:46.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.253][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.255][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:03:46.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:46.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.260][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:46.262][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:46.263][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.264][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.268][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:46.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:46.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.276][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:46.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:46.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:46.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:46.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.286][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:46.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:46.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.291][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:46.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:46.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.296][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:46.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:46.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.301][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:46.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:46.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.306][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:46.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:46.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.311][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:46.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:46.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.316][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:46.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:46.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.322][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:46.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:46.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.327][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:46.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:46.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:03:46.332][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3627.
biodb.TRACE[2024-07-13 16:03:46.335][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:46.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:46.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.340][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:46.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:46.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:46.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:46.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.350][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:46.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:46.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.355][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:46.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:46.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:03:46.360][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-07-13 16:03:46.361][private$loadEntries] Creating entries from ids [1]: "CCDS43240.1".
biodb.DEBUG[2024-07-13 16:03:46.367][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-13 16:03:46.369][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS43240.1".
biodb.TRACE[2024-07-13 16:03:46.370][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:03:46.372][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS43240.1.html".
biodb.DEBUG[2024-07-13 16:03:46.374][conn$getEntryContent] 1 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-07-13 16:03:46.375][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-07-13 16:03:46.376][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-07-13 16:03:46.378][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:03:46.380][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:46.381][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:46.387][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:46.388][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:46.389][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:46.390][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:03:46.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:46.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:46.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.411][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:46.413][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:46.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.415][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.417][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:46.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:46.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.422][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:46.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:46.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.427][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:46.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:46.430][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:46.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:46.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.438][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:46.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:46.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:46.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:46.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.448][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:46.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:46.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:46.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:46.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:46.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:46.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:46.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:46.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:46.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:46.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:03:46.474][self$createEntryFromContent] Accession numbers: CCDS43240.1.
biodb.TRACE[2024-07-13 16:03:46.476][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:46.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:46.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.481][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:46.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:46.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.486][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:46.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:46.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.496][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:03:46.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:03:46.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.503][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:03:46.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:03:46.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.508][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-13 16:03:46.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-13 16:03:46.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.513][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-13 16:03:46.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-13 16:03:46.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:46.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:46.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.553][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:46.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:46.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:46.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:46.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:46.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:46.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.574][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:46.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:46.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.581][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:46.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:46.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.587][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:46.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:46.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:46.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:46.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.597][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:46.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:46.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.602][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:46.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:46.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.608][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:46.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:46.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:46.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:46.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:46.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:46.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.631][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:46.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:46.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.637][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:46.638][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:46.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.641][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.642][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:46.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:46.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.663][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:03:46.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:46.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.669][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:46.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:46.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.674][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:46.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:46.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.679][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:03:46.681][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:46.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.683][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.684][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:03:46.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:46.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.699][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:03:46.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:46.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.704][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:46.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:46.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.709][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:46.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:46.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.714][ef$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:03:46.716][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:46.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.718][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.719][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:03:46.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:46.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.734][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:46.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:46.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.740][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:46.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:46.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.745][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:46.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:46.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.750][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:46.751][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:46.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.754][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.755][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:46.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:46.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.775][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:46.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:46.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.780][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:46.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:46.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.785][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:46.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:46.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.790][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:46.792][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:46.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.794][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:46.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:46.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.811][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:46.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:46.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.816][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:46.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:46.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.821][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:46.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:46.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.827][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:46.828][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:46.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.830][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.831][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:46.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:46.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.846][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:03:46.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:46.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.851][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:03:46.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:46.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.856][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:03:46.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:46.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.861][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:03:46.863][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:46.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.865][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.866][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:03:46.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:46.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.881][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:46.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:46.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.886][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:46.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:46.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.892][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:46.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:46.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.901][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:46.903][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:46.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.905][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.906][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:46.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:46.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.921][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:46.923][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:46.924][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.925][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.931][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:46.933][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:46.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.935][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.941][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:46.943][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:46.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.945][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.952][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:46.953][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:46.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.955][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.962][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:46.963][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:46.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.966][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.972][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:03:46.973][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:46.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.976][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.982][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:46.983][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:46.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.986][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:46.992][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:46.993][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:46.994][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:46.995][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:47.005][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-4316-content.xml".
biodb.DEBUG[2024-07-13 16:03:47.006][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-07-13 16:03:47.008][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-07-13 16:03:47.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:03:47.011][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:47.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:47.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:47.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:47.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:47.021][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:03:47.043][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:47.045][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:47.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:47.048][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:47.050][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:47.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:47.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:47.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:47.055][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:47.056][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:47.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:47.058][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:47.060][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:47.062][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:47.063][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:47.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:47.065][ef$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:03:47.067][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:47.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:47.069][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:47.071][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:03:47.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:47.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:47.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:47.076][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:03:47.078][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:47.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:47.080][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:47.082][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:03:47.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:47.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:47.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:47.087][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:03:47.089][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:47.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:47.091][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:47.093][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:03:47.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:47.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:47.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:47.098][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:47.100][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:47.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:47.102][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:47.105][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:47.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:47.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:47.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:47.113][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:47.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:47.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:47.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:47.118][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:47.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:47.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:47.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:47.123][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:47.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:47.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:47.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:47.128][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:47.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:47.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:47.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:47.133][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:47.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:47.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:47.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:47.138][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:47.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:47.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:47.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:47.143][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:47.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:47.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:47.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:47.148][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:47.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:47.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:47.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:47.153][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:47.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:47.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:47.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:47.158][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:47.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:47.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:47.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:47.163][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:47.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:47.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:47.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:03:47.173][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 4316.
biodb.TRACE[2024-07-13 16:03:47.176][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:47.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:47.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:47.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:47.181][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:47.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:47.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:47.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:47.187][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:47.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:47.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:47.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:47.192][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:47.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:47.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:47.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:47.197][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:47.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:47.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:47.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:03:47.202][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-07-13 16:03:47.204][private$loadEntries] Creating entries from ids [1]: "CCDS8317.1".
biodb.DEBUG[2024-07-13 16:03:47.205][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-13 16:03:47.207][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS8317.1".
biodb.TRACE[2024-07-13 16:03:47.208][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-13 16:03:47.210][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-13 16:03:47.211][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-07-13 16:03:47.213][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-07-13 16:03:47.214][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-13 16:03:47.215][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-07-13 16:03:47.234][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:03:47.236][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:47.237][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:47.243][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:47.244][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:47.246][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:47.247][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:47.276][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.DEBUG[2024-07-13 16:03:47.301][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-13 16:03:47.303][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-13 16:03:47.324][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1".
biodb.TRACE[2024-07-13 16:03:48.861][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS8317.1).
biodb.DEBUG[2024-07-13 16:03:50.263][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-07-13 16:03:50.266][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.content"
biodb.TRACE[2024-07-13 16:03:50.271][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f8b30fc64b45827df68e019c10a0c2f3.request"
biodb.TRACE[2024-07-13 16:03:50.274][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS8317.1.html"
biodb.DEBUG[2024-07-13 16:03:50.277][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-13 16:03:50.278][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-07-13 16:03:50.280][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-07-13 16:03:50.282][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:03:50.283][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:50.284][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:50.290][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:50.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:50.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:50.294][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:03:50.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:50.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:50.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.321][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:50.322][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:50.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.324][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.326][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:50.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:50.329][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.332][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:50.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:50.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.337][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:50.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:50.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:50.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:50.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.356][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:50.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:50.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.361][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:50.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:50.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.367][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:50.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:50.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.372][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:50.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:50.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.377][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:50.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:50.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.382][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:50.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:50.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.388][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:50.389][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:50.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:03:50.393][self$createEntryFromContent] Accession numbers: CCDS8317.1.
biodb.TRACE[2024-07-13 16:03:50.394][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:50.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:50.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.400][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:50.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:50.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.405][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:50.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:50.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.410][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:03:50.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:03:50.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.415][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:03:50.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:03:50.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.420][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-13 16:03:50.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-13 16:03:50.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.426][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-13 16:03:50.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-13 16:03:50.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.432][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:50.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:50.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.443][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:50.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:50.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.453][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:50.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:50.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:50.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:50.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:50.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:50.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:50.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:50.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.496][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:50.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:50.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.501][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:50.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:50.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.507][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:50.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:50.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.512][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:50.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:50.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.517][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:50.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:50.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.530][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:50.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:50.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.535][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:50.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:50.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.540][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:50.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:50.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.545][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:50.546][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:50.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.549][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:50.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:50.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.566][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:03:50.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:50.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.571][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:50.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:50.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.576][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:50.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:50.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.582][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:03:50.583][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:50.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.585][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.587][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:03:50.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:50.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.603][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:03:50.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:50.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.608][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:50.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:50.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.618][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:50.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:50.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.623][ef$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:03:50.625][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:50.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.627][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.628][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:03:50.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:50.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.643][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:50.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:50.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.648][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:50.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:50.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.653][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:50.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:50.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.658][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:50.659][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:50.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.662][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.663][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:50.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:50.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.678][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:50.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:50.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.683][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:50.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:50.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.688][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:50.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:50.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.692][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:50.694][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:50.695][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.696][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.697][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:50.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:50.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.712][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:50.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:50.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.717][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:50.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:50.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.722][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:50.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:50.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.727][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:50.728][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:50.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.730][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.732][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:50.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:50.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.752][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:03:50.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:50.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.757][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:03:50.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:50.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.762][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:03:50.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:50.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.767][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:03:50.769][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:50.770][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.771][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.772][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:03:50.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:50.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.787][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:50.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:50.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.792][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:50.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:50.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.797][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:50.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:50.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.802][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:50.804][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:50.805][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.806][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.807][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:50.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:50.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.822][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:50.824][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:50.825][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.826][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.832][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:50.834][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:50.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.836][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.842][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:50.844][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:50.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.846][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.853][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:50.854][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:50.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.856][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.867][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:50.869][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:50.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.871][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.878][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:03:50.879][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:50.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.881][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.888][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:50.889][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:50.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.891][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.898][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:50.899][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:50.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.901][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.916][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-50943-content.xml".
biodb.DEBUG[2024-07-13 16:03:50.918][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-07-13 16:03:50.919][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-07-13 16:03:50.921][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:03:50.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:50.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:50.930][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:50.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:50.932][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:50.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:03:50.970][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:50.972][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:50.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.974][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:50.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:50.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.982][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:50.984][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:50.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.986][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.989][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:50.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:50.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:50.994][ef$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:03:50.995][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:50.997][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:50.998][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:51.001][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:03:51.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:51.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:51.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:51.006][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:03:51.007][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:51.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:51.010][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:51.013][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:03:51.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:51.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:51.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:51.018][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:03:51.019][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:51.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:51.022][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:51.025][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:03:51.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:51.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:51.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:51.030][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:51.031][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:51.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:51.034][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:51.040][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:51.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:51.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:51.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:51.059][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:51.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:51.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:51.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:51.065][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:51.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:51.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:51.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:51.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:51.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:51.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:51.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:51.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:51.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:51.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:51.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:51.080][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:51.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:51.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:51.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:51.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:51.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:51.087][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:51.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:51.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:51.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:51.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:51.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:51.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:51.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:51.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:51.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:51.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:51.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:51.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:51.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:51.105][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:51.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:51.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:51.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:51.110][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:51.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:51.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:51.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:03:51.115][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 50943.
biodb.TRACE[2024-07-13 16:03:51.118][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:51.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:51.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:51.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:51.123][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:51.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:51.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:51.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:51.128][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:51.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:51.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:51.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:51.133][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:51.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:51.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:51.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:51.138][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:51.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:51.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:51.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:03:51.143][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-07-13 16:03:51.145][private$loadEntries] Creating entries from ids [1]: "CCDS14323.1".
biodb.DEBUG[2024-07-13 16:03:51.146][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-13 16:03:51.148][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS14323.1".
biodb.TRACE[2024-07-13 16:03:51.149][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-13 16:03:51.151][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-13 16:03:51.152][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-07-13 16:03:51.153][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-07-13 16:03:51.155][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-13 16:03:51.156][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-07-13 16:03:51.159][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:03:51.161][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:51.162][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:51.168][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:51.169][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:51.175][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:51.177][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:51.178][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.DEBUG[2024-07-13 16:03:51.182][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-13 16:03:51.184][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-13 16:03:51.185][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1".
biodb.TRACE[2024-07-13 16:03:52.537][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS14323.1).
biodb.DEBUG[2024-07-13 16:03:53.990][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-07-13 16:03:53.993][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.content"
biodb.TRACE[2024-07-13 16:03:53.998][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/848a237a5aab8c7ef76a9f895c87510f.request"
biodb.TRACE[2024-07-13 16:03:54.002][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS14323.1.html"
biodb.DEBUG[2024-07-13 16:03:54.004][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-13 16:03:54.006][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-07-13 16:03:54.007][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-07-13 16:03:54.009][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:03:54.011][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:54.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:54.018][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:54.019][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:54.020][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:54.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:03:54.048][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:54.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:54.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.053][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:54.055][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:54.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.057][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.059][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:54.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:54.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.065][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:54.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:54.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:54.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:54.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.075][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:54.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:54.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.080][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:54.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:54.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.085][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:54.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:54.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.090][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:54.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:54.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.095][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:54.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:54.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.100][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:54.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:54.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.106][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:54.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:54.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.121][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:54.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:54.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:03:54.127][self$createEntryFromContent] Accession numbers: CCDS14323.1.
biodb.TRACE[2024-07-13 16:03:54.128][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:54.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:54.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.133][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:54.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:54.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.138][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:54.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:54.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.143][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:03:54.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:03:54.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.148][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:03:54.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:03:54.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.153][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-13 16:03:54.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-13 16:03:54.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.158][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-13 16:03:54.160][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-13 16:03:54.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.164][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:54.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:54.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.175][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:54.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:54.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.185][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:54.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:54.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.191][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:54.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:54.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.196][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:54.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:54.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.203][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:54.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:54.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:54.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:54.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:54.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:54.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.220][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:54.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:54.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.225][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:54.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:54.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.231][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:54.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:54.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.249][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:54.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:54.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:54.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:54.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.260][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:54.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:54.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.266][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:54.267][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:54.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.269][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.271][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:54.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:54.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.286][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:03:54.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:54.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.292][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:54.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:54.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.297][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:54.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:54.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.302][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:03:54.303][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:54.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.306][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.307][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:03:54.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:54.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.322][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:03:54.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:54.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.327][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:54.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:54.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.332][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:54.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:54.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.337][ef$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:03:54.339][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:54.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.341][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.342][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:03:54.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:54.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.358][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:54.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:54.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.363][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:54.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:54.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.368][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:54.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:54.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.379][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:54.380][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:54.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.383][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.384][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:54.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:54.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.399][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:54.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:54.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.404][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:54.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:54.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:54.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:54.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.414][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:54.416][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:54.417][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.418][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:54.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:54.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.434][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:54.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:54.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.440][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:54.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:54.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.445][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:54.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:54.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.450][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:54.451][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:54.452][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.453][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.455][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:54.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:54.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.470][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:03:54.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:54.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.475][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:03:54.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:54.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.480][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:03:54.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:54.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.486][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:03:54.487][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:54.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.489][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.491][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:03:54.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:54.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.511][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:54.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:54.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.517][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:54.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:54.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.522][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:54.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:54.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.527][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:54.528][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:54.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.530][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.532][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:54.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:54.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.547][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:54.548][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:54.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.551][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.557][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:54.559][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:54.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.561][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.567][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:54.569][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:54.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.571][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.578][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:54.579][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:54.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.581][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.588][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:54.589][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:54.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.592][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.598][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:03:54.599][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:54.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.602][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.608][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:54.610][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:54.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.612][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.619][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:54.620][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:54.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.627][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.636][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-5551-content.xml".
biodb.DEBUG[2024-07-13 16:03:54.638][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-07-13 16:03:54.639][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-07-13 16:03:54.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:03:54.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:54.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:54.650][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:54.651][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:54.652][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:54.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:03:54.664][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:54.666][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:54.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.668][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.670][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:54.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:54.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.675][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:54.676][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:54.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.679][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.681][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:54.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:54.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.686][ef$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:03:54.687][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:54.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.690][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.692][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:03:54.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:54.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.697][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:03:54.698][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:54.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.701][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.703][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:03:54.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:54.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.708][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:03:54.709][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:54.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.712][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.714][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:03:54.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:54.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.719][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:54.720][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:54.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.722][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.725][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:54.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:54.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.732][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:54.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:54.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.737][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:54.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:54.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.742][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:54.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:54.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:54.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:54.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.753][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:54.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:54.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.758][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:54.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:54.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.768][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:54.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:54.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.773][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:54.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:54.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:54.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:54.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:54.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:54.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.789][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:54.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:54.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:03:54.794][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 5551.
biodb.TRACE[2024-07-13 16:03:54.796][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:54.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:54.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.801][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:54.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:54.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:54.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:54.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.811][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:54.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:54.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:54.816][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:54.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:54.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:54.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:03:54.821][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-07-13 16:03:54.822][private$loadEntries] Creating entries from ids [1]: "CCDS7305.1".
biodb.DEBUG[2024-07-13 16:03:54.823][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-13 16:03:54.825][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS7305.1".
biodb.TRACE[2024-07-13 16:03:54.827][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-13 16:03:54.828][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-13 16:03:54.830][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-07-13 16:03:54.831][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-07-13 16:03:54.832][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-13 16:03:54.834][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-07-13 16:03:54.837][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:03:54.838][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:54.839][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:54.846][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:54.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:54.848][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:54.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:54.850][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.DEBUG[2024-07-13 16:03:54.854][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-13 16:03:54.855][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-13 16:03:54.857][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1".
biodb.TRACE[2024-07-13 16:03:56.627][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS7305.1).
biodb.DEBUG[2024-07-13 16:03:58.009][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-07-13 16:03:58.012][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.content"
biodb.TRACE[2024-07-13 16:03:58.117][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/f6e550a9933c9781434f396895082740.request"
biodb.TRACE[2024-07-13 16:03:58.121][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS7305.1.html"
biodb.DEBUG[2024-07-13 16:03:58.124][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-13 16:03:58.125][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-07-13 16:03:58.127][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-07-13 16:03:58.129][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:03:58.130][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:58.131][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:58.145][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:58.146][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:58.147][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:58.149][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:03:58.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:58.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:58.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.178][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:58.179][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:58.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.182][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.183][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:58.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:58.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.189][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:58.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:58.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.194][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:58.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:58.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.199][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:58.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:58.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.204][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:58.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:58.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:58.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:58.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.214][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:58.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:58.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:58.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:58.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.224][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:58.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:58.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.229][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:58.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:58.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.234][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:58.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:58.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:03:58.239][self$createEntryFromContent] Accession numbers: CCDS7305.1.
biodb.TRACE[2024-07-13 16:03:58.241][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:58.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:58.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.246][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:58.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:58.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.251][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:58.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:58.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.256][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:03:58.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:03:58.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.261][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:03:58.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:03:58.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.266][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-13 16:03:58.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-13 16:03:58.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.419][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-13 16:03:58.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-13 16:03:58.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:58.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:58.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.435][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:58.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:58.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:58.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:58.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:58.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:58.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:58.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:58.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.462][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:58.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:58.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.467][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:58.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:58.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.472][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:58.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:58.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.477][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:58.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:58.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.482][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:58.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:58.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.487][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:58.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:58.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:58.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:58.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.505][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:58.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:58.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.510][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:58.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:58.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.515][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:58.516][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:58.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.518][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:58.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:58.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.534][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:03:58.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:58.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.539][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:58.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:58.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.544][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:58.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:58.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.550][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:03:58.551][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:58.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.553][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.555][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:03:58.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:58.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.570][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:03:58.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:58.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.576][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:58.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:58.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.583][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:58.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:58.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.589][ef$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:03:58.590][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:58.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.593][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.595][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:03:58.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:58.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.612][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:58.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:58.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.618][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:58.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:58.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.624][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:58.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:58.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.630][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:58.632][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:58.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.635][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.636][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:58.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:58.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.654][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:58.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:58.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.660][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:58.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:58.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.666][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:58.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:58.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.671][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:58.673][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:58.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.675][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.676][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:58.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:58.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.695][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:58.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:58.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.701][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:58.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:58.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.707][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:58.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:58.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.713][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:58.715][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:58.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.718][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.719][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:58.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:58.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.737][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:03:58.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:58.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.744][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:03:58.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:58.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.750][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:03:58.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:58.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.756][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:03:58.757][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:58.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.760][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.762][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:03:58.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:58.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.780][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:58.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:58.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.786][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:58.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:58.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.792][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:58.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:58.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.798][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:58.800][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:58.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.803][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.805][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:03:58.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:58.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.823][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:58.825][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:58.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.828][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.835][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:58.837][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:58.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.839][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.846][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:58.848][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:58.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.851][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.858][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:58.860][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:58.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.863][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.871][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:58.873][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:58.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.876][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.883][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:03:58.885][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:58.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.888][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.895][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:58.897][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:58.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.900][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.907][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:58.909][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:58.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.912][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.921][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-916-content.xml".
biodb.DEBUG[2024-07-13 16:03:58.923][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-07-13 16:03:58.925][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-07-13 16:03:58.927][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:03:58.928][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:58.930][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:58.937][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:58.938][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:58.939][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:58.941][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:03:58.952][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:58.954][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:58.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.962][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.964][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:58.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:58.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.969][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:58.970][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:58.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.972][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.974][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:03:58.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:03:58.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.979][ef$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:03:58.980][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:58.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.982][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.984][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:03:58.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:03:58.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.989][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:03:58.991][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:58.992][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.993][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:58.995][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:03:58.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:03:58.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:58.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:59.000][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:03:59.001][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:59.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:59.003][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:59.005][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:03:59.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:03:59.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:59.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:59.010][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:59.011][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:59.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:59.013][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:59.016][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:59.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:03:59.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:59.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:59.022][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:59.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:59.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:59.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:59.027][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:59.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:59.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:59.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:59.032][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:59.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:59.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:59.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:59.037][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:59.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:59.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:59.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:59.042][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:59.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:03:59.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:59.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:59.047][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:59.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:59.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:59.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:59.052][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:59.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:59.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:59.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:59.056][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:59.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:59.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:59.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:59.061][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:59.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:59.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:59.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:59.066][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:59.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:59.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:59.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:59.071][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:03:59.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:03:59.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:59.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:03:59.076][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 916.
biodb.TRACE[2024-07-13 16:03:59.078][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:59.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:59.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:59.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:59.083][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:03:59.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:03:59.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:59.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:59.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:59.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:59.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:59.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:59.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:59.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:59.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:59.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:03:59.098][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:59.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:03:59.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:03:59.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:03:59.103][private$computeField] Compute value for field "aa.seq".
biodb.DEBUG[2024-07-13 16:03:59.104][private$loadEntries] Creating entries from ids [1]: "CCDS31685.1".
biodb.DEBUG[2024-07-13 16:03:59.105][conn$getEntryContent] Get NCBI CCDS entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-13 16:03:59.107][cch$loadFileContent] Trying to load 1 files from cache: [1]: "CCDS31685.1".
biodb.TRACE[2024-07-13 16:03:59.109][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-13 16:03:59.110][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-13 16:03:59.111][conn$getEntryContent] 0 NCBI CCDS entry content(s) loaded from cache.
biodb.DEBUG[2024-07-13 16:03:59.113][conn$getEntryContent] 1 entry content(s) need to be fetched from NCBI CCDS database "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-07-13 16:03:59.114][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-13 16:03:59.115][conn$getEntryContent] 1 chunk(s) to download.
biodb.DEBUG[2024-07-13 16:03:59.119][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:03:59.120][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:03:59.121][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:03:59.127][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:03:59.128][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:03:59.129][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:03:59.130][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:03:59.132][scheduler$sendRequest] Getting content of get URL request "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.DEBUG[2024-07-13 16:03:59.135][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-13 16:03:59.136][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-13 16:03:59.138][private$doSendRequestOnce] Sent URL is "https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1".
biodb.TRACE[2024-07-13 16:04:00.510][getRCurlRequestResult] Using RCurl package for sending request (https://www.ncbi.nlm.nih.gov/CCDS/CcdsBrowse.cgi?REQUEST=CCDS&GO=MainBrowse&DATA=CCDS31685.1).
biodb.DEBUG[2024-07-13 16:04:01.936][scheduler$sendRequest] Saving content of request to cache.
biodb.TRACE[2024-07-13 16:04:01.939][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.content"
biodb.TRACE[2024-07-13 16:04:01.970][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/05b58486648daa4e8cf1dfaa5386f480.request"
biodb.TRACE[2024-07-13 16:04:01.973][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.ccds-c3bf0257a03be04fd46e362b99907704/CCDS31685.1.html"
biodb.DEBUG[2024-07-13 16:04:01.975][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-13 16:04:01.977][self$createEntryFromContent] Creating NCBI CCDS entries from 1 content(s).
biodb.DEBUG[2024-07-13 16:04:01.978][self$createEntryFromContent] Parsing 1 NCBI CCDS entries.
biodb.DEBUG[2024-07-13 16:04:01.980][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:01.981][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:01.982][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:01.989][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:01.990][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:01.991][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:01.992][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:02.013][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.018][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:04:02.019][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:04:02.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.022][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.023][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:04:02.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:04:02.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.029][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:02.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:02.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.034][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:02.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:02.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.039][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.044][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:02.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:02.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.049][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.059][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.064][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.069][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:02.079][self$createEntryFromContent] Accession numbers: CCDS31685.1.
biodb.TRACE[2024-07-13 16:04:02.081][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:04:02.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:04:02.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.086][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:04:02.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:04:02.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.091][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:04:02.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:04:02.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.096][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:04:02.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:04:02.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.101][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:04:02.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:04:02.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.106][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-13 16:04:02.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-13 16:04:02.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.113][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-13 16:04:02.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-13 16:04:02.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.129][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:02.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:02.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.170][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.183][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.200][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.205][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.210][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.215][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:02.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:02.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.220][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:02.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:02.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.225][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:02.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:02.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.247][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.252][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.254][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.256][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.257][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.272][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:04:02.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:02.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.277][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:02.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:02.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.282][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:02.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:02.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.287][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:04:02.288][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:02.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.295][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.301][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:04:02.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:02.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.315][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:04:02.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:04:02.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.320][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-07-13 16:04:02.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:04:02.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.325][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-07-13 16:04:02.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:04:02.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.330][ef$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:04:02.331][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:04:02.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.334][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.335][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:04:02.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:04:02.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.350][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:02.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:02.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.355][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:02.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:02.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.360][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:02.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:02.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.365][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:02.366][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:02.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.369][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.370][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:02.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:02.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.384][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:02.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:02.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.390][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:02.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:02.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.395][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:02.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:02.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.400][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:02.401][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:02.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.403][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.405][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:02.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:02.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.420][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:04:02.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:04:02.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.425][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:04:02.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:04:02.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.430][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:04:02.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:04:02.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.435][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:04:02.436][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:04:02.437][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.439][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.440][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:04:02.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:04:02.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.455][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:02.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:02.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.460][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:02.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:02.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.465][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:02.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:02.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.470][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:02.472][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:02.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.474][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.475][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:02.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:02.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.490][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:04:02.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:04:02.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.496][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:04:02.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:04:02.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.501][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:04:02.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:04:02.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.506][ef$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:04:02.507][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:04:02.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.510][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.511][self$getBiodb()$getEntryFields()$get] Asked field names are: sequence.
biodb.TRACE[2024-07-13 16:04:02.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:04:02.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.526][ef$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:04:02.528][ef$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:04:02.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.530][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.536][ef$get] Asked field names are: aa.seq.location.
biodb.TRACE[2024-07-13 16:04:02.538][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:04:02.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.540][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.547][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.548][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.550][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.557][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:04:02.558][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:04:02.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.561][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.567][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:02.568][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:02.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.570][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.577][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:02.578][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:02.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.580][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.587][ef$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:02.588][ef$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:02.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.590][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.597][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:02.598][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:02.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.600][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.607][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.gene-9606-content.xml".
biodb.DEBUG[2024-07-13 16:04:02.608][biodb$getFactory()$createEntryFromCo ...] Creating NCBI Gene entries from 1 content(s).
biodb.DEBUG[2024-07-13 16:04:02.609][biodb$getFactory()$createEntryFromCo ...] Parsing 1 NCBI Gene entries.
biodb.DEBUG[2024-07-13 16:04:02.611][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:02.612][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:02.613][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:02.619][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:02.620][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:02.621][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:02.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:02.625][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.626][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.629][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.630][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.635][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:04:02.636][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:04:02.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.639][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.640][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:04:02.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:04:02.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.645][ef$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:04:02.647][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:04:02.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.649][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.650][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:04:02.652][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:02.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.654][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.655][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:04:02.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:02.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.660][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:04:02.662][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:02.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.664][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.665][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:02.667][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:02.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.669][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.671][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:02.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:02.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.675][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:02.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:02.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.680][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.685][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:02.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:02.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.690][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.695][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.715][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:02.719][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 9606.
biodb.TRACE[2024-07-13 16:04:02.722][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:04:02.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:04:02.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.727][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:04:02.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:04:02.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.732][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:02.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:02.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.737][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:04:02.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:04:02.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.742][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:04:02.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:04:02.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.747][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-13 16:04:02.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-13 16:04:02.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.752][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-13 16:04:02.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-13 16:04:02.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.801][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.812][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:02.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:02.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.822][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.827][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.832][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.849][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.854][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:02.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:02.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:02.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:02.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.864][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:02.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:02.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.876][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.881][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.886][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.891][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.892][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.894][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.896][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.910][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:04:02.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:02.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.915][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:02.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:02.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.920][self$getBiodb()$getEntryFields()$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:02.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:02.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.924][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:04:02.926][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:02.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.928][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.929][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:04:02.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:02.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.944][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:04:02.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:04:02.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.949][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:04:02.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:04:02.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.953][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:04:02.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:04:02.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.958][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:04:02.960][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:04:02.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.962][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.963][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:04:02.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:04:02.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.978][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:02.979][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:02.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.982][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.988][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:04:02.990][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:04:02.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:02.992][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:02.998][ef$get] Asked field names are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:03.000][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:03.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.002][ef$get] fields variable is a list.
biodb.INFO [2024-07-13 16:04:03.012][biodb::testThat]
biodb.INFO [2024-07-13 16:04:03.013][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-07-13 16:04:03.015][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:04:03.016][biodb::testThat]
biodb.DEBUG[2024-07-13 16:04:03.019][private$loadEntries] Creating entries from ids [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.DEBUG[2024-07-13 16:04:03.020][conn$getEntryContent] Get NCBI Gene entry content(s) for 8 id(s)...
biodb.TRACE[2024-07-13 16:04:03.022][cch$loadFileContent] Trying to load 8 files from cache: [8]: "2833, 3002, 3627, 4316, 50943, 5551, 916, 9606".
biodb.TRACE[2024-07-13 16:04:03.024][cch$loadFileContent] file.exist = [8]: "TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE, TRUE".
biodb.TRACE[2024-07-13 16:04:03.063][loadFileContents] Loaded 8 files from cache: [8]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/2833.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3002.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/3627.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/4316.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/50943.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/5551.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/916.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/9606.xml".
biodb.DEBUG[2024-07-13 16:04:03.065][conn$getEntryContent] 8 NCBI Gene entry content(s) loaded from cache.
biodb.DEBUG[2024-07-13 16:04:03.067][self$createEntryFromContent] Creating NCBI Gene entries from 8 content(s).
biodb.DEBUG[2024-07-13 16:04:03.068][self$createEntryFromContent] Parsing 8 NCBI Gene entries.
biodb.DEBUG[2024-07-13 16:04:03.070][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:03.071][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:03.072][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:03.079][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:03.081][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:03.083][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:03.084][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:03.100][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.102][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.105][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.107][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.112][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:04:03.114][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:04:03.115][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.116][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.118][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:04:03.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:04:03.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.123][ef$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:04:03.125][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:04:03.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.127][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.129][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:04:03.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:04:03.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.134][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:04:03.136][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:03.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.138][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.140][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:04:03.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:03.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.145][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:04:03.147][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:03.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.149][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.151][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:04:03.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:03.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.156][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:03.158][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:03.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.160][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.163][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:03.165][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:03.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.173][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:03.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:03.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.178][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.183][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.188][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.193][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.198][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.204][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.209][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:03.214][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:03.215][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:03.216][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:03.222][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:03.224][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:03.225][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:03.226][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:03.240][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.241][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.243][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.251][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:04:03.252][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:04:03.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.254][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.257][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:04:03.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:04:03.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.262][ef$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:04:03.264][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:04:03.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.266][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.268][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:04:03.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:04:03.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.274][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:04:03.275][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:03.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.278][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.280][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:04:03.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:03.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.285][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:04:03.287][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:03.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.289][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.291][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:04:03.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:03.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.297][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:03.298][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:03.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.300][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.304][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:03.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:03.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.313][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:03.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:03.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.318][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.323][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.333][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.351][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.356][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:03.362][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:03.363][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:03.364][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:03.370][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:03.371][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:03.372][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:03.373][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:03.398][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.399][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.401][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.403][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.411][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:04:03.412][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:04:03.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.415][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.417][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:04:03.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:04:03.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.422][ef$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:04:03.423][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:04:03.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.426][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.428][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:04:03.429][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:04:03.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.433][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:04:03.434][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:03.435][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.437][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.439][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:04:03.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:03.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.444][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:04:03.445][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:03.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.448][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.450][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:04:03.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:03.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.455][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:03.456][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:03.457][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.459][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.463][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:03.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:03.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.471][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:03.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:03.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.476][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.481][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.490][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:03.521][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:03.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:03.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:03.530][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:03.532][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:03.533][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:03.534][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:03.550][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.551][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.554][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.561][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:04:03.562][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:04:03.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.565][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.567][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:04:03.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:04:03.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.572][ef$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:04:03.573][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:04:03.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.576][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.578][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:04:03.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:04:03.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.583][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:04:03.584][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:03.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.587][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.589][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:04:03.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:03.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.594][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:04:03.595][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:03.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.598][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.600][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:04:03.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:03.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.605][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:03.606][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:03.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.608][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.612][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:03.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:03.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.619][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:03.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:03.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.624][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.628][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.633][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.638][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.643][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:03.658][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:03.659][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:03.660][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:03.666][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:03.667][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:03.668][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:03.669][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:03.715][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.717][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.721][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.731][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:04:03.733][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:04:03.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.735][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.738][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:04:03.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:04:03.741][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.743][ef$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:04:03.745][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:04:03.746][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.747][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.750][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:04:03.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:04:03.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.755][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:04:03.756][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:03.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.759][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.762][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:04:03.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:03.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.767][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:04:03.768][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:03.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.770][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.773][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:04:03.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:03.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.779][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:03.780][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:03.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.782][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.788][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:03.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:03.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.801][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:03.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:03.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.806][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.811][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.816][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.821][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.831][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.836][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:03.841][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:03.842][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:03.843][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:03.849][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:03.850][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:03.851][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:03.852][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:03.866][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.867][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.868][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.869][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.871][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.876][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:04:03.878][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:04:03.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.880][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.882][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:04:03.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:04:03.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.887][ef$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:04:03.888][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:04:03.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.891][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.893][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:04:03.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:04:03.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.898][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:04:03.899][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:03.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.901][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.903][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:04:03.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:03.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.908][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:04:03.910][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:03.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.912][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.914][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:04:03.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:03.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.919][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:03.920][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:03.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.923][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.925][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:03.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:03.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.932][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:03.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:03.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.937][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.962][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.967][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.972][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:03.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.977][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.982][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:03.987][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:03.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:03.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:03.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:03.992][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:03.993][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:03.994][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:04.000][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:04.001][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:04.002][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:04.003][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:04.016][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.017][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.020][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.022][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.027][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:04:04.028][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:04:04.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.031][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.033][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:04:04.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:04:04.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.038][ef$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:04:04.040][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:04:04.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.042][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.044][self$getBiodb()$getEntryFields()$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:04:04.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:04:04.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.049][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:04:04.051][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:04.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.053][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.055][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:04:04.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:04.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.060][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:04:04.061][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:04.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.064][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.066][self$getBiodb()$getEntryFields()$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:04:04.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:04.068][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.070][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:04.072][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:04.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.074][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.077][self$getBiodb()$getEntryFields()$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:04.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:04.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.083][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:04.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:04.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.088][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:04.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:04.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.093][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:04.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:04.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.098][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:04.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:04.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.108][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.113][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.117][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:04.122][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:04.124][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:04.125][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:04.131][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:04.132][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:04.133][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:04.134][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:04.137][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.138][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.140][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.147][ef$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:04:04.148][ef$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:04:04.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.150][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.152][self$getBiodb()$getEntryFields()$get] Asked field names are: description.
biodb.TRACE[2024-07-13 16:04:04.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: description.
biodb.TRACE[2024-07-13 16:04:04.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.157][ef$get] Asked field names are: location.
biodb.TRACE[2024-07-13 16:04:04.158][ef$get] Realnames of fields are: aa.seq.location.
biodb.TRACE[2024-07-13 16:04:04.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.160][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.162][ef$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:04:04.163][ef$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:04.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.165][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.167][self$getBiodb()$getEntryFields()$get] Asked field names are: symbol.
biodb.TRACE[2024-07-13 16:04:04.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: gene.symbol.
biodb.TRACE[2024-07-13 16:04:04.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.172][ef$get] Asked field names are: synonyms.
biodb.TRACE[2024-07-13 16:04:04.173][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:04.174][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.175][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.177][ef$get] Asked field names are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:04.178][ef$get] Realnames of fields are: uniprot.id.
biodb.TRACE[2024-07-13 16:04:04.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.180][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.182][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:04.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:04.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.187][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:04.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:04.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.197][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:04.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.gene.id.
biodb.TRACE[2024-07-13 16:04:04.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.206][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.211][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.216][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.226][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.231][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.236][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.251][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.256][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.261][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.266][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.270][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.275][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.285][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.305][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.310][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.315][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.320][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.325][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.330][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:04.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:04.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:04.335][self$createEntryFromContent] Accession numbers: 2833, 3002, 3627, 4316, 50943, 5551, 916, 9606.
biodb.TRACE[2024-07-13 16:04:04.337][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-07-13 16:04:04.338][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-07-13 16:04:04.339][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.340][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.342][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-07-13 16:04:04.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-07-13 16:04:04.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.347][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-07-13 16:04:04.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-07-13 16:04:04.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.357][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-07-13 16:04:04.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-07-13 16:04:04.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.362][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-07-13 16:04:04.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-07-13 16:04:04.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.367][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-07-13 16:04:04.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-07-13 16:04:04.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.377][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-07-13 16:04:04.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-07-13 16:04:04.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.382][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-07-13 16:04:04.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-07-13 16:04:04.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.387][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-07-13 16:04:04.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-07-13 16:04:04.390][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.397][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-07-13 16:04:04.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-07-13 16:04:04.400][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.401][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.403][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-07-13 16:04:04.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-07-13 16:04:04.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.408][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-07-13 16:04:04.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-07-13 16:04:04.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.418][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-07-13 16:04:04.419][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-07-13 16:04:04.420][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.429][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-07-13 16:04:04.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-07-13 16:04:04.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.434][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-07-13 16:04:04.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-07-13 16:04:04.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.444][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-07-13 16:04:04.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-07-13 16:04:04.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.449][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-07-13 16:04:04.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-07-13 16:04:04.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.454][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-07-13 16:04:04.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-07-13 16:04:04.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.464][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-07-13 16:04:04.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-07-13 16:04:04.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.469][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-07-13 16:04:04.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-07-13 16:04:04.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.474][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-07-13 16:04:04.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-07-13 16:04:04.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.485][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-07-13 16:04:04.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-07-13 16:04:04.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.490][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-07-13 16:04:04.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-07-13 16:04:04.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.495][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-07-13 16:04:04.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-07-13 16:04:04.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-13 16:04:04.509][biodb::testThat]
biodb.INFO [2024-07-13 16:04:04.510][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-07-13 16:04:04.511][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:04:04.512][biodb::testThat]
biodb.TRACE[2024-07-13 16:04:04.516][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:04.518][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:04.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.520][ef$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:04.521][function(conn, opt)] Testing searchForEntries() with entry "2833" and field "name".
biodb.TRACE[2024-07-13 16:04:04.536][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:04.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:04.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.541][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:04.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:04.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.546][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:04.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:04.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:04.554][function(conn, opt)] With value "GPR9".
biodb.DEBUG[2024-07-13 16:04:04.562][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2024-07-13 16:04:04.566][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:04.568][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2024-07-13 16:04:04.569][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:04.571][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.DEBUG[2024-07-13 16:04:04.573][function(conn, opt)] With found IDs [1]: "2833".
biodb.INFO [2024-07-13 16:04:04.591][biodb::testThat]
biodb.INFO [2024-07-13 16:04:04.593][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-07-13 16:04:04.594][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:04:04.595][biodb::testThat]
biodb.TRACE[2024-07-13 16:04:04.609][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:04.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:04.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.614][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:04.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:04.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.619][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:04.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:04.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:04.658][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=gene&term="GPR9"[Gene Name]&retmax=1".
biodb.DEBUG[2024-07-13 16:04:04.662][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:04.664][cch$loadFileContent] Trying to load 1 files from cache: [1]: "21e81c63f052370fa801f15c9311a3f4".
biodb.TRACE[2024-07-13 16:04:04.665][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:04.667][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.gene-b6d7417e507eb4f1a2e0047bde5295e8/21e81c63f052370fa801f15c9311a3f4.content".
biodb.INFO [2024-07-13 16:04:04.687][biodb::testThat]
biodb.INFO [2024-07-13 16:04:04.688][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-07-13 16:04:04.689][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:04:04.691][biodb::testThat]
biodb.TRACE[2024-07-13 16:04:04.703][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:04:04.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:04:04.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.709][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:04:04.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:04:04.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.714][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:04.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:04.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.719][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:04.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:04.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.724][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:04.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:04.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:04.728][private$computeField] Compute value for field "aa.seq".
biodb.TRACE[2024-07-13 16:04:04.730][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:04:04.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:04:04.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.735][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:04:04.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:04:04.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.740][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:04:04.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:04:04.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.745][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:04:04.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:04:04.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.750][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:04:04.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:04:04.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.755][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-13 16:04:04.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-13 16:04:04.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.760][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-13 16:04:04.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-13 16:04:04.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.766][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:04:04.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:04:04.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.771][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:04:04.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:04:04.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.776][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:04:04.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:04:04.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.781][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:04:04.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:04:04.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.786][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-13 16:04:04.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-13 16:04:04.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:04.791][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-13 16:04:04.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-13 16:04:04.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:04.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-13 16:04:04.803][biodb::testThat]
biodb.INFO [2024-07-13 16:04:04.804][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-07-13 16:04:04.806][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:04:04.807][biodb::testThat]
biodb.INFO [2024-07-13 16:04:04.821][biodb::testThat]
biodb.INFO [2024-07-13 16:04:04.822][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-07-13 16:04:04.824][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:04:04.825][biodb::testThat]
biodb.INFO [2024-07-13 16:04:04.835][biodb::testThat]
biodb.INFO [2024-07-13 16:04:04.836][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2024-07-13 16:04:04.837][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:04:04.839][biodb::testThat]
biodb.DEBUG[2024-07-13 16:04:04.844][function(conn, opt)] Trying to download "https://www.ncbi.nlm.nih.gov/gene?term=2833".
biodb.DEBUG[2024-07-13 16:04:07.657][getUrlContent] Use RCurl for downloading content of URL https://www.ncbi.nlm.nih.gov/gene?term=2833.
biodb.INFO [2024-07-13 16:04:11.110][biodb::testThat]
biodb.INFO [2024-07-13 16:04:11.112][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2024-07-13 16:04:11.113][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:04:11.114][biodb::testThat]
biodb.INFO [2024-07-13 16:04:11.122][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-13 16:04:11.124][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.gene from the request scheduler
biodb.INFO [2024-07-13 16:04:11.125][self$deleteConn] Connector "ncbi.gene" deleted.
biodb.DEBUG[2024-07-13 16:04:11.127][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.ccds from the request scheduler
biodb.INFO [2024-07-13 16:04:11.138][self$deleteConn] Connector "ncbi.ccds" deleted.
biodb.DEBUG[2024-07-13 16:04:11.139][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-13 16:04:11.140][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:11.141][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:11.142][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.144][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.153][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.154][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-13 16:04:11.158][biodb::testContext]
biodb.INFO [2024-07-13 16:04:11.160][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-13 16:04:11.161][biodb::testContext] Test context - Pubchem comp long tests
biodb.INFO [2024-07-13 16:04:11.162][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-13 16:04:11.163][biodb::testContext]
biodb.INFO [2024-07-13 16:04:11.166][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-07-13 16:04:11.167][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-13 16:04:11.172][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-13 16:04:11.173][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-13 16:04:11.174][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-13 16:04:11.175][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.176][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.178][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.179][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-13 16:04:11.180][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-13 16:04:11.181][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.185][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-13 16:04:11.186][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-13 16:04:11.187][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.189][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.190][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-13 16:04:11.192][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-13 16:04:11.193][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-13 16:04:11.194][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.196][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.197][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-13 16:04:11.199][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-13 16:04:11.200][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-13 16:04:11.201][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.202][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.203][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.204][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-13 16:04:11.206][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-13 16:04:11.207][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.208][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.209][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.210][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-13 16:04:11.212][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-13 16:04:11.213][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-13 16:04:11.214][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.215][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.216][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.218][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-13 16:04:11.219][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-13 16:04:11.220][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.221][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.222][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.223][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-13 16:04:11.225][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-13 16:04:11.226][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-13 16:04:11.227][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.228][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.231][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-13 16:04:11.232][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-13 16:04:11.233][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-13 16:04:11.234][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-13 16:04:11.236][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-13 16:04:11.237][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-13 16:04:11.238][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.239][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.240][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.242][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-13 16:04:11.243][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-13 16:04:11.244][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.245][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.246][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.247][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-13 16:04:11.249][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-13 16:04:11.250][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.251][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.252][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.253][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-13 16:04:11.255][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-13 16:04:11.256][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.257][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.258][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.259][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-13 16:04:11.261][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-13 16:04:11.262][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.263][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.265][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-13 16:04:11.267][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-13 16:04:11.268][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.269][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.271][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-13 16:04:11.273][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-13 16:04:11.282][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-13 16:04:11.284][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.285][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.286][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.287][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-13 16:04:11.288][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-13 16:04:11.289][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-13 16:04:11.291][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.292][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.293][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.294][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-13 16:04:11.296][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-13 16:04:11.298][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-13 16:04:11.299][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.300][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-13 16:04:11.301][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.303][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-13 16:04:11.304][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-13 16:04:11.305][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-13 16:04:11.306][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-13 16:04:11.308][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-13 16:04:11.309][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.310][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-13 16:04:11.311][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-13 16:04:11.312][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:11.314][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.315][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-13 16:04:11.315][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-13 16:04:11.315][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-13 16:04:11.315][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-13 16:04:11.315][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-13 16:04:11.316][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-13 16:04:11.317][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:04:11.318][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:04:11.320][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-13 16:04:11.321][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:04:11.322][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:04:11.323][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-13 16:04:11.324][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:11.326][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-13 16:04:11.327][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-13 16:04:11.328][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-13 16:04:11.329][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:11.331][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-13 16:04:11.333][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-13 16:04:11.334][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-13 16:04:11.335][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.337][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-13 16:04:11.338][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.339][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-13 16:04:11.340][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-13 16:04:11.342][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-13 16:04:11.343][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-13 16:04:11.344][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-13 16:04:11.346][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.347][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-13 16:04:11.348][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-13 16:04:11.349][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:11.351][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.352][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-13 16:04:11.352][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-13 16:04:11.352][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-13 16:04:11.352][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-13 16:04:11.352][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-13 16:04:11.353][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-13 16:04:11.354][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:04:11.356][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:04:11.357][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-13 16:04:11.358][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:04:11.359][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:04:11.360][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-13 16:04:11.362][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:11.363][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-13 16:04:11.364][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-13 16:04:11.365][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-13 16:04:11.366][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:11.368][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-13 16:04:11.370][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.371][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-13 16:04:11.372][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.374][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-13 16:04:11.375][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.376][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-13 16:04:11.377][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-13 16:04:11.379][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-13 16:04:11.380][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-13 16:04:11.381][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-13 16:04:11.382][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-13 16:04:11.384][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-13 16:04:11.385][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-13 16:04:11.386][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:11.387][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.388][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:11.390][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-13 16:04:11.391][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:04:11.392][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:04:11.393][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-13 16:04:11.394][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:04:11.395][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:04:11.396][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-13 16:04:11.398][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:11.399][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-13 16:04:11.400][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-13 16:04:11.401][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-13 16:04:11.402][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:11.404][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-13 16:04:11.406][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.407][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-13 16:04:11.409][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.410][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-13 16:04:11.411][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.412][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-13 16:04:11.414][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-13 16:04:11.415][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-13 16:04:11.416][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-13 16:04:11.417][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-13 16:04:11.419][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-13 16:04:11.420][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-13 16:04:11.421][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-13 16:04:11.422][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:11.424][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.425][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:11.426][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-13 16:04:11.427][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:04:11.428][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:04:11.429][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-13 16:04:11.431][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:04:11.432][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:04:11.433][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-13 16:04:11.434][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:11.435][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-13 16:04:11.437][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-13 16:04:11.438][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-13 16:04:11.439][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:11.441][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-13 16:04:11.442][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.443][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.444][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.445][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.446][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.447][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.448][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.449][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.451][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.453][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.454][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.455][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.456][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.457][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.458][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.459][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.460][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.462][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.463][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.464][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.465][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.466][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.467][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.469][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.471][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.473][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.474][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.475][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.476][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.477][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.478][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.479][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.480][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.481][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.483][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.484][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.485][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.486][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.487][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.488][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.489][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.491][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.494][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.495][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.496][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.497][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.498][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.499][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.500][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.502][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.505][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.506][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.508][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.510][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.511][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.512][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.513][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.515][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.516][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.517][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.518][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.519][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.520][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.521][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.522][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.524][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.526][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.527][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.528][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.529][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.530][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.532][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.533][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.534][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.535][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.537][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.538][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-13 16:04:11.540][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-13 16:04:11.541][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-13 16:04:11.543][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-13 16:04:11.545][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-13 16:04:11.546][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-13 16:04:11.548][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-13 16:04:11.550][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-13 16:04:11.552][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-13 16:04:11.553][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-13 16:04:11.555][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-13 16:04:11.557][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-13 16:04:11.558][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-13 16:04:11.560][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-13 16:04:11.562][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-13 16:04:11.564][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-13 16:04:11.565][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-13 16:04:11.567][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-13 16:04:11.569][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-13 16:04:11.570][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-13 16:04:11.572][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-13 16:04:11.574][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-13 16:04:11.576][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-13 16:04:11.577][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-13 16:04:11.579][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-13 16:04:11.581][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-13 16:04:11.583][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-13 16:04:11.584][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-13 16:04:11.586][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-13 16:04:11.588][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-13 16:04:11.590][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-13 16:04:11.592][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-13 16:04:11.598][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-13 16:04:11.600][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-13 16:04:11.601][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-13 16:04:11.603][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-13 16:04:11.605][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-13 16:04:11.606][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-13 16:04:11.608][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-13 16:04:11.610][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-13 16:04:11.611][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-13 16:04:11.613][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-13 16:04:11.615][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-13 16:04:11.616][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-13 16:04:11.618][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-13 16:04:11.620][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-13 16:04:11.622][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-13 16:04:11.623][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-13 16:04:11.625][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-13 16:04:11.627][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-13 16:04:11.628][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-13 16:04:11.630][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-13 16:04:11.632][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-13 16:04:11.633][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-13 16:04:11.635][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-13 16:04:11.637][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-13 16:04:11.638][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-13 16:04:11.640][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-13 16:04:11.642][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-13 16:04:11.644][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-13 16:04:11.646][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-13 16:04:11.647][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-13 16:04:11.649][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-13 16:04:11.651][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-13 16:04:11.652][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-13 16:04:11.654][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-13 16:04:11.656][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-13 16:04:11.658][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-13 16:04:11.659][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-13 16:04:11.661][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-13 16:04:11.663][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-13 16:04:11.664][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-13 16:04:11.666][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-13 16:04:11.668][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-13 16:04:11.669][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-13 16:04:11.671][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-13 16:04:11.673][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-13 16:04:11.675][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-13 16:04:11.676][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-13 16:04:11.678][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-13 16:04:11.680][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-13 16:04:11.681][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-13 16:04:11.683][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-13 16:04:11.685][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-13 16:04:11.687][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-07-13 16:04:11.688][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-13 16:04:11.689][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.691][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.693][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.695][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:11.696][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:11.697][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.698][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.699][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.700][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.701][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.702][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:11.703][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:11.704][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.706][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.707][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.708][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.709][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.710][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:11.711][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:11.712][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.713][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.714][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.715][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.717][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.718][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:11.719][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:11.720][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.722][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.724][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.725][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:11.727][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:11.728][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.730][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.732][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.733][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:11.734][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:11.735][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.736][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.738][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.739][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.740][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.741][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:11.742][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:11.743][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.744][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.745][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.746][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.748][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.749][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:11.750][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:11.751][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.752][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.753][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.754][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.755][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.756][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:11.757][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:11.759][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.760][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.761][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.762][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.763][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.764][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:11.765][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:11.766][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.767][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.769][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.771][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.772][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:11.773][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:11.774][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.775][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.776][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.777][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.779][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.780][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:11.781][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:11.782][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.783][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.784][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.785][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.786][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.787][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:11.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:11.789][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.791][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.792][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.793][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.794][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.795][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:11.796][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:11.797][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.798][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.799][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.802][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.803][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:11.804][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:11.805][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.806][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.807][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.808][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.809][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.810][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:11.812][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:11.813][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.815][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.817][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:11.818][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:11.819][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:11.820][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:11.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:11.823][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:11.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:11.826][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-07-13 16:04:11.828][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-07-13 16:04:11.831][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.832][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-07-13 16:04:11.833][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.834][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-13 16:04:11.836][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.837][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-13 16:04:11.838][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.839][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-13 16:04:11.841][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-07-13 16:04:11.842][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-13 16:04:11.843][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.844][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-07-13 16:04:11.846][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-13 16:04:11.847][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-07-13 16:04:11.847][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-07-13 16:04:11.848][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-13 16:04:11.849][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:11.851][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-13 16:04:11.852][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:04:11.853][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:04:11.854][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-13 16:04:11.855][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:04:11.857][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:04:11.858][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-13 16:04:11.859][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-07-13 16:04:11.859][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-07-13 16:04:11.860][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-13 16:04:11.861][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-13 16:04:11.863][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.864][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:11.865][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-07-13 16:04:11.868][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.869][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-07-13 16:04:11.870][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.871][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-13 16:04:11.873][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.874][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-13 16:04:11.875][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.876][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-13 16:04:11.878][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-13 16:04:11.879][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-13 16:04:11.880][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.881][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-07-13 16:04:11.883][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-13 16:04:11.884][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-07-13 16:04:11.884][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-07-13 16:04:11.884][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-07-13 16:04:11.884][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-07-13 16:04:11.884][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-07-13 16:04:11.884][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-07-13 16:04:11.885][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-13 16:04:11.887][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-13 16:04:11.888][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-13 16:04:11.889][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:04:11.890][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:04:11.891][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-13 16:04:11.893][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:04:11.894][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:04:11.895][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-13 16:04:11.896][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-07-13 16:04:11.896][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-07-13 16:04:11.897][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-13 16:04:11.898][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-13 16:04:11.900][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.901][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:11.902][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-07-13 16:04:11.905][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-13 16:04:11.906][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-07-13 16:04:11.907][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.909][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-13 16:04:11.910][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.911][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-13 16:04:11.912][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.914][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-13 16:04:11.915][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-13 16:04:11.916][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-13 16:04:11.917][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.919][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-07-13 16:04:11.920][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-13 16:04:11.921][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-07-13 16:04:11.921][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:04:11.921][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:04:11.921][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:04:11.921][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:04:11.921][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:04:11.921][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:04:11.921][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:04:11.921][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:04:11.921][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:04:11.921][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-07-13 16:04:11.921][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:04:11.921][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:04:11.921][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:04:11.923][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-13 16:04:11.924][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-13 16:04:11.924][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-13 16:04:11.924][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-13 16:04:11.925][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-07-13 16:04:11.926][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:04:11.928][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:04:11.929][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-13 16:04:11.930][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:04:11.931][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:04:11.932][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-13 16:04:11.934][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-07-13 16:04:11.934][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-07-13 16:04:11.934][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-07-13 16:04:11.935][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-13 16:04:11.936][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-13 16:04:11.937][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.939][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-07-13 16:04:11.940][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-07-13 16:04:11.943][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.944][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-07-13 16:04:11.945][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.947][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-13 16:04:11.948][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.949][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-13 16:04:11.950][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.952][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-13 16:04:11.953][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-13 16:04:11.954][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-13 16:04:11.956][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.957][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-07-13 16:04:11.958][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-13 16:04:11.959][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-07-13 16:04:11.959][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-07-13 16:04:11.961][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-13 16:04:11.962][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:11.963][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-07-13 16:04:11.965][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:04:11.966][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:04:11.967][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-13 16:04:11.968][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:04:11.969][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:04:11.971][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-13 16:04:11.972][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-07-13 16:04:11.972][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-07-13 16:04:11.972][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-07-13 16:04:11.973][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-13 16:04:11.974][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-13 16:04:11.976][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:11.977][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-07-13 16:04:11.979][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-07-13 16:04:11.980][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-13 16:04:11.982][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-13 16:04:11.984][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-07-13 16:04:11.986][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-13 16:04:11.988][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-07-13 16:04:11.997][super$initialize] Initialize connector ncbi.pubchem.comp.
biodb.DEBUG[2024-07-13 16:04:11.998][super$initialize] Register connector ncbi.pubchem.comp with the request scheduler
biodb.DEBUG[2024-07-13 16:04:12.000][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.comp.
biodb.DEBUG[2024-07-13 16:04:12.001][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2024-07-13 16:04:12.003][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-07-13 16:04:12.004][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-07-13 16:04:12.006][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.comp".
biodb.DEBUG[2024-07-13 16:04:12.007][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-07-13 16:04:12.009][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-07-13 16:04:12.010][rule$addConnector] Connector "ncbi.pubchem.comp" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-07-13 16:04:12.016][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.comp for database class ncbi.pubchem.comp .
biodb.INFO [2024-07-13 16:04:12.021][biodb::testThat]
biodb.INFO [2024-07-13 16:04:12.023][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-07-13 16:04:12.024][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:04:12.025][biodb::testThat]
biodb.TRACE[2024-07-13 16:04:12.028][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-2-content.xml".
biodb.DEBUG[2024-07-13 16:04:12.037][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-07-13 16:04:12.048][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-07-13 16:04:12.050][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:12.051][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:12.052][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:12.059][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:12.060][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:12.061][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:12.062][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:12.067][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:12.068][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:12.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.071][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.072][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:12.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:12.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.077][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:12.079][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:12.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.081][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:12.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:12.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.088][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:12.089][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:12.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.091][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.093][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:12.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:12.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.098][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:12.099][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:12.100][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.102][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.103][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:12.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:12.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.108][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:12.110][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:12.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.112][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:12.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:12.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.119][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:12.120][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:12.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.122][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:12.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:12.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.129][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:12.130][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:12.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.133][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.134][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:12.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:12.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.139][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:12.141][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:12.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.143][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.145][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:12.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:12.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.150][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:12.151][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:12.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.153][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.155][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:12.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:12.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.160][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:12.161][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:12.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.164][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.165][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:12.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:12.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.171][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:12.172][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:12.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.174][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.176][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:12.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:12.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.181][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:12.182][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:12.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.185][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:12.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:12.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.192][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:12.193][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:12.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.195][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.197][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:12.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:12.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.202][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:12.203][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:12.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.206][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.207][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:12.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:12.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.213][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-07-13 16:04:12.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:12.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.218][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:12.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:12.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:12.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:12.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.228][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-07-13 16:04:12.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:12.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:12.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:12.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:12.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:12.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.243][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-07-13 16:04:12.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:12.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:12.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:12.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:12.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:12.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.258][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-07-13 16:04:12.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:12.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:12.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:12.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.268][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:12.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:12.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.273][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-07-13 16:04:12.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:12.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.278][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:12.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:12.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.283][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:12.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:12.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.288][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:12.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:12.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.294][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:12.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:12.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.299][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:12.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:12.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.304][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:12.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:12.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.309][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:12.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:12.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.314][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:12.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:12.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.319][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:12.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:12.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.324][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:12.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:12.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:12.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:12.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:12.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:12.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.339][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:12.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:12.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:12.344][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 2.
biodb.TRACE[2024-07-13 16:04:12.347][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:04:12.348][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:04:12.349][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.350][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.352][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:04:12.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:04:12.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.357][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:12.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:12.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.362][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:04:12.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:04:12.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.367][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:04:12.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:04:12.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.371][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.372][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-13 16:04:12.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-13 16:04:12.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.377][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-13 16:04:12.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-13 16:04:12.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:12.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:12.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.394][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:12.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:12.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:12.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:12.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.409][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:12.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:12.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.414][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:12.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:12.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.421][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:12.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:12.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.426][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:12.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:12.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.431][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:12.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:12.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.436][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:12.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:12.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.441][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:12.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:12.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.446][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:12.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:12.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:12.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:12.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:12.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:12.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:12.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:12.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.474][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:12.476][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:12.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.478][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:12.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:12.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.500][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:12.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:12.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.505][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:12.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:12.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.510][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:12.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:12.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.515][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:12.517][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:12.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.519][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.520][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:12.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:12.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.535][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:12.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:12.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.540][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:12.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:12.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.545][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:12.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:12.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.550][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:12.551][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:12.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.554][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.555][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:12.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:12.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.570][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:12.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:12.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.575][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:12.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:12.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.580][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:12.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:12.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.585][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:12.586][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:12.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.589][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.590][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:12.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:12.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.605][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:12.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:12.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.610][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:12.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:12.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.615][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:12.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:12.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.620][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:12.622][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:12.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.624][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.625][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:12.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:12.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.641][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:12.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:12.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.646][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:12.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:12.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.651][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:12.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:12.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.656][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:12.657][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:12.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.659][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.661][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:12.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:12.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.675][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:12.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:12.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.680][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:12.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:12.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.685][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:12.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:12.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.690][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:12.691][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:12.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.693][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.695][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:12.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:12.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.710][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:12.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:12.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.715][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:12.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:12.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:12.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:12.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.724][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:12.726][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:12.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.728][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:12.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:12.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:12.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:12.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:12.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:12.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:12.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:12.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.759][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:12.760][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:12.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.763][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:12.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:12.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.779][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:12.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:12.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.784][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:12.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:12.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:12.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:12.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.794][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:12.795][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:12.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.797][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:12.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:12.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.813][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:12.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:12.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.819][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:12.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:12.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.824][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:12.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:12.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.829][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:12.830][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:12.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.832][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.834][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:12.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:12.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:12.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:12.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:12.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:12.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:12.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:12.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.864][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:12.865][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:12.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.868][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.869][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:12.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:12.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.884][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:12.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:12.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.889][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:12.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:12.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.894][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:12.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:12.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.899][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:12.901][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:12.902][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.903][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.904][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:12.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:12.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.919][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:12.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:12.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:12.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:12.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.928][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.930][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:12.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:12.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.935][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:12.936][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:12.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.939][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:12.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:12.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.961][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:12.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:12.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:12.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:12.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.971][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:12.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:12.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.976][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:12.978][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:12.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.980][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.981][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:12.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:12.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:12.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:12.996][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:12.998][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:12.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.000][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.006][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:13.008][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:13.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.010][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.017][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:13.018][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:13.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.020][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.026][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:13.028][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:13.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.030][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.036][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:13.038][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:13.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.040][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.046][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:13.048][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:13.049][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.050][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.056][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:13.058][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:13.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.060][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.066][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:13.068][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:13.069][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.070][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.076][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:13.078][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:13.079][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.080][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.086][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:13.088][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:13.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.090][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.096][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:13.098][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:13.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.100][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.106][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:13.108][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:13.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.110][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.117][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:13.118][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:13.119][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.121][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.127][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:13.128][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:13.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.131][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.137][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:13.138][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:13.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.141][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.148][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.comp-65124-content.xml".
biodb.DEBUG[2024-07-13 16:04:13.149][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-07-13 16:04:13.151][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-07-13 16:04:13.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:13.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:13.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:13.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:13.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:13.163][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:13.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:13.168][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:13.169][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:13.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.172][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.173][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:13.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:13.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.178][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:13.180][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:13.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.182][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.184][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:13.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:13.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.189][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:13.190][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:13.191][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.193][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.194][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:13.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:13.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.199][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:13.201][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:13.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.203][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:13.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:13.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.210][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:13.211][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:13.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.213][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.215][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:13.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:13.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.220][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:13.221][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:13.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.224][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.225][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:13.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:13.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.230][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:13.232][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:13.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.234][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.236][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:13.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:13.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.241][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:13.242][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:13.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.244][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.246][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:13.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:13.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.251][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:13.252][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:13.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.255][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.256][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:13.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:13.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.262][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:13.263][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:13.264][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.265][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.267][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:13.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:13.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.272][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:13.274][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:13.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.276][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.278][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:13.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:13.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.283][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:13.284][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:13.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.287][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:13.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:13.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.293][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:13.295][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:13.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.297][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.299][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:13.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:13.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.304][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:13.305][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:13.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.308][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.309][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:13.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:13.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.315][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-07-13 16:04:13.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:13.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:13.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:13.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:13.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:13.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.330][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-07-13 16:04:13.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:13.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.335][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:13.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:13.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:13.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:13.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.345][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-07-13 16:04:13.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:13.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:13.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:13.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:13.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:13.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.360][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-07-13 16:04:13.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:13.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:13.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:13.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:13.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:13.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.375][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-07-13 16:04:13.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:13.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.380][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:13.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:13.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.385][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:13.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:13.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.390][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:13.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:13.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.395][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:13.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:13.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.400][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:13.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:13.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:13.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:13.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.415][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:13.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:13.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.419][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:13.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:13.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:13.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:13.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:13.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:13.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:13.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:13.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:13.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:13.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:13.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:13.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:13.449][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 65124.
biodb.TRACE[2024-07-13 16:04:13.451][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:04:13.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:04:13.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.456][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:04:13.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:04:13.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.461][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:13.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:13.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.466][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:04:13.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:04:13.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.470][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:04:13.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:04:13.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.475][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-13 16:04:13.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-13 16:04:13.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.480][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-13 16:04:13.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-13 16:04:13.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:13.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:13.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.496][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:13.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:13.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.506][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:13.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:13.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.511][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:13.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:13.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.516][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:13.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:13.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.522][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:13.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:13.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.527][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:13.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:13.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.532][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:13.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:13.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.537][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:13.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:13.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.542][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:13.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:13.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.547][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:13.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:13.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:13.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:13.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:13.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:13.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:13.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:13.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.574][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:13.575][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:13.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.578][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:13.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:13.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.593][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:13.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:13.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.598][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:13.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:13.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.603][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:13.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:13.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.608][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:13.609][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:13.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.612][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.613][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:13.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:13.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.627][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:13.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:13.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.631][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.632][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:13.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:13.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.636][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.637][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:13.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:13.640][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.641][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.642][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:13.643][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:13.645][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.646][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.647][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:13.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:13.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.661][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:13.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:13.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.666][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:13.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:13.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.671][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:13.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:13.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.676][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:13.677][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:13.678][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.680][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.681][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:13.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:13.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.695][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:13.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:13.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.700][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:13.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:13.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.705][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:13.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:13.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.710][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:13.712][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:13.713][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.714][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.715][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:13.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:13.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.730][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:13.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:13.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.735][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:13.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:13.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.740][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:13.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:13.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.745][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:13.746][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:13.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.748][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.750][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:13.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:13.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.764][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:13.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:13.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.769][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:13.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:13.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.774][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:13.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:13.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.779][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:13.780][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:13.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.783][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.784][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:13.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:13.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.799][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:13.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:13.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.804][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:13.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:13.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:13.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:13.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.814][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:13.815][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:13.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.817][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:13.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:13.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.834][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:13.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:13.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.845][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:13.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:13.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.850][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:13.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:13.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.855][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:13.856][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:13.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.859][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.860][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:13.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:13.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.874][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:13.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:13.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.879][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:13.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:13.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:13.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:13.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.889][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:13.891][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:13.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.893][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.894][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:13.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:13.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:13.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:13.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:13.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:13.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:13.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:13.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.924][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:13.925][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:13.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.928][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:13.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:13.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.943][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:13.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:13.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.949][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:13.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:13.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.953][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:13.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:13.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.958][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:13.960][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:13.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.962][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.963][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:13.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:13.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.978][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:13.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:13.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:13.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:13.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.988][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:13.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:13.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.993][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:13.995][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:13.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:13.997][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:13.998][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:14.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:14.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:14.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:14.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.019][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:14.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:14.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.024][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:14.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:14.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.030][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:14.031][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:14.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.033][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:14.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:14.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.050][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:14.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:14.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.055][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:14.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:14.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.060][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:14.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:14.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.064][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:14.066][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:14.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.068][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.069][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:14.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:14.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.084][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:14.085][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:14.087][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.088][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.094][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:14.096][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:14.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.098][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.105][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:14.106][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:14.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.109][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.115][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:14.117][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:14.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.119][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.125][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:14.127][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:14.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.129][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.135][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:14.136][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:14.138][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.139][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.145][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:14.146][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:14.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.149][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.155][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:14.156][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:14.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.158][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.164][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:14.166][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:14.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.168][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.174][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:14.175][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:14.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.178][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.184][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:14.185][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:14.186][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.187][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.193][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:14.195][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:14.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.197][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.203][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:14.204][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:14.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.207][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.213][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:14.214][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:14.215][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.216][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.222][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:14.224][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:14.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.226][ef$get] fields variable is a list.
biodb.INFO [2024-07-13 16:04:14.236][biodb::testThat]
biodb.INFO [2024-07-13 16:04:14.237][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-07-13 16:04:14.239][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:04:14.240][biodb::testThat]
biodb.DEBUG[2024-07-13 16:04:14.242][private$loadEntries] Creating entries from ids [2]: "2, 65124".
biodb.DEBUG[2024-07-13 16:04:14.244][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-07-13 16:04:14.247][cch$loadFileContent] Trying to load 2 files from cache: [2]: "2, 65124".
biodb.TRACE[2024-07-13 16:04:14.250][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2024-07-13 16:04:14.252][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/65124.xml".
biodb.DEBUG[2024-07-13 16:04:14.254][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-07-13 16:04:14.255][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-07-13 16:04:14.257][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-07-13 16:04:14.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:14.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:14.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:14.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:14.268][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:14.269][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:14.270][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:14.273][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:14.275][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:14.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.277][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:14.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:14.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.284][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:14.285][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:14.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.287][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:14.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:14.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.294][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:14.295][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:14.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.303][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.305][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:14.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:14.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.310][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:14.311][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:14.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.314][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:14.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:14.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.320][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:14.321][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:14.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.324][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:14.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:14.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.330][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:14.331][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:14.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.333][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.335][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:14.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:14.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.340][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:14.341][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:14.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.343][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.345][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:14.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:14.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.350][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:14.351][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:14.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.353][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.355][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:14.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:14.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.360][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:14.361][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:14.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.363][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.365][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:14.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:14.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.370][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:14.371][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:14.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.374][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.375][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:14.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:14.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.380][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:14.381][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:14.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.383][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.385][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:14.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:14.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.390][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:14.391][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:14.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.393][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.395][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:14.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:14.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.400][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:14.401][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:14.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.403][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.405][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:14.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:14.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.410][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:14.411][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:14.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.413][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.415][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:14.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:14.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.420][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-07-13 16:04:14.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:14.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:14.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:14.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:14.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:14.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.435][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-07-13 16:04:14.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:14.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:14.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:14.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:14.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:14.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.449][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-07-13 16:04:14.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:14.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.454][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:14.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:14.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:14.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:14.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.464][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-07-13 16:04:14.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:14.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:14.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:14.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:14.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:14.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.479][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-07-13 16:04:14.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:14.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:14.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:14.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:14.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:14.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.494][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:14.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:14.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:14.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:14.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.504][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:14.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:14.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:14.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:14.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.513][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:14.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:14.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.518][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:14.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:14.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.523][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:14.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:14.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.528][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:14.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:14.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:14.533][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:14.535][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:14.536][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:14.542][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:14.543][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:14.544][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:14.545][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:14.548][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:14.549][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:14.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.552][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:14.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:14.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.558][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:14.560][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:14.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.562][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.564][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:14.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:14.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.569][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:14.570][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:14.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.572][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:14.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:14.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.579][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:14.580][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:14.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.582][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:14.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:14.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.589][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:14.590][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:14.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.593][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:14.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:14.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.599][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:14.601][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:14.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.603][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.604][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:14.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:14.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.609][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:14.611][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:14.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.613][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.615][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:14.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:14.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.620][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:14.621][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:14.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.623][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.625][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:14.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:14.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.630][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:14.631][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:14.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.634][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:14.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:14.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.640][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:14.641][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:14.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.644][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:14.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:14.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.650][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:14.652][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:14.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.654][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.656][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:14.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:14.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.661][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:14.662][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:14.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.664][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:14.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:14.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.671][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:14.672][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:14.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.675][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.676][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:14.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:14.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.681][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:14.683][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:14.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.685][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.687][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:14.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:14.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.692][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-07-13 16:04:14.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:14.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.697][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:14.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:14.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:14.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:14.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.707][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-07-13 16:04:14.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:14.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.712][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:14.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:14.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:14.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:14.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.722][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-07-13 16:04:14.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:14.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.727][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:14.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:14.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:14.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:14.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.741][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-07-13 16:04:14.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:14.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.746][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:14.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:14.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.750][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:14.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:14.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.755][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-07-13 16:04:14.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:14.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:14.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:14.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.765][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:14.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:14.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.770][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:14.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:14.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.775][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:14.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:14.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.779][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:14.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:14.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.784][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:14.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:14.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.789][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:14.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:14.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.794][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:14.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:14.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.799][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:14.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:14.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:14.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:14.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.809][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:14.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:14.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.813][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:14.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:14.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.818][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:14.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:14.821][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.822][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:14.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:14.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:14.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:14.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:14.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:14.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:14.837][self$createEntryFromContent] Accession numbers: 2, 65124.
biodb.TRACE[2024-07-13 16:04:14.839][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-07-13 16:04:14.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-07-13 16:04:14.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.844][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-07-13 16:04:14.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-07-13 16:04:14.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.848][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-07-13 16:04:14.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-07-13 16:04:14.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.859][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-07-13 16:04:14.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-07-13 16:04:14.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.864][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-07-13 16:04:14.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-07-13 16:04:14.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.869][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-07-13 16:04:14.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-07-13 16:04:14.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-13 16:04:14.882][biodb::testThat]
biodb.INFO [2024-07-13 16:04:14.884][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-07-13 16:04:14.885][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:04:14.886][biodb::testThat]
biodb.TRACE[2024-07-13 16:04:14.890][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:14.891][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:14.892][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.893][ef$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:14.895][function(conn, opt)] Testing searchForEntries() with entry "2" and field "name".
biodb.TRACE[2024-07-13 16:04:14.910][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:14.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:14.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.915][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:14.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:14.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.920][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:14.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:14.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:14.928][function(conn, opt)] With value "(2-acetyloxy-3-carboxypropyl)-trimethylazanium".
biodb.DEBUG[2024-07-13 16:04:14.935][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-07-13 16:04:14.940][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:14.941][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-07-13 16:04:14.943][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:14.945][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2024-07-13 16:04:14.947][function(conn, opt)] With found IDs [5]: "87229113, 25217148, 450343, 450342, 2".
biodb.TRACE[2024-07-13 16:04:14.962][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:14.963][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:14.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.965][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.967][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:14.968][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:14.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.970][ef$get] fields variable is a list.
biodb.INFO [2024-07-13 16:04:14.975][biodb::testThat]
biodb.INFO [2024-07-13 16:04:14.977][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-07-13 16:04:14.978][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:04:14.979][biodb::testThat]
biodb.TRACE[2024-07-13 16:04:14.992][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:14.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:14.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:14.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:14.997][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:14.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:15.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:15.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:15.002][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:15.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:15.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:15.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:15.044][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-07-13 16:04:15.049][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:15.050][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-07-13 16:04:15.052][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:15.054][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.INFO [2024-07-13 16:04:15.074][biodb::testThat]
biodb.INFO [2024-07-13 16:04:15.075][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-07-13 16:04:15.076][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:04:15.077][biodb::testThat]
biodb.TRACE[2024-07-13 16:04:15.089][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:04:15.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:04:15.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:15.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:15.094][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:04:15.096][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:04:15.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:15.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:15.099][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:15.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:15.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:15.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:15.104][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:04:15.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:04:15.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:15.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:15.109][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:04:15.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:04:15.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:15.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:15.114][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-13 16:04:15.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-13 16:04:15.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:15.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:15.119][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-13 16:04:15.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-13 16:04:15.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:15.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:15.126][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:04:15.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:04:15.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:15.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:15.131][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:04:15.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:04:15.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:15.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:15.136][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:15.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:15.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:15.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:15.141][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:04:15.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:04:15.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:15.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:15.145][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:04:15.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:04:15.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:15.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:15.150][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-13 16:04:15.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-13 16:04:15.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:15.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:15.156][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-13 16:04:15.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-13 16:04:15.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:15.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-13 16:04:15.168][biodb::testThat]
biodb.INFO [2024-07-13 16:04:15.169][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-07-13 16:04:15.170][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:04:15.171][biodb::testThat]
biodb.INFO [2024-07-13 16:04:15.187][biodb::testThat]
biodb.INFO [2024-07-13 16:04:15.189][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-07-13 16:04:15.190][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:04:15.191][biodb::testThat]
biodb.INFO [2024-07-13 16:04:15.202][biodb::testThat]
biodb.INFO [2024-07-13 16:04:15.204][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2024-07-13 16:04:15.205][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:04:15.206][biodb::testThat]
biodb.DEBUG[2024-07-13 16:04:15.211][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/compound/2".
biodb.DEBUG[2024-07-13 16:04:15.341][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/compound/2.
biodb.INFO [2024-07-13 16:04:15.476][biodb::testThat]
biodb.INFO [2024-07-13 16:04:15.477][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2024-07-13 16:04:15.479][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:04:15.480][biodb::testThat]
biodb.DEBUG[2024-07-13 16:04:15.595][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?cid=2&t=l.
biodb.TRACE[2024-07-13 16:04:15.689][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:15.690][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:15.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:15.692][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:15.694][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:15.695][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:15.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:15.697][ef$get] fields variable is a list.
biodb.INFO [2024-07-13 16:04:15.699][biodb::testThat]
biodb.INFO [2024-07-13 16:04:15.701][biodb::testThat] Running test function test.searchCompound (" We can search for a compound ").
biodb.INFO [2024-07-13 16:04:15.702][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:04:15.703][biodb::testThat]
biodb.TRACE[2024-07-13 16:04:15.717][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:15.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:15.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:15.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:15.722][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:15.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:15.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:15.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:15.727][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:15.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:15.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:15.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:15.853][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-07-13 16:04:15.857][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:15.859][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-07-13 16:04:15.860][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:15.862][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.DEBUG[2024-07-13 16:04:15.958][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName]&retmax=10".
biodb.DEBUG[2024-07-13 16:04:15.962][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:15.964][cch$loadFileContent] Trying to load 1 files from cache: [1]: "0c7e343368bb974cc0f019187ff4a141".
biodb.TRACE[2024-07-13 16:04:15.966][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:15.967][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/0c7e343368bb974cc0f019187ff4a141.content".
biodb.TRACE[2024-07-13 16:04:15.985][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-13 16:04:15.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-13 16:04:15.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:15.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:15.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:15.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:15.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:16.001][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:16.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:16.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:16.007][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:16.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:16.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:16.012][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:16.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:16.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:16.017][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:16.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:16.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:16.033][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:16.037][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:16.040][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-07-13 16:04:16.041][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:16.043][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-07-13 16:04:16.075][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-07-13 16:04:16.079][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:16.081][cch$loadFileContent] Trying to load 1 files from cache: [1]: "43af01c58cfaf2fe3448c11004a21986".
biodb.TRACE[2024-07-13 16:04:16.082][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:16.085][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/43af01c58cfaf2fe3448c11004a21986.content".
biodb.DEBUG[2024-07-13 16:04:16.548][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.25[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-07-13 16:04:16.552][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:16.554][cch$loadFileContent] Trying to load 1 files from cache: [1]: "5a651e56a091cb06291b388106735d55".
biodb.TRACE[2024-07-13 16:04:16.556][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:16.557][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/5a651e56a091cb06291b388106735d55.content".
biodb.DEBUG[2024-07-13 16:04:16.584][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.23:204.27[MolecularWeight]&retmax=1000000".
biodb.DEBUG[2024-07-13 16:04:16.588][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:16.590][cch$loadFileContent] Trying to load 1 files from cache: [1]: "d3d0da2755d093596dae584b7698bc73".
biodb.TRACE[2024-07-13 16:04:16.592][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:16.594][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/d3d0da2755d093596dae584b7698bc73.content".
biodb.TRACE[2024-07-13 16:04:16.614][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:16.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:16.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:16.619][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:16.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:16.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:16.624][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:16.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:16.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:16.629][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:16.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:16.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:16.634][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:16.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:16.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:16.646][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:16.650][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:16.652][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1384af38a786fc6768cd7f1e796d96ab".
biodb.TRACE[2024-07-13 16:04:16.653][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:16.655][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1384af38a786fc6768cd7f1e796d96ab.content".
biodb.DEBUG[2024-07-13 16:04:16.673][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-07-13 16:04:16.677][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:16.679][cch$loadFileContent] Trying to load 1 files from cache: [1]: "983d3a3af3901d23b5d919d379c6bd32".
biodb.TRACE[2024-07-13 16:04:16.680][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:16.682][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/983d3a3af3901d23b5d919d379c6bd32.content".
biodb.DEBUG[2024-07-13 16:04:16.703][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358307[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-07-13 16:04:16.708][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:16.709][cch$loadFileContent] Trying to load 1 files from cache: [1]: "b9a9be2efcff8c77fef3b8a87f25b444".
biodb.TRACE[2024-07-13 16:04:16.711][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:16.713][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/b9a9be2efcff8c77fef3b8a87f25b444.content".
biodb.DEBUG[2024-07-13 16:04:16.739][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term="(2-acetyloxy-3-carboxypropyl)-trimethylazanium"[IUPACName] AND 204.12358305:204.12358309[MonoisotopicMass]&retmax=1000000".
biodb.DEBUG[2024-07-13 16:04:16.743][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:16.745][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6d4e46c6f0a021fc6e92911d60537192".
biodb.TRACE[2024-07-13 16:04:16.747][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:16.748][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6d4e46c6f0a021fc6e92911d60537192.content".
biodb.TRACE[2024-07-13 16:04:16.769][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-07-13 16:04:16.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-07-13 16:04:16.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-13 16:04:16.784][biodb::testThat]
biodb.INFO [2024-07-13 16:04:16.785][biodb::testThat] Running test function test_annotateMzValues_input_vector (" annotateMzValues() accepts a single vector. ").
biodb.INFO [2024-07-13 16:04:16.787][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:04:16.788][biodb::testThat]
biodb.TRACE[2024-07-13 16:04:16.791][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-13 16:04:16.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-13 16:04:16.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:16.796][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-13 16:04:16.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-13 16:04:16.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:16.801][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:16.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:16.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:16.806][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:16.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:16.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:16.811][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:16.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:16.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:16.816][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:16.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:16.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:16.821][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:16.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:16.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:16.826][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:16.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:16.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:16.832][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:16.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:16.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:16.837][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:16.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:16.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:16.854][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:16.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:16.857][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:16.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:16.864][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:16.865][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:16.866][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:16.874][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:16.878][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:16.879][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-07-13 16:04:16.881][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:16.883][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-07-13 16:04:16.885][private$loadEntries] Creating entries from ids [3]: "171632701, 171615080, 171615005".
biodb.DEBUG[2024-07-13 16:04:16.886][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-07-13 16:04:16.888][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171632701, 171615080, 171615005".
biodb.TRACE[2024-07-13 16:04:16.889][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-07-13 16:04:16.893][loadFileContents] Loaded 3 files from cache: [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171632701.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171615080.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171615005.xml".
biodb.DEBUG[2024-07-13 16:04:16.894][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-07-13 16:04:16.895][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-07-13 16:04:16.897][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-07-13 16:04:16.899][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:16.900][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:16.901][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:16.907][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:16.908][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:16.909][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:16.910][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:16.914][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:16.915][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:16.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.917][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:16.919][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:16.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:16.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:16.924][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:16.925][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:16.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.927][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:16.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:16.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:16.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:16.934][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:16.935][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:16.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.938][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:16.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:16.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:16.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:16.944][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:16.946][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:16.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.948][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:16.949][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:16.951][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:16.952][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:16.954][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:16.956][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:16.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.958][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:16.960][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:16.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:16.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:16.965][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:16.966][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:16.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.968][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:16.970][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:16.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:16.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:16.975][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:16.976][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:16.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.979][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:16.980][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:16.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:16.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:16.985][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:16.987][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:16.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.989][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:16.991][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:16.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:16.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:16.996][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:16.997][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:16.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:16.999][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.001][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:17.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:17.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.006][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:17.008][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:17.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.010][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.012][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:17.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:17.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.017][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:17.018][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:17.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.020][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.022][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:17.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:17.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.027][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:17.029][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:17.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.031][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:17.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:17.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.038][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:17.039][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:17.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.041][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.043][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:17.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:17.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.048][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:17.049][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:17.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.052][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.053][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:17.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:17.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.059][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-07-13 16:04:17.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:17.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:17.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:17.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.069][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:17.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:17.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.074][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-07-13 16:04:17.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:17.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.079][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:17.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:17.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.084][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:17.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:17.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.088][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.089][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-07-13 16:04:17.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:17.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:17.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:17.097][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.098][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.099][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:17.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:17.102][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.104][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-07-13 16:04:17.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:17.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:17.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:17.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.114][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:17.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:17.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.119][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-07-13 16:04:17.121][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:17.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.124][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:17.126][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:17.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:17.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:17.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.134][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:17.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:17.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.139][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.144][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:17.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:17.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.154][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.159][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:17.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:17.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.165][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:17.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:17.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.169][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:17.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:17.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:17.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:17.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:17.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:17.183][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:17.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:17.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:17.186][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:17.190][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:17.191][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:17.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.193][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.195][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:17.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:17.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.200][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:17.201][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:17.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.204][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.205][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:17.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:17.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.210][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:17.212][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:17.213][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.214][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.216][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:17.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:17.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.221][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:17.222][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:17.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.224][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.226][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:17.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:17.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.231][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:17.233][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:17.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.235][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.237][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:17.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:17.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.242][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:17.243][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:17.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.245][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.247][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:17.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:17.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.252][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:17.254][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:17.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.256][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.258][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:17.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:17.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.268][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:17.270][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:17.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.272][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.273][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:17.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:17.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.278][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:17.280][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:17.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.282][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.284][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:17.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:17.286][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.289][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:17.290][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:17.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.292][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.294][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:17.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:17.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.299][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:17.300][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:17.301][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.302][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.304][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:17.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:17.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.309][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:17.310][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:17.312][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.313][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.314][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:17.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:17.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.319][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:17.321][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:17.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.323][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.325][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:17.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:17.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.330][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:17.331][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:17.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.333][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.335][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:17.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:17.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.340][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-07-13 16:04:17.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:17.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:17.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:17.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:17.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:17.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.355][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-07-13 16:04:17.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:17.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.360][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:17.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:17.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:17.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:17.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.370][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-07-13 16:04:17.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:17.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.375][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:17.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:17.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:17.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:17.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.384][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-07-13 16:04:17.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:17.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:17.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:17.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:17.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:17.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.399][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-07-13 16:04:17.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:17.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.404][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:17.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:17.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:17.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:17.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.414][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:17.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:17.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.424][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:17.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:17.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.434][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:17.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:17.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:17.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:17.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:17.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:17.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:17.454][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:17.455][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:17.456][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:17.462][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:17.464][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:17.465][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:17.466][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:17.469][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:17.470][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:17.472][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.473][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:17.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:17.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.479][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:17.481][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:17.482][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.483][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.485][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:17.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:17.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.490][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:17.491][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:17.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.494][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.495][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:17.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:17.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.500][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:17.502][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:17.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.504][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.505][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:17.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:17.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.510][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:17.512][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:17.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.514][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.515][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:17.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:17.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.520][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:17.522][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:17.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.524][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.525][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:17.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:17.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.530][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:17.532][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:17.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.534][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.536][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:17.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:17.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.541][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:17.542][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:17.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.544][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.546][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:17.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:17.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.551][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:17.552][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:17.553][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.554][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.556][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:17.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:17.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.561][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:17.562][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:17.563][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.564][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.566][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:17.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:17.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.571][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:17.572][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:17.573][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.574][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.576][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:17.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:17.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.581][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:17.582][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:17.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.585][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.586][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:17.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:17.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.591][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:17.593][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:17.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.595][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.597][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:17.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:17.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.602][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:17.603][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:17.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.605][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.607][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:17.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:17.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.612][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-07-13 16:04:17.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:17.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:17.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:17.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.622][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:17.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:17.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.627][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-07-13 16:04:17.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:17.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.632][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:17.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:17.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.637][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:17.638][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:17.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.642][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-07-13 16:04:17.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:17.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.647][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:17.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:17.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.651][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:17.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:17.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.656][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-07-13 16:04:17.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:17.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.667][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:17.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:17.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:17.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:17.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.677][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-07-13 16:04:17.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:17.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:17.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:17.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.686][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:17.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:17.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.691][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:17.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:17.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.696][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.701][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.706][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:17.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:17.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.716][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:17.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:17.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.721][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:17.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:17.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.726][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:17.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:17.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.731][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:17.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:17.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.736][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:17.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:17.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.740][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:17.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:17.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.745][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:17.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:17.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.750][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:17.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:17.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.755][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:17.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:17.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.760][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:17.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:17.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.765][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:17.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:17.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.770][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:17.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:17.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:17.775][self$createEntryFromContent] Accession numbers: 171632701, 171615080, 171615005.
biodb.DEBUG[2024-07-13 16:04:17.776][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:17.778][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:17.779][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:17.780][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:17.786][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:17.787][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:17.788][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:17.789][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:17.791][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.796][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.801][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:17.802][private$selectFields]
biodb.TRACE[2024-07-13 16:04:17.803][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:17.804][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:17.805][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:17.807][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.808][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.810][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.811][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.813][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.815][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.816][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:17.818][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:17.819][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.820][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.822][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.824][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:17.825][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.830][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.835][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.852][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171632701].
biodb.DEBUG[2024-07-13 16:04:17.854][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:17.855][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:17.856][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:17.862][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:17.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:17.864][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:17.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:17.867][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.872][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.876][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:17.878][private$selectFields]
biodb.TRACE[2024-07-13 16:04:17.879][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:17.880][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:17.881][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:17.882][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.884][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.886][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.887][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.889][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.891][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.892][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:17.893][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:17.895][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.896][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.898][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.899][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:17.901][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.906][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.911][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.916][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171615080].
biodb.DEBUG[2024-07-13 16:04:17.917][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:17.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:17.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:17.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:17.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:17.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:17.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:17.930][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.935][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.940][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:17.941][private$selectFields]
biodb.TRACE[2024-07-13 16:04:17.942][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:17.943][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:17.945][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:17.946][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.947][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.950][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.951][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.952][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.953][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.954][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.956][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:17.957][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:17.958][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.959][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.962][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.963][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:17.964][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.974][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:17.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:17.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:17.979][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171615005].
biodb.DEBUG[2024-07-13 16:04:17.980][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:17.982][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-07-13 16:04:17.985][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:17.986][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:17.987][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:17.994][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:17.995][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:17.996][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:17.997][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:18.006][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:18.010][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-13 16:04:18.011][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-13 16:04:18.014][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-07-13 16:04:18.123][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-07-13 16:04:18.124][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-07-13 16:04:18.126][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-07-13 16:04:18.128][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-07-13 16:04:18.230][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-07-13 16:04:18.232][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content"
biodb.TRACE[2024-07-13 16:04:18.238][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.request"
biodb.DEBUG[2024-07-13 16:04:18.241][private$loadEntries] Creating entries from ids [3]: "171699478, 171652018, 171652005".
biodb.DEBUG[2024-07-13 16:04:18.242][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-07-13 16:04:18.244][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171699478, 171652018, 171652005".
biodb.TRACE[2024-07-13 16:04:18.245][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-07-13 16:04:18.247][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-13 16:04:18.248][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-07-13 16:04:18.250][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-07-13 16:04:18.251][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-13 16:04:18.252][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-07-13 16:04:18.253][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-07-13 16:04:18.256][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171699478,171652018,171652005/XML".
biodb.DEBUG[2024-07-13 16:04:18.259][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-13 16:04:18.260][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-13 16:04:18.262][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171699478,171652018,171652005/XML".
biodb.TRACE[2024-07-13 16:04:18.414][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171699478,171652018,171652005/XML).
biodb.TRACE[2024-07-13 16:04:18.577][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171699478.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171652018.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171652005.xml"
biodb.DEBUG[2024-07-13 16:04:18.585][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-13 16:04:18.586][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-07-13 16:04:18.588][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-07-13 16:04:18.590][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:18.591][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:18.592][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:18.598][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:18.599][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:18.600][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:18.601][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:18.604][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:18.606][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:18.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.608][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.610][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:18.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:18.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.615][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:18.616][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:18.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.618][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:18.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:18.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.625][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:18.626][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:18.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.629][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.630][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:18.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:18.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.635][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:18.637][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:18.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.639][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.641][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:18.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:18.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.646][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:18.647][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:18.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.649][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.651][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:18.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:18.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.656][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:18.657][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:18.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.660][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.661][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:18.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:18.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.666][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:18.668][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:18.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.670][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.672][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:18.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:18.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.677][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:18.678][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:18.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.680][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.682][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:18.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:18.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.687][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:18.688][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:18.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.691][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.692][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:18.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:18.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.697][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:18.699][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:18.700][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.701][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.703][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:18.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:18.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.708][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:18.709][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:18.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.711][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.713][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:18.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:18.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.718][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:18.719][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:18.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.722][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.723][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:18.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:18.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.727][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.729][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:18.730][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:18.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.732][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.734][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:18.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:18.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.739][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:18.741][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:18.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.743][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.745][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:18.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:18.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.750][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-07-13 16:04:18.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:18.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.755][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:18.756][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:18.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.760][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:18.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:18.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.765][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-07-13 16:04:18.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:18.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.770][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:18.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:18.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.775][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:18.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:18.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.780][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-07-13 16:04:18.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:18.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.785][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:18.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:18.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.790][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:18.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:18.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.795][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-07-13 16:04:18.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:18.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.801][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:18.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:18.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.806][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:18.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:18.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.811][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-07-13 16:04:18.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:18.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.816][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:18.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:18.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:18.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:18.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.826][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:18.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:18.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.831][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:18.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:18.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.836][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:18.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:18.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.840][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.841][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:18.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:18.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.846][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:18.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:18.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.852][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:18.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:18.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.857][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:18.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:18.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.862][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:18.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:18.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:18.867][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:18.868][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:18.869][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:18.875][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:18.877][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:18.878][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:18.879][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:18.882][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:18.884][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:18.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.886][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.887][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:18.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:18.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.893][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:18.894][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:18.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.896][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.898][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:18.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:18.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.903][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:18.905][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:18.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.907][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:18.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:18.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.914][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:18.915][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:18.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.918][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:18.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:18.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.925][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:18.926][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:18.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.928][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:18.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:18.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.935][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:18.937][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:18.938][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.939][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.941][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:18.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:18.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.946][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:18.948][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:18.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.950][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.952][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:18.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:18.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.957][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:18.959][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:18.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.961][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.963][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:18.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:18.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.968][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:18.970][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:18.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.972][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.974][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:18.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:18.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.979][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:18.980][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:18.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.983][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.984][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:18.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:18.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:18.996][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:18.997][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:18.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:18.999][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.001][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:19.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:19.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.006][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:19.008][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:19.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.010][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.011][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:19.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:19.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.017][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:19.018][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:19.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.020][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.022][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:19.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:19.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.027][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:19.028][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:19.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.031][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.032][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:19.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:19.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.038][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-07-13 16:04:19.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:19.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.043][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:19.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:19.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:19.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:19.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.053][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-07-13 16:04:19.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:19.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:19.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:19.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:19.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:19.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.068][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-07-13 16:04:19.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:19.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:19.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:19.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:19.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:19.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.084][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-07-13 16:04:19.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:19.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.089][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:19.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:19.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.094][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:19.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:19.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.099][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-07-13 16:04:19.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:19.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.104][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:19.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:19.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.109][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:19.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:19.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.114][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:19.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:19.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.119][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.124][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:19.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:19.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.134][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:19.140][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:19.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:19.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:19.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.149][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:19.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:19.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:19.154][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:19.155][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:19.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:19.163][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:19.164][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:19.165][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:19.166][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:19.170][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:19.171][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:19.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.174][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.175][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:19.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:19.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.181][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:19.182][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:19.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.184][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:19.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:19.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.191][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:19.192][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:19.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.195][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.196][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:19.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:19.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.201][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:19.203][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:19.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.205][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.207][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:19.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:19.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.212][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:19.213][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:19.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.216][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.217][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:19.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:19.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.222][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:19.224][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:19.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.226][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.228][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:19.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:19.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.233][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:19.234][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:19.235][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.237][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.238][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:19.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:19.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.243][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:19.245][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:19.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.247][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.249][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:19.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:19.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.254][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:19.255][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:19.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.258][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:19.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:19.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.264][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:19.266][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:19.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.268][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.270][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:19.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:19.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.275][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:19.276][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:19.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.278][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.280][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:19.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:19.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.285][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:19.287][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:19.288][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.289][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.291][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:19.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:19.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.296][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:19.297][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:19.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.300][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.301][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:19.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:19.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.306][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:19.308][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:19.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.310][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.312][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:19.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:19.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.317][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-07-13 16:04:19.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:19.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.322][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:19.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:19.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.327][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:19.328][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:19.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.331][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.332][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-07-13 16:04:19.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:19.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.337][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:19.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:19.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.341][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.342][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:19.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:19.345][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.346][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.347][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-07-13 16:04:19.349][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:19.350][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.351][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.353][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:19.354][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:19.355][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.358][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:19.359][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:19.360][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.361][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.363][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-07-13 16:04:19.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:19.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.368][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:19.369][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:19.370][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.373][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:19.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:19.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.378][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-07-13 16:04:19.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:19.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.383][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:19.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:19.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:19.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:19.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.393][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:19.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:19.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.404][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:19.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:19.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.419][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.424][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:19.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:19.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.429][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:19.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:19.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.434][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:19.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:19.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.439][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:19.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:19.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.444][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:19.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:19.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:19.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:19.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.454][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:19.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:19.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:19.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:19.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:19.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:19.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:19.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:19.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:19.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:19.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:19.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:19.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:19.484][self$createEntryFromContent] Accession numbers: 171699478, 171652018, 171652005.
biodb.DEBUG[2024-07-13 16:04:19.518][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:19.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:19.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:19.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:19.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:19.562][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:19.563][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:19.564][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:19.565][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.570][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.575][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:19.576][private$selectFields]
biodb.TRACE[2024-07-13 16:04:19.578][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:19.579][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:19.580][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:19.581][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.582][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.584][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.585][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.586][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.587][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.590][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.591][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:19.592][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:19.593][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.595][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.597][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.598][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:19.600][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.605][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.610][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.615][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171699478].
biodb.DEBUG[2024-07-13 16:04:19.616][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:19.617][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:19.618][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:19.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:19.626][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:19.627][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:19.628][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:19.629][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.639][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:19.640][private$selectFields]
biodb.TRACE[2024-07-13 16:04:19.642][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:19.643][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:19.644][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:19.645][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.647][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.649][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.650][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.652][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.654][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.655][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:19.656][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:19.658][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.659][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.661][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.662][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:19.664][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.669][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.674][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.679][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171652018].
biodb.DEBUG[2024-07-13 16:04:19.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:19.682][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:19.683][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:19.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:19.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:19.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:19.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:19.694][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.699][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.704][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:19.705][private$selectFields]
biodb.TRACE[2024-07-13 16:04:19.706][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:19.707][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:19.708][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:19.710][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.711][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.713][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.715][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.716][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.718][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.719][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:19.721][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:19.722][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.723][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.726][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.727][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:19.728][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.732][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.733][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.737][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:19.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.742][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.743][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171652005].
biodb.DEBUG[2024-07-13 16:04:19.745][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:19.746][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-13 16:04:19.756][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:19.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:19.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.761][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:19.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:19.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.766][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:19.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:19.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.771][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:19.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:19.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.776][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:19.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:19.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.781][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:19.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:19.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.786][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:19.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:19.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.797][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:19.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:19.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:19.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:19.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:19.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:19.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:19.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:19.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:19.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:19.895][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:19.900][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:19.901][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-07-13 16:04:19.903][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:19.905][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-07-13 16:04:19.907][private$loadEntries] Creating entries from ids [3]: "171715183, 171715181, 171699432".
biodb.DEBUG[2024-07-13 16:04:19.908][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-07-13 16:04:19.910][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171715183, 171715181, 171699432".
biodb.TRACE[2024-07-13 16:04:19.912][cch$loadFileContent] file.exist = [3]: "TRUE, TRUE, TRUE".
biodb.TRACE[2024-07-13 16:04:19.915][loadFileContents] Loaded 3 files from cache: [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171715183.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171715181.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171699432.xml".
biodb.DEBUG[2024-07-13 16:04:19.916][conn$getEntryContent] 3 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-07-13 16:04:19.918][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-07-13 16:04:19.919][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-07-13 16:04:19.921][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:19.922][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:19.923][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:19.929][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:19.931][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:19.932][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:19.933][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:19.936][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:19.937][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:19.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.940][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.941][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:19.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:19.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.946][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:19.948][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:19.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.950][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.952][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:19.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:19.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.957][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:19.958][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:19.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.961][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:19.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:19.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.967][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:19.969][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:19.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.971][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.973][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:19.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:19.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.978][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:19.979][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:19.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.981][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.983][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:19.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:19.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.988][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:19.989][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:19.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.992][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.993][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:19.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:19.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:19.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:19.998][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:20.000][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:20.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.002][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.004][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:20.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:20.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.009][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:20.010][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:20.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.012][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.014][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:20.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:20.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.019][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:20.020][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:20.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.023][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.024][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:20.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:20.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.030][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:20.031][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:20.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.033][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.035][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:20.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:20.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.040][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:20.041][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:20.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.044][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.045][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:20.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:20.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.050][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:20.052][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:20.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.054][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:20.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:20.058][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.061][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:20.062][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:20.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.064][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.066][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:20.067][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:20.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.071][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:20.073][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:20.074][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.075][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.077][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:20.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:20.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.082][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-07-13 16:04:20.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:20.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:20.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:20.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.092][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:20.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:20.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.097][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-07-13 16:04:20.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:20.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.102][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:20.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:20.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.107][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:20.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:20.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.112][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-07-13 16:04:20.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:20.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.117][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:20.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:20.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.122][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:20.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:20.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.127][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-07-13 16:04:20.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:20.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.132][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:20.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:20.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:20.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:20.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.141][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-07-13 16:04:20.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:20.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:20.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:20.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:20.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:20.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.156][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:20.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:20.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.161][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.166][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.171][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:20.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:20.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.176][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.181][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:20.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:20.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:20.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:20.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:20.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:20.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:20.203][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:20.204][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:20.205][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:20.211][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:20.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:20.213][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:20.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:20.217][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:20.219][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:20.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.221][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:20.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:20.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.228][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:20.229][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:20.230][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.231][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:20.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:20.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.238][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:20.239][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:20.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.242][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.243][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:20.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:20.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.249][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:20.250][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:20.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.252][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.254][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:20.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:20.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.259][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:20.260][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:20.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.263][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:20.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:20.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.270][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:20.271][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:20.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.274][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:20.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:20.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.281][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:20.282][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:20.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.284][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.286][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:20.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:20.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.291][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:20.292][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:20.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.295][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.296][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:20.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:20.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.301][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:20.303][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:20.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.305][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.307][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:20.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:20.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.312][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:20.313][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:20.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.316][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.317][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:20.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:20.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.322][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:20.324][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:20.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.326][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.328][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:20.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:20.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.333][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:20.334][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:20.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.337][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.338][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:20.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:20.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.343][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:20.345][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:20.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.347][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.349][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:20.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:20.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.354][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:20.355][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:20.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.357][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:20.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:20.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.364][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-07-13 16:04:20.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:20.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:20.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:20.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.374][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:20.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:20.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.379][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-07-13 16:04:20.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:20.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:20.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:20.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:20.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:20.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.394][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-07-13 16:04:20.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:20.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.399][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:20.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:20.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.404][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:20.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:20.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.409][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-07-13 16:04:20.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:20.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.414][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:20.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:20.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.420][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:20.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:20.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.425][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-07-13 16:04:20.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:20.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:20.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:20.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:20.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:20.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.440][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:20.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:20.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:20.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:20.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.460][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.465][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:20.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:20.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.470][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:20.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:20.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.475][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:20.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:20.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:20.480][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:20.481][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:20.482][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:20.489][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:20.490][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:20.491][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:20.492][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:20.495][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:20.497][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:20.498][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.499][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.500][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:20.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:20.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.505][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:20.507][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:20.508][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.509][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:20.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:20.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.516][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:20.517][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:20.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.519][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:20.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:20.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.526][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:20.527][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:20.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.530][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.531][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:20.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:20.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.537][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:20.538][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:20.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.540][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:20.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:20.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.547][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:20.548][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:20.549][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.551][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.552][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:20.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:20.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.557][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:20.559][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:20.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.561][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.563][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:20.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:20.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.568][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:20.569][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:20.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.572][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.573][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:20.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:20.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.579][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:20.580][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:20.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.582][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.584][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:20.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:20.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.595][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:20.597][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:20.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.599][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.600][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:20.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:20.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.605][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:20.607][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:20.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.609][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.611][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:20.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:20.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.616][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:20.617][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:20.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.619][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:20.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:20.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.626][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:20.627][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:20.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.630][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.631][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:20.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:20.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.636][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:20.638][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:20.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.640][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.642][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:20.643][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:20.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.647][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-07-13 16:04:20.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:20.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.652][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:20.653][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:20.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.657][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:20.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:20.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.662][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-07-13 16:04:20.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:20.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.667][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:20.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:20.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:20.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:20.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.677][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-07-13 16:04:20.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:20.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.682][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:20.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:20.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.687][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:20.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:20.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.692][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-07-13 16:04:20.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:20.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.697][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:20.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:20.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.702][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:20.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:20.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.707][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-07-13 16:04:20.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:20.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.712][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:20.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:20.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.717][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:20.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:20.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.722][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:20.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:20.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.727][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.732][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.737][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:20.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:20.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.742][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.747][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:20.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:20.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.752][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:20.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:20.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.757][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:20.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:20.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.762][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:20.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:20.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.767][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:20.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:20.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.772][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:20.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:20.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:20.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:20.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.782][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:20.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:20.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.787][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:20.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:20.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:20.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:20.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:20.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:20.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.803][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:20.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:20.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:20.808][self$createEntryFromContent] Accession numbers: 171715183, 171715181, 171699432.
biodb.DEBUG[2024-07-13 16:04:20.809][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:20.811][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:20.813][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:20.814][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:20.820][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:20.821][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:20.822][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:20.824][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:20.825][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.830][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.835][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:20.836][private$selectFields]
biodb.TRACE[2024-07-13 16:04:20.837][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:20.839][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:20.840][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:20.841][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.842][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.845][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.846][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.847][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.850][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.851][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:20.852][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:20.853][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.855][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.857][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.858][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:20.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.864][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.869][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.875][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171715183].
biodb.DEBUG[2024-07-13 16:04:20.876][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:20.877][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:20.878][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:20.884][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:20.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:20.886][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:20.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:20.889][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.894][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.899][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:20.900][private$selectFields]
biodb.TRACE[2024-07-13 16:04:20.901][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:20.902][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:20.903][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:20.905][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.906][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.907][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.908][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.910][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.911][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.912][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.913][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.915][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:20.916][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:20.917][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.918][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.921][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.922][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:20.923][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.928][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.933][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.938][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171715181].
biodb.DEBUG[2024-07-13 16:04:20.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:20.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:20.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:20.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:20.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:20.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:20.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:20.953][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.958][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.963][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:20.964][private$selectFields]
biodb.TRACE[2024-07-13 16:04:20.965][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:20.966][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:20.967][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:20.968][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.970][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.971][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.972][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.973][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.975][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.977][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.978][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:20.979][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:20.981][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.982][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.984][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.986][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:20.987][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:20.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:20.998][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:20.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:21.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:21.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:21.003][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:21.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:21.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:21.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:21.008][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171699432].
biodb.DEBUG[2024-07-13 16:04:21.009][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:21.010][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-07-13 16:04:21.013][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:21.014][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:21.015][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:21.021][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:21.022][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:21.023][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:21.024][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:21.033][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:21.037][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-13 16:04:21.038][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-13 16:04:21.040][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-07-13 16:04:21.128][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-07-13 16:04:21.130][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-07-13 16:04:21.131][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-07-13 16:04:21.133][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-07-13 16:04:21.530][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-07-13 16:04:21.533][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content"
biodb.TRACE[2024-07-13 16:04:21.538][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.request"
biodb.DEBUG[2024-07-13 16:04:21.540][private$loadEntries] Creating entries from ids [2]: "171702946, 171651179".
biodb.DEBUG[2024-07-13 16:04:21.541][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-07-13 16:04:21.543][cch$loadFileContent] Trying to load 2 files from cache: [2]: "171702946, 171651179".
biodb.TRACE[2024-07-13 16:04:21.545][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-07-13 16:04:21.546][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-13 16:04:21.548][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-07-13 16:04:21.549][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-07-13 16:04:21.550][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-13 16:04:21.551][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-07-13 16:04:21.575][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-07-13 16:04:21.578][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171702946,171651179/XML".
biodb.DEBUG[2024-07-13 16:04:21.581][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-13 16:04:21.582][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-13 16:04:21.583][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171702946,171651179/XML".
biodb.TRACE[2024-07-13 16:04:21.745][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171702946,171651179/XML).
biodb.TRACE[2024-07-13 16:04:21.932][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171702946.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171651179.xml"
biodb.DEBUG[2024-07-13 16:04:21.935][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-13 16:04:21.936][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-07-13 16:04:21.938][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-07-13 16:04:21.940][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:21.941][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:21.942][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:21.948][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:21.949][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:21.950][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:21.951][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:21.955][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:21.956][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:21.957][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:21.958][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:21.960][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:21.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:21.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:21.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:21.965][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:21.966][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:21.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:21.968][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:21.970][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:21.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:21.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:21.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:21.975][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:21.976][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:21.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:21.979][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:21.980][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:21.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:21.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:21.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:21.985][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:21.987][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:21.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:21.989][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:21.991][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:21.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:21.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:21.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:21.996][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:21.997][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:21.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:21.999][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:22.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:22.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.006][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:22.007][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:22.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.010][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.011][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:22.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:22.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.016][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:22.018][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:22.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.020][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.022][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:22.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:22.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.027][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:22.028][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:22.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.030][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.032][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:22.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:22.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.037][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:22.038][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:22.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.041][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.042][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:22.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:22.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.047][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:22.049][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:22.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.051][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.052][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:22.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:22.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.057][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:22.059][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:22.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.061][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.063][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:22.064][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:22.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.066][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.068][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:22.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:22.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.073][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:22.074][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:22.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.076][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.078][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:22.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:22.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.083][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:22.084][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:22.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.087][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.088][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:22.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:22.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.093][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-07-13 16:04:22.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:22.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.098][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:22.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:22.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.103][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:22.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:22.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.108][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-07-13 16:04:22.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:22.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.113][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:22.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:22.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.118][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:22.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:22.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.123][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-07-13 16:04:22.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:22.126][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.128][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:22.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:22.131][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.133][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:22.135][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:22.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.138][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-07-13 16:04:22.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:22.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.143][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:22.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:22.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.148][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:22.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:22.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.153][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-07-13 16:04:22.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:22.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.158][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:22.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:22.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.163][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:22.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:22.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.167][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:22.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:22.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.172][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.182][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:22.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:22.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.187][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.192][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:22.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:22.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.197][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:22.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:22.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.202][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:22.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:22.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:22.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:22.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:22.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:22.225][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:22.226][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:22.227][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:22.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:22.232][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:22.233][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:22.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.235][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.237][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:22.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:22.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.242][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:22.243][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:22.244][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.246][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.247][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:22.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:22.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.252][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:22.253][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:22.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.256][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.257][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:22.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:22.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.262][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:22.263][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:22.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.266][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.267][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:22.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:22.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.272][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:22.274][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:22.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.276][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.278][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:22.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:22.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.282][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:22.284][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:22.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.286][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:22.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:22.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.293][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:22.294][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:22.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.296][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.298][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:22.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:22.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.303][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:22.304][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:22.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.306][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.308][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:22.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:22.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.313][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:22.314][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:22.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.317][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.318][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:22.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:22.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.323][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:22.324][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:22.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.327][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.328][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:22.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:22.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.333][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:22.335][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:22.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.337][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.338][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:22.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:22.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.343][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:22.345][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:22.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.347][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.349][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:22.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:22.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.354][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:22.355][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:22.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.357][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:22.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:22.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.364][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:22.365][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:22.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.367][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.369][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:22.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:22.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.374][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-07-13 16:04:22.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:22.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:22.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:22.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:22.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:22.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.389][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-07-13 16:04:22.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:22.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:22.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:22.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.399][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:22.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:22.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.404][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-07-13 16:04:22.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:22.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:22.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:22.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.414][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:22.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:22.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.419][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-07-13 16:04:22.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:22.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:22.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:22.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.429][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:22.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:22.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.433][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-07-13 16:04:22.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:22.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:22.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:22.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.443][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:22.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:22.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.448][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:22.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:22.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.453][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.458][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:22.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:22.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.468][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:22.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:22.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:22.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:22.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.483][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:22.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:22.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:22.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:22.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:22.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:22.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.497][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:22.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:22.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.502][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:22.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:22.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.507][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:22.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:22.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.512][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:22.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:22.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:22.517][self$createEntryFromContent] Accession numbers: 171702946, 171651179.
biodb.DEBUG[2024-07-13 16:04:22.519][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:22.520][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:22.522][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:22.523][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:22.529][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:22.530][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:22.531][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:22.532][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:22.534][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.539][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.544][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:22.545][private$selectFields]
biodb.TRACE[2024-07-13 16:04:22.546][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:22.547][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:22.548][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:22.550][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.551][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.553][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.554][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.556][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.558][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.559][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:22.561][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:22.562][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.563][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.566][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.567][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:22.568][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.578][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.583][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171702946].
biodb.DEBUG[2024-07-13 16:04:22.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:22.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:22.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:22.593][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:22.594][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:22.595][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:22.596][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:22.662][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.667][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.702][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:22.703][private$selectFields]
biodb.TRACE[2024-07-13 16:04:22.704][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:22.705][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:22.706][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:22.708][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.709][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.711][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.713][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.714][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.715][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.716][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.718][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:22.732][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:22.733][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.735][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.737][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.738][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:22.739][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.749][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.755][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171699478].
biodb.DEBUG[2024-07-13 16:04:22.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:22.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:22.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:22.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:22.765][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:22.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:22.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:22.769][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.774][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.779][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:22.780][private$selectFields]
biodb.TRACE[2024-07-13 16:04:22.781][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:22.783][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:22.784][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:22.785][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.786][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.789][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.790][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.791][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.794][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.795][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:22.796][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:22.797][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.799][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.801][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.802][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:22.803][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.808][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.813][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:22.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.819][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171651179].
biodb.DEBUG[2024-07-13 16:04:22.820][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:22.821][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-13 16:04:22.832][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-07-13 16:04:22.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-07-13 16:04:22.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.837][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-07-13 16:04:22.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-07-13 16:04:22.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-13 16:04:22.847][biodb::testThat]
biodb.INFO [2024-07-13 16:04:22.848][biodb::testThat] Running test function test_annotateMzValues_ppm_tol (" ppm tolerance works in annotateMzValues() ").
biodb.INFO [2024-07-13 16:04:22.850][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:04:22.851][biodb::testThat]
biodb.TRACE[2024-07-13 16:04:22.855][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-13 16:04:22.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-13 16:04:22.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.861][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-13 16:04:22.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-13 16:04:22.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.867][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:22.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:22.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.872][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:22.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:22.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.877][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:22.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:22.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.882][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:22.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:22.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.887][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:22.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:22.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.892][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:22.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:22.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:22.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:22.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:22.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:22.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:22.910][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:22.911][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:22.912][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:22.919][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:22.920][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:22.921][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:22.922][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:22.930][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.2369364:204.2430636[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:22.935][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:22.937][cch$loadFileContent] Trying to load 1 files from cache: [1]: "aa9cb23a1eb4b2596e7c242b1c35f744".
biodb.TRACE[2024-07-13 16:04:22.938][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:22.940][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/aa9cb23a1eb4b2596e7c242b1c35f744.content".
biodb.DEBUG[2024-07-13 16:04:22.942][private$loadEntries] Creating entries from ids [1]: "171540323".
biodb.DEBUG[2024-07-13 16:04:22.944][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-13 16:04:22.946][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171540323".
biodb.TRACE[2024-07-13 16:04:22.947][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:22.949][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171540323.xml".
biodb.DEBUG[2024-07-13 16:04:22.951][conn$getEntryContent] 1 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-07-13 16:04:22.952][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-07-13 16:04:22.954][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-07-13 16:04:22.956][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:22.957][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:22.958][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:22.965][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:22.966][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:22.968][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:22.969][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:22.973][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:22.974][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:22.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.977][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:22.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:22.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.985][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:22.987][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:22.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.989][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.991][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:22.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:22.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:22.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:22.997][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:22.999][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:23.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.002][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.004][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:23.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:23.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.009][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:23.010][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:23.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.012][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:23.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:23.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.019][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:23.021][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:23.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.023][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:23.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:23.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.030][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:23.031][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:23.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.033][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:23.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:23.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.040][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:23.042][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:23.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.044][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.046][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:23.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:23.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.051][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:23.052][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:23.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.055][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.056][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:23.057][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:23.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.061][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:23.063][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:23.064][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.065][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.067][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:23.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:23.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.072][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:23.073][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:23.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.076][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.077][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:23.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:23.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.082][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:23.084][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:23.085][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.086][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.088][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:23.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:23.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.099][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:23.100][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:23.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.103][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.104][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:23.106][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:23.107][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.110][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:23.111][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:23.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.113][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.115][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:23.116][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:23.117][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.120][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:23.121][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:23.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.124][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.125][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:23.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:23.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.131][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-07-13 16:04:23.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:23.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:23.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:23.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.141][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:23.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:23.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.146][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-07-13 16:04:23.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:23.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:23.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:23.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:23.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:23.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.161][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-07-13 16:04:23.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:23.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:23.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:23.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:23.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:23.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.176][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-07-13 16:04:23.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:23.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.181][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:23.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:23.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:23.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:23.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.191][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-07-13 16:04:23.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:23.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.196][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:23.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:23.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:23.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:23.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.206][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:23.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:23.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.211][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.216][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.221][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:23.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:23.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.226][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.230][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:23.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:23.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:23.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:23.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.240][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:23.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:23.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:23.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:23.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:23.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:23.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:23.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:23.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:23.260][self$createEntryFromContent] Accession numbers: 171540323.
biodb.DEBUG[2024-07-13 16:04:23.261][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:23.263][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:23.264][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:23.265][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:23.271][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:23.272][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:23.273][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:23.275][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:23.276][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.286][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:23.287][private$selectFields]
biodb.TRACE[2024-07-13 16:04:23.288][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:23.289][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:23.290][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:23.292][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.293][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.295][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.296][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.298][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.300][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.301][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:23.302][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:23.304][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.305][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.306][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.307][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.308][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:23.310][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.314][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.319][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.325][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171632701].
biodb.DEBUG[2024-07-13 16:04:23.326][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:23.327][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:23.328][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:23.334][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:23.335][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:23.336][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:23.337][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:23.339][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.344][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.349][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:23.350][private$selectFields]
biodb.TRACE[2024-07-13 16:04:23.351][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:23.352][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:23.353][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:23.354][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.356][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.358][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.359][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.361][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.363][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.364][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:23.365][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:23.366][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.368][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.370][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.371][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:23.372][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.378][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.381][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.383][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.385][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.386][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.388][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171615005].
biodb.DEBUG[2024-07-13 16:04:23.389][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:23.390][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:23.391][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:23.398][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:23.399][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:23.400][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:23.401][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:23.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.408][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.409][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.410][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.413][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:23.414][private$selectFields]
biodb.TRACE[2024-07-13 16:04:23.415][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:23.416][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:23.418][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:23.419][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.420][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.423][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.424][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.425][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.428][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.429][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:23.430][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:23.431][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.433][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.435][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.436][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:23.437][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.444][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.447][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.449][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:23.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:23.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:23.453][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171540323].
biodb.DEBUG[2024-07-13 16:04:23.454][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:23.455][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-07-13 16:04:23.458][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:23.459][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:23.460][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:23.466][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:23.468][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:23.469][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:23.470][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:23.478][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715:226.19339285[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:23.483][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-13 16:04:23.484][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-13 16:04:23.486][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-07-13 16:04:23.574][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-07-13 16:04:23.576][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-07-13 16:04:23.578][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-07-13 16:04:23.580][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18660715%3A226.19339285%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-07-13 16:04:23.681][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-07-13 16:04:23.684][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.content"
biodb.TRACE[2024-07-13 16:04:23.689][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/cdac68f12e8f2043e94276de0cd65925.request"
biodb.DEBUG[2024-07-13 16:04:23.691][private$loadEntries] Creating entries from ids [2]: "171608484, 171459563".
biodb.DEBUG[2024-07-13 16:04:23.693][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-07-13 16:04:23.695][cch$loadFileContent] Trying to load 2 files from cache: [2]: "171608484, 171459563".
biodb.TRACE[2024-07-13 16:04:23.696][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-07-13 16:04:23.698][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-13 16:04:23.699][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-07-13 16:04:23.700][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-07-13 16:04:23.701][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-13 16:04:23.703][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-07-13 16:04:23.704][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-07-13 16:04:23.713][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171608484,171459563/XML".
biodb.DEBUG[2024-07-13 16:04:23.716][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-13 16:04:23.718][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-13 16:04:23.719][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171608484,171459563/XML".
biodb.TRACE[2024-07-13 16:04:23.824][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171608484,171459563/XML).
biodb.TRACE[2024-07-13 16:04:23.975][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171608484.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171459563.xml"
biodb.DEBUG[2024-07-13 16:04:23.978][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-13 16:04:23.980][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-07-13 16:04:23.981][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-07-13 16:04:23.983][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:23.985][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:23.986][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:23.992][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:23.993][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:23.994][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:23.996][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:23.999][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:24.000][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:24.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.002][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:24.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:24.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.009][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:24.011][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:24.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.013][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.015][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:24.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:24.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.020][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:24.021][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:24.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.024][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:24.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:24.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.031][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:24.032][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:24.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.035][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.036][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:24.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:24.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.042][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:24.043][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:24.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.045][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.047][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:24.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:24.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.052][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:24.054][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:24.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.056][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:24.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:24.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.063][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:24.064][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:24.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.066][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.068][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:24.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:24.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.073][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:24.074][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:24.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.077][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.079][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:24.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:24.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.084][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:24.085][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:24.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.087][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.089][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:24.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:24.092][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.093][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.094][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:24.096][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:24.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.098][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.100][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:24.101][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:24.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.105][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:24.107][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:24.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.109][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.111][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:24.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:24.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.116][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:24.117][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:24.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.120][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.121][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:24.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:24.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.126][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:24.128][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:24.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.130][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.132][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:24.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:24.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.137][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:24.138][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:24.139][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.140][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.142][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:24.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:24.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.147][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-07-13 16:04:24.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:24.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.152][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:24.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:24.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:24.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:24.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.162][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-07-13 16:04:24.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:24.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.167][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:24.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:24.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:24.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:24.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.176][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-07-13 16:04:24.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:24.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.181][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:24.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:24.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:24.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:24.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.191][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-07-13 16:04:24.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:24.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.196][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:24.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:24.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:24.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:24.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.206][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-07-13 16:04:24.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:24.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.211][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:24.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:24.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.216][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:24.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:24.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.221][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:24.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:24.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.226][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.230][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.235][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:24.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:24.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.240][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.245][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:24.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:24.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.250][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:24.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:24.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.255][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:24.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:24.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:24.260][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:24.261][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:24.262][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:24.268][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:24.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:24.271][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:24.272][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:24.275][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:24.276][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:24.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.279][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.280][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:24.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:24.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.285][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:24.286][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:24.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.289][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.290][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:24.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:24.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.295][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:24.297][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:24.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.299][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.300][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:24.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:24.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.305][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:24.307][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:24.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.309][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.311][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:24.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:24.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.316][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:24.317][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:24.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.319][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.321][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:24.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:24.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.326][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:24.327][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:24.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.330][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.331][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:24.333][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:24.334][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.336][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:24.338][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:24.339][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.340][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.342][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:24.343][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:24.344][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.347][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:24.348][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:24.349][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.350][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.352][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:24.353][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:24.354][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.356][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.357][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:24.358][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:24.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.361][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.362][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:24.364][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:24.365][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.366][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.367][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:24.369][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:24.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.371][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.373][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:24.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:24.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.378][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:24.379][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:24.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.381][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.383][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:24.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:24.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.397][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:24.399][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:24.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.402][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.403][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:24.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:24.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.409][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:24.410][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:24.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.412][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.414][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:24.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:24.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.419][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:24.420][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:24.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.422][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.424][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:24.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:24.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.429][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-07-13 16:04:24.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:24.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:24.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:24.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:24.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:24.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.445][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-07-13 16:04:24.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:24.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.450][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:24.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:24.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.455][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:24.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:24.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.460][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-07-13 16:04:24.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:24.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.465][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:24.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:24.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.470][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:24.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:24.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.475][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-07-13 16:04:24.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:24.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.480][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:24.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:24.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.485][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:24.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:24.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.490][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-07-13 16:04:24.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:24.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.495][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:24.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:24.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:24.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:24.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.505][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:24.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:24.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.515][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:24.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:24.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.524][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:24.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:24.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.534][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:24.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:24.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.539][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:24.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:24.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:24.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:24.547][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.549][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:24.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:24.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.554][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:24.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:24.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.559][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:24.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:24.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.564][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:24.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:24.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.569][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:24.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:24.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:24.574][self$createEntryFromContent] Accession numbers: 171608484, 171459563.
biodb.DEBUG[2024-07-13 16:04:24.575][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:24.577][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:24.578][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:24.579][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:24.585][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:24.586][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:24.588][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:24.589][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:24.590][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.595][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.600][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:24.601][private$selectFields]
biodb.TRACE[2024-07-13 16:04:24.602][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:24.603][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:24.605][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:24.606][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.607][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.609][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.611][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.612][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.613][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.614][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.615][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:24.617][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:24.618][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.619][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.622][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.623][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:24.624][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.629][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.640][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171699478].
biodb.DEBUG[2024-07-13 16:04:24.641][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:24.642][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:24.643][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:24.649][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:24.650][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:24.651][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:24.653][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:24.654][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.659][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.664][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:24.665][private$selectFields]
biodb.TRACE[2024-07-13 16:04:24.666][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:24.667][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:24.668][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:24.670][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.671][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.673][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.675][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.676][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.678][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.679][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:24.681][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:24.682][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.683][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.686][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.687][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:24.688][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.693][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.698][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.704][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171608484].
biodb.DEBUG[2024-07-13 16:04:24.705][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:24.706][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:24.707][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:24.713][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:24.715][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:24.716][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:24.717][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:24.719][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.724][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.729][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:24.730][private$selectFields]
biodb.TRACE[2024-07-13 16:04:24.731][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:24.732][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:24.733][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:24.735][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.736][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.738][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.740][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.741][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.743][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.745][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:24.746][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:24.747][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.748][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.751][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.752][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:24.753][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.758][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.763][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:24.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.769][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171459563].
biodb.DEBUG[2024-07-13 16:04:24.770][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:24.771][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-13 16:04:24.782][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:24.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:24.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.788][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:24.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:24.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.793][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:24.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:24.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.798][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:24.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:24.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.803][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:24.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:24.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.808][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:24.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:24.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.812][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.813][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:24.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:24.816][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.817][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.818][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:24.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:24.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:24.832][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:24.833][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:24.834][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:24.840][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:24.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:24.843][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:24.844][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:24.852][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.120521206254:204.126644913746[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:24.856][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:24.858][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3123cd8cb57ce8b130489fc490c416f0".
biodb.TRACE[2024-07-13 16:04:24.860][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:24.861][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/3123cd8cb57ce8b130489fc490c416f0.content".
biodb.DEBUG[2024-07-13 16:04:24.864][private$loadEntries] Creating entries from ids [2]: "171690235, 171661147".
biodb.DEBUG[2024-07-13 16:04:24.865][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-07-13 16:04:24.867][cch$loadFileContent] Trying to load 2 files from cache: [2]: "171690235, 171661147".
biodb.TRACE[2024-07-13 16:04:24.869][cch$loadFileContent] file.exist = [2]: "TRUE, TRUE".
biodb.TRACE[2024-07-13 16:04:24.871][loadFileContents] Loaded 2 files from cache: [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171690235.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171661147.xml".
biodb.DEBUG[2024-07-13 16:04:24.872][conn$getEntryContent] 2 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-07-13 16:04:24.874][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-07-13 16:04:24.875][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-07-13 16:04:24.877][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:24.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:24.880][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:24.886][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:24.887][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:24.888][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:24.889][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:24.893][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:24.894][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:24.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.897][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.898][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:24.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:24.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.903][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:24.904][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:24.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.907][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:24.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:24.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.914][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:24.915][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:24.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.917][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:24.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:24.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.924][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:24.925][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:24.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.928][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:24.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:24.932][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.934][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:24.936][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:24.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.938][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.940][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:24.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:24.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.945][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:24.946][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:24.948][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.949][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.950][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:24.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:24.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.955][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:24.957][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:24.958][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.959][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.961][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:24.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:24.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.966][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:24.967][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:24.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.970][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.971][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:24.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:24.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.976][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:24.978][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:24.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.980][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.982][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:24.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:24.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.987][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:24.988][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:24.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.990][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.992][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:24.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:24.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:24.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:24.997][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:24.998][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:25.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.001][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.002][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:25.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:25.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.007][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:25.009][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:25.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.011][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.013][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:25.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:25.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.018][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:25.019][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:25.020][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.021][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.023][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:25.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:25.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.028][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:25.029][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:25.030][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.032][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.033][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:25.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:25.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.038][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-07-13 16:04:25.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:25.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.043][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:25.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:25.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:25.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:25.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.053][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-07-13 16:04:25.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:25.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:25.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:25.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.063][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:25.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:25.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.068][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-07-13 16:04:25.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:25.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:25.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:25.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.078][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:25.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:25.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.083][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-07-13 16:04:25.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:25.085][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.086][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:25.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:25.090][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.091][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.092][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:25.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:25.095][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.097][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-07-13 16:04:25.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:25.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.102][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:25.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:25.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.106][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.107][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:25.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:25.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.111][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.112][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:25.113][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:25.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.116][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.117][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.121][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.122][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.127][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:25.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:25.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.132][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.137][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:25.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:25.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.142][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:25.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:25.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:25.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:25.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:25.152][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:25.153][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:25.154][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:25.160][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:25.161][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:25.162][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:25.164][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:25.167][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:25.168][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:25.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.171][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.172][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:25.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:25.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.177][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:25.178][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:25.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.181][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:25.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:25.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.188][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:25.189][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:25.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.191][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:25.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:25.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.198][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:25.200][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:25.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.202][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.204][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:25.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:25.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.209][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:25.210][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:25.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.212][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.214][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:25.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:25.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.219][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:25.221][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:25.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.223][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.225][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:25.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:25.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.230][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:25.231][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:25.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.234][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.235][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:25.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:25.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.240][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:25.242][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:25.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.244][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.246][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:25.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:25.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.251][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:25.257][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:25.259][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.260][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.262][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:25.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:25.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.267][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:25.269][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:25.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.271][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.273][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:25.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:25.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.278][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:25.279][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:25.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.281][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.283][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:25.284][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:25.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.287][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.288][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:25.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:25.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.293][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:25.295][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:25.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.297][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.299][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:25.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:25.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.304][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:25.305][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:25.307][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.308][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.309][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:25.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:25.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.315][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-07-13 16:04:25.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:25.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:25.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:25.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:25.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:25.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.330][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-07-13 16:04:25.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:25.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.335][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:25.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:25.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:25.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:25.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.345][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-07-13 16:04:25.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:25.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:25.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:25.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.355][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:25.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:25.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.360][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-07-13 16:04:25.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:25.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.365][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:25.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:25.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.370][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:25.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:25.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.375][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-07-13 16:04:25.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:25.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.380][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:25.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:25.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.385][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:25.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:25.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.390][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:25.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:25.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.395][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.400][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.405][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:25.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:25.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.410][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:25.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:25.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:25.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:25.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:25.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:25.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.430][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:25.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:25.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.435][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:25.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:25.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.440][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:25.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:25.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.445][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:25.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:25.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.450][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:25.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:25.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.455][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:25.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:25.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:25.460][self$createEntryFromContent] Accession numbers: 171690235, 171661147.
biodb.DEBUG[2024-07-13 16:04:25.461][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:25.463][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:25.464][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:25.465][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:25.471][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:25.473][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:25.474][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:25.475][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:25.476][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.481][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.486][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:25.487][private$selectFields]
biodb.TRACE[2024-07-13 16:04:25.489][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:25.490][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:25.491][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:25.492][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.494][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.496][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.497][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.499][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.501][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.502][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:25.503][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:25.505][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.506][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.508][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.510][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:25.511][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.516][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.521][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.526][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171699432].
biodb.DEBUG[2024-07-13 16:04:25.528][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:25.529][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:25.530][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:25.536][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:25.537][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:25.538][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:25.539][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:25.541][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.551][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:25.552][private$selectFields]
biodb.TRACE[2024-07-13 16:04:25.553][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:25.554][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:25.556][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:25.557][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.558][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.559][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.561][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.562][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.563][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.565][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.567][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:25.568][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:25.569][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.570][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.573][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.574][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:25.575][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.580][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.585][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.591][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171690235].
biodb.DEBUG[2024-07-13 16:04:25.592][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:25.593][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:25.594][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:25.601][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:25.602][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:25.603][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:25.604][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:25.606][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.611][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.616][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:25.617][private$selectFields]
biodb.TRACE[2024-07-13 16:04:25.618][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:25.619][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:25.620][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:25.622][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.623][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.625][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.627][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.628][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.630][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.632][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:25.633][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:25.634][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.635][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.638][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.639][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:25.640][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.645][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.650][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:25.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:25.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:25.656][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171661147].
biodb.DEBUG[2024-07-13 16:04:25.657][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:25.658][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-07-13 16:04:25.661][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:25.662][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:25.663][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:25.669][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:25.671][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:25.672][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:25.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:25.687][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429:226.062362304571[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:25.692][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-13 16:04:25.694][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-13 16:04:25.696][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-07-13 16:04:25.786][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-07-13 16:04:25.787][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-07-13 16:04:25.789][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-07-13 16:04:25.791][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.055580535429%3A226.062362304571%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-07-13 16:04:25.896][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-07-13 16:04:25.899][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.content"
biodb.TRACE[2024-07-13 16:04:25.904][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/7556db59d44473be447d2dcbbebfba9b.request"
biodb.DEBUG[2024-07-13 16:04:25.907][private$loadEntries] Creating entries from ids [1]: "171625410".
biodb.DEBUG[2024-07-13 16:04:25.908][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-13 16:04:25.910][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171625410".
biodb.TRACE[2024-07-13 16:04:25.912][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-13 16:04:25.913][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-13 16:04:25.915][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-07-13 16:04:25.916][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-07-13 16:04:25.917][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-13 16:04:25.919][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-07-13 16:04:25.920][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-13 16:04:25.922][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171625410/XML".
biodb.DEBUG[2024-07-13 16:04:25.925][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-13 16:04:25.927][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-13 16:04:25.928][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171625410/XML".
biodb.TRACE[2024-07-13 16:04:26.064][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171625410/XML).
biodb.TRACE[2024-07-13 16:04:26.191][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171625410.xml"
biodb.DEBUG[2024-07-13 16:04:26.194][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-13 16:04:26.195][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-07-13 16:04:26.197][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-07-13 16:04:26.198][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:26.200][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:26.201][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:26.207][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:26.208][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:26.209][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:26.210][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:26.214][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:26.215][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:26.216][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.217][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.219][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:26.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:26.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.224][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:26.225][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:26.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.228][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.229][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:26.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:26.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.234][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:26.235][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:26.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.238][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.239][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:26.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:26.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.244][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:26.246][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:26.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.248][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:26.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:26.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.255][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:26.256][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:26.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.258][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:26.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:26.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.265][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:26.267][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:26.268][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.269][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.271][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:26.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:26.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.276][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:26.277][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:26.278][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.279][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.281][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:26.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:26.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.286][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:26.288][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:26.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.290][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.291][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:26.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:26.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.297][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:26.298][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:26.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.300][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.302][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:26.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:26.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.307][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:26.308][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:26.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.311][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.312][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:26.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:26.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.316][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.317][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:26.319][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:26.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.321][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.323][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:26.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:26.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.326][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.328][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:26.329][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:26.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.331][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.333][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:26.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:26.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.338][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:26.339][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:26.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.342][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.343][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:26.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:26.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.349][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:26.350][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:26.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.352][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.354][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:26.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:26.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.359][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-07-13 16:04:26.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:26.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:26.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:26.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:26.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:26.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.374][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-07-13 16:04:26.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:26.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:26.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:26.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:26.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:26.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.389][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-07-13 16:04:26.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:26.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:26.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:26.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.399][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:26.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:26.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.404][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-07-13 16:04:26.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:26.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:26.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:26.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.414][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:26.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:26.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.419][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-07-13 16:04:26.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:26.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.424][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:26.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:26.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.429][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:26.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:26.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.434][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:26.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:26.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.439][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.444][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.449][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:26.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:26.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.454][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.459][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:26.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:26.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.464][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:26.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:26.467][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.469][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:26.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:26.472][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.474][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:26.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:26.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.479][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:26.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:26.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.484][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:26.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:26.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:26.489][self$createEntryFromContent] Accession numbers: 171625410.
biodb.DEBUG[2024-07-13 16:04:26.491][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:26.493][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:26.494][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:26.495][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:26.501][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:26.502][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:26.503][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:26.504][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:26.506][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.511][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.516][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:26.517][private$selectFields]
biodb.TRACE[2024-07-13 16:04:26.518][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:26.519][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:26.521][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:26.522][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.523][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.525][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.527][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.528][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.530][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.532][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:26.533][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:26.534][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.535][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.538][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.539][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:26.540][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.545][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.550][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.556][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171699478].
biodb.DEBUG[2024-07-13 16:04:26.557][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:26.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:26.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:26.576][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:26.577][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:26.578][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:26.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:26.581][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.586][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.591][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:26.592][private$selectFields]
biodb.TRACE[2024-07-13 16:04:26.593][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:26.595][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:26.596][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:26.597][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.599][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.601][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.602][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.603][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.606][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.607][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:26.608][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:26.610][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.611][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.613][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.615][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:26.616][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.621][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.626][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.631][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171651179].
biodb.DEBUG[2024-07-13 16:04:26.633][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:26.634][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:26.635][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:26.641][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:26.642][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:26.643][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:26.645][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:26.646][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.651][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.656][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:26.657][private$selectFields]
biodb.TRACE[2024-07-13 16:04:26.658][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:26.660][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:26.661][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:26.662][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.663][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.666][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.667][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.668][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.671][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.672][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:26.673][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:26.674][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.676][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.678][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.679][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:26.680][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.685][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.690][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.696][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171625410].
biodb.DEBUG[2024-07-13 16:04:26.697][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:26.698][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-13 16:04:26.709][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-07-13 16:04:26.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-07-13 16:04:26.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.714][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-07-13 16:04:26.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-07-13 16:04:26.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-13 16:04:26.724][biodb::testThat]
biodb.INFO [2024-07-13 16:04:26.725][biodb::testThat] Running test function test_annotateMzValues_input_dataframe_untouched (" Input data frame is not modified by annotateMzValues() ").
biodb.INFO [2024-07-13 16:04:26.726][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:04:26.727][biodb::testThat]
biodb.TRACE[2024-07-13 16:04:26.731][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-13 16:04:26.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-13 16:04:26.733][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.736][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-13 16:04:26.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-13 16:04:26.738][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.741][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:26.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:26.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.746][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:26.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:26.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.751][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:26.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:26.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:26.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:26.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.761][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:26.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:26.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:26.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:26.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.771][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:26.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:26.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.776][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:26.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:26.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:26.786][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:26.787][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:26.788][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:26.794][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:26.796][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:26.797][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:26.798][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:26.806][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:26.810][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:26.812][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-07-13 16:04:26.813][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:26.815][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-07-13 16:04:26.817][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:26.819][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:26.820][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:26.821][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:26.827][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:26.829][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:26.830][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:26.831][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:26.832][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.837][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.842][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:26.843][private$selectFields]
biodb.TRACE[2024-07-13 16:04:26.845][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:26.846][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:26.847][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:26.848][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.850][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.852][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.853][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.855][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.857][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.858][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:26.860][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:26.861][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.862][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.863][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.864][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.866][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:26.867][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.872][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.877][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.882][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171632701].
biodb.DEBUG[2024-07-13 16:04:26.883][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:26.884][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:26.885][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:26.891][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:26.892][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:26.894][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:26.895][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:26.896][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.901][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.906][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:26.907][private$selectFields]
biodb.TRACE[2024-07-13 16:04:26.908][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:26.909][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:26.911][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:26.912][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.913][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.916][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.917][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.918][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.920][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.922][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:26.923][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:26.924][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.925][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.928][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.929][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:26.930][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.935][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.937][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.940][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.942][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.943][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.945][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171615080].
biodb.DEBUG[2024-07-13 16:04:26.946][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:26.947][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:26.949][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:26.955][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:26.956][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:26.957][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:26.958][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:26.959][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.964][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.969][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:26.970][private$selectFields]
biodb.TRACE[2024-07-13 16:04:26.971][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:26.973][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:26.974][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:26.975][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.976][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.979][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.980][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.981][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.984][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.985][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:26.986][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:26.987][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.989][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:26.991][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:26.992][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:26.993][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:26.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.005][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.016][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171615005].
biodb.DEBUG[2024-07-13 16:04:27.017][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:27.018][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-07-13 16:04:27.021][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:27.022][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:27.023][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:27.029][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:27.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:27.032][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:27.033][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:27.041][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:27.045][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:27.047][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-07-13 16:04:27.048][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:27.050][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-07-13 16:04:27.052][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:27.054][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:27.055][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:27.056][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:27.062][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:27.064][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:27.065][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:27.066][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:27.067][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.072][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.077][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.078][private$selectFields]
biodb.TRACE[2024-07-13 16:04:27.079][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:27.081][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:27.082][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.083][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.084][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.087][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.088][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.089][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.090][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.091][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.093][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.094][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.095][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.096][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.099][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.100][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:27.101][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.103][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.106][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.111][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.116][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171699478].
biodb.DEBUG[2024-07-13 16:04:27.118][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:27.119][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:27.120][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:27.126][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:27.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:27.128][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:27.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:27.131][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.136][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.141][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.142][private$selectFields]
biodb.TRACE[2024-07-13 16:04:27.143][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:27.144][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:27.145][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.146][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.148][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.150][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.151][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.153][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.155][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.156][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.157][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.159][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.160][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.162][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.163][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:27.165][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.170][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.175][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.176][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.180][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171652018].
biodb.DEBUG[2024-07-13 16:04:27.181][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:27.182][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:27.183][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:27.189][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:27.191][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:27.192][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:27.193][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:27.194][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.199][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.204][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.205][private$selectFields]
biodb.TRACE[2024-07-13 16:04:27.206][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:27.207][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:27.209][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.210][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.211][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.214][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.215][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.216][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.218][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.220][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.221][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.222][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.223][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.226][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.227][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:27.228][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.233][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.238][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.243][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171652005].
biodb.DEBUG[2024-07-13 16:04:27.244][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:27.246][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-13 16:04:27.271][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:27.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:27.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.276][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:27.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:27.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.281][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:27.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:27.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.286][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:27.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:27.289][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.290][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.291][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:27.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:27.294][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.296][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:27.298][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:27.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.301][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:27.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:27.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.306][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:27.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:27.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:27.316][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:27.317][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:27.318][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:27.325][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:27.326][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:27.327][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:27.328][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:27.337][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:27.341][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:27.343][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-07-13 16:04:27.344][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:27.346][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-07-13 16:04:27.348][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:27.350][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:27.351][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:27.352][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:27.358][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:27.360][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:27.361][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:27.362][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:27.363][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.368][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.373][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.374][private$selectFields]
biodb.TRACE[2024-07-13 16:04:27.376][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:27.377][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:27.378][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.379][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.381][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.383][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.384][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.386][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.388][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.389][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.391][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.392][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.393][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.395][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.397][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:27.398][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.403][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.408][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.414][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171715183].
biodb.DEBUG[2024-07-13 16:04:27.415][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:27.416][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:27.417][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:27.424][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:27.425][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:27.426][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:27.427][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:27.435][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.441][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.446][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.447][private$selectFields]
biodb.TRACE[2024-07-13 16:04:27.449][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:27.450][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:27.451][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.452][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.454][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.456][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.457][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.459][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.461][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.462][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.464][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.465][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.466][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.467][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.468][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.470][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:27.471][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.476][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.481][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.487][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171715181].
biodb.DEBUG[2024-07-13 16:04:27.488][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:27.489][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:27.490][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:27.496][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:27.498][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:27.499][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:27.500][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:27.501][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.507][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.512][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.513][private$selectFields]
biodb.TRACE[2024-07-13 16:04:27.514][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:27.515][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:27.516][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.518][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.519][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.521][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.522][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.524][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.526][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.527][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.529][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.530][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.531][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.533][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.535][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:27.536][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.541][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.551][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171699432].
biodb.DEBUG[2024-07-13 16:04:27.553][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:27.554][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-07-13 16:04:27.556][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:27.558][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:27.559][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:27.565][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:27.567][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:27.568][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:27.569][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:27.578][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:27.582][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:27.584][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-07-13 16:04:27.585][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:27.587][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-07-13 16:04:27.589][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:27.591][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:27.592][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:27.593][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:27.599][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:27.601][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:27.602][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:27.603][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:27.604][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.609][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.614][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.615][private$selectFields]
biodb.TRACE[2024-07-13 16:04:27.617][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:27.618][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:27.619][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.620][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.622][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.624][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.625][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.626][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.628][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.629][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.630][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.631][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.632][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.634][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.636][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.637][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:27.639][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.644][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.649][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.654][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171702946].
biodb.DEBUG[2024-07-13 16:04:27.655][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:27.656][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:27.657][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:27.663][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:27.665][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:27.666][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:27.667][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:27.668][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.673][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.678][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.679][private$selectFields]
biodb.TRACE[2024-07-13 16:04:27.681][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:27.682][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:27.683][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.684][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.686][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.688][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.689][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.690][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.692][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.693][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.694][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.695][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.696][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.698][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.699][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.700][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.701][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:27.703][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.707][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.718][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171699478].
biodb.DEBUG[2024-07-13 16:04:27.719][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:27.720][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:27.721][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:27.728][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:27.729][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:27.730][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:27.731][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:27.733][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.743][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.744][private$selectFields]
biodb.TRACE[2024-07-13 16:04:27.745][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:27.746][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:27.747][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.749][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.750][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.753][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.754][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.755][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.758][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.759][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.761][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:27.762][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.763][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.766][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.767][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:27.768][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.774][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.779][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:27.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.784][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171651179].
biodb.DEBUG[2024-07-13 16:04:27.786][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:27.787][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-13 16:04:27.812][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-07-13 16:04:27.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-07-13 16:04:27.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.817][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-07-13 16:04:27.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-07-13 16:04:27.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.826][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:27.827][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:27.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.830][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.831][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:27.832][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:27.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.834][ef$get] fields variable is a list.
biodb.INFO [2024-07-13 16:04:27.836][biodb::testThat]
biodb.INFO [2024-07-13 16:04:27.838][biodb::testThat] Running test function test.annotateMzValues_real_values (" annotateMzValues() works correctly with real values. ").
biodb.INFO [2024-07-13 16:04:27.839][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:04:27.840][biodb::testThat]
biodb.TRACE[2024-07-13 16:04:27.843][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-13 16:04:27.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-13 16:04:27.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.848][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-13 16:04:27.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-13 16:04:27.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.853][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:27.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:27.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.859][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:27.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:27.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.869][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:27.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:27.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.875][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:27.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:27.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.880][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:27.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:27.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.885][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:27.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:27.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.890][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:27.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:27.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:27.895][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:27.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:27.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:27.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:27.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:27.904][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:27.905][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:27.911][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:27.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:27.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:27.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:27.923][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:27.927][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-13 16:04:27.929][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-13 16:04:27.931][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-07-13 16:04:28.019][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-07-13 16:04:28.020][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-07-13 16:04:28.022][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-07-13 16:04:28.024][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03%3A204.25%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-07-13 16:04:28.180][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-07-13 16:04:28.183][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content"
biodb.TRACE[2024-07-13 16:04:28.187][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.request"
biodb.DEBUG[2024-07-13 16:04:28.190][private$loadEntries] Creating entries from ids [3]: "171700947, 171699256, 171659133".
biodb.DEBUG[2024-07-13 16:04:28.191][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-07-13 16:04:28.193][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171700947, 171699256, 171659133".
biodb.TRACE[2024-07-13 16:04:28.195][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-07-13 16:04:28.196][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-13 16:04:28.197][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-07-13 16:04:28.198][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-07-13 16:04:28.200][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-13 16:04:28.201][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-07-13 16:04:28.202][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-07-13 16:04:28.204][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171700947,171699256,171659133/XML".
biodb.DEBUG[2024-07-13 16:04:28.207][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-13 16:04:28.208][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-13 16:04:28.210][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171700947,171699256,171659133/XML".
biodb.TRACE[2024-07-13 16:04:28.358][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171700947,171699256,171659133/XML).
biodb.TRACE[2024-07-13 16:04:28.515][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171700947.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171699256.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171659133.xml"
biodb.DEBUG[2024-07-13 16:04:28.518][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-13 16:04:28.520][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-07-13 16:04:28.521][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-07-13 16:04:28.523][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:28.524][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:28.525][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:28.532][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:28.533][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:28.534][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:28.535][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:28.538][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:28.540][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:28.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.542][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.544][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:28.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:28.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.548][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.549][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:28.550][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:28.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.553][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:28.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:28.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.559][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:28.561][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:28.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.563][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:28.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:28.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.570][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:28.571][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:28.572][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.574][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:28.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:28.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.580][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:28.582][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:28.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.584][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:28.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:28.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.591][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:28.592][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:28.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.595][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.596][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:28.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:28.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.601][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:28.603][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:28.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.605][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.607][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:28.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:28.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.612][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:28.613][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:28.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.616][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.617][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:28.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:28.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.622][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:28.624][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:28.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.626][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.628][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:28.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:28.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.633][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:28.634][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:28.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.637][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:28.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:28.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.643][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:28.645][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:28.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.647][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.649][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:28.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:28.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.654][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:28.655][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:28.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.658][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.659][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:28.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:28.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.664][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:28.666][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:28.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.668][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.670][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:28.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:28.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.675][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:28.676][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:28.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.679][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.680][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:28.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:28.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.685][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-07-13 16:04:28.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:28.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.690][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:28.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:28.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:28.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:28.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.701][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-07-13 16:04:28.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:28.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.706][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:28.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:28.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:28.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:28.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.716][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-07-13 16:04:28.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:28.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:28.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:28.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.727][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:28.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:28.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.732][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-07-13 16:04:28.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:28.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.737][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:28.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:28.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.742][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:28.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:28.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.747][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-07-13 16:04:28.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:28.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.752][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:28.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:28.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.757][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:28.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:28.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.763][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:28.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:28.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.768][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:28.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:28.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.773][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:28.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:28.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.778][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:28.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:28.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.783][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:28.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:28.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:28.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:28.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:28.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:28.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.798][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:28.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:28.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:28.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:28.805][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:28.806][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:28.812][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:28.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:28.815][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:28.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:28.819][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:28.821][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:28.822][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.823][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.825][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:28.826][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:28.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.830][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:28.831][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:28.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.834][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.836][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:28.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:28.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.852][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:28.854][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:28.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.856][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:28.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:28.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.863][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:28.865][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:28.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.867][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.869][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:28.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:28.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.874][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:28.875][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:28.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.878][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:28.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:28.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.885][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:28.886][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:28.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.888][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:28.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:28.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.895][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:28.897][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:28.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.899][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.901][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:28.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:28.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.906][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:28.907][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:28.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.910][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.912][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:28.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:28.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.917][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:28.918][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:28.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.920][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.922][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:28.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:28.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.927][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:28.929][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:28.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.931][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.933][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:28.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:28.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.938][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:28.939][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:28.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.942][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.943][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:28.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:28.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.948][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:28.950][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:28.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.952][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.954][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:28.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:28.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.958][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.959][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:28.960][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:28.962][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.963][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.964][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:28.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:28.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.969][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:28.971][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:28.972][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.973][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.975][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:28.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:28.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.980][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-07-13 16:04:28.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:28.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:28.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:28.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.991][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:28.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:28.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:28.996][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-07-13 16:04:28.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:28.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:28.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.001][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:29.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:29.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.006][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:29.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:29.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.011][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-07-13 16:04:29.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:29.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.017][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:29.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:29.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.022][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:29.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:29.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.027][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-07-13 16:04:29.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:29.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.032][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:29.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:29.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.038][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:29.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:29.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.043][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-07-13 16:04:29.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:29.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.048][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:29.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:29.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.053][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:29.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:29.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.058][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:29.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:29.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.064][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.069][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.074][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:29.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:29.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.079][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.084][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:29.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:29.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.089][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:29.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:29.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.094][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:29.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:29.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:29.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:29.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:29.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:29.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:29.108][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:29.109][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:29.110][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:29.114][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:29.115][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:29.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.117][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:29.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:29.121][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.124][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:29.125][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:29.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.128][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.129][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:29.131][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:29.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.135][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:29.136][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:29.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.138][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:29.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:29.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.145][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:29.146][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:29.148][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.149][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.150][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:29.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:29.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.155][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:29.157][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:29.158][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.159][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:29.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:29.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.166][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:29.167][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:29.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.169][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:29.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:29.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.176][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:29.178][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:29.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.180][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.182][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:29.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:29.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.187][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:29.188][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:29.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.190][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.192][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:29.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:29.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.197][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:29.199][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:29.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.201][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.203][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:29.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:29.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.208][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:29.209][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:29.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.211][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.213][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:29.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:29.216][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.218][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:29.220][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:29.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.222][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.224][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:29.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:29.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.229][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:29.230][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:29.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.232][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:29.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:29.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.239][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:29.241][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:29.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.243][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.245][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:29.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:29.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.250][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:29.251][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:29.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.254][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.255][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:29.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:29.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.260][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-07-13 16:04:29.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:29.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.266][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:29.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:29.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.271][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:29.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:29.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.276][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-07-13 16:04:29.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:29.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.285][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.287][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:29.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:29.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:29.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:29.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.298][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-07-13 16:04:29.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:29.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:29.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:29.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.308][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:29.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:29.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.313][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-07-13 16:04:29.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:29.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.318][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:29.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:29.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.323][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:29.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:29.325][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.328][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-07-13 16:04:29.329][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:29.330][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.333][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:29.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:29.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.338][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:29.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:29.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.343][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:29.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:29.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.349][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.354][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.359][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:29.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:29.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.364][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.369][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:29.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:29.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.374][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:29.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:29.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.379][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:29.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:29.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.384][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:29.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:29.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.389][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:29.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:29.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.394][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:29.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:29.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.399][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:29.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:29.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.404][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:29.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:29.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.410][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:29.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:29.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.415][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:29.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:29.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.420][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:29.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:29.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.425][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:29.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:29.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:29.430][self$createEntryFromContent] Accession numbers: 171700947, 171699256, 171659133.
biodb.DEBUG[2024-07-13 16:04:29.432][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:29.434][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:29.435][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:29.436][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:29.442][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:29.443][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:29.444][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:29.445][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:29.447][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.452][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.457][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:29.458][private$selectFields]
biodb.TRACE[2024-07-13 16:04:29.459][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:29.460][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:29.461][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:29.462][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.464][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.466][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.467][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.469][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.471][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.472][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:29.474][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:29.475][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.476][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.478][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.480][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:29.481][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.486][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.491][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.496][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171700947].
biodb.DEBUG[2024-07-13 16:04:29.497][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:29.498][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:29.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:29.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:29.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:29.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:29.509][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:29.511][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.516][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.521][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:29.522][private$selectFields]
biodb.TRACE[2024-07-13 16:04:29.523][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:29.524][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:29.525][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:29.527][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.528][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.530][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.532][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.533][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.535][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.537][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:29.538][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:29.539][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.540][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.543][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.544][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:29.545][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.550][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.555][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.561][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171699256].
biodb.DEBUG[2024-07-13 16:04:29.562][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:29.563][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:29.564][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:29.570][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:29.572][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:29.573][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:29.574][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:29.575][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.580][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.585][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:29.586][private$selectFields]
biodb.TRACE[2024-07-13 16:04:29.588][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:29.589][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:29.590][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:29.591][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.592][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.595][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.596][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.597][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.600][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.601][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:29.602][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:29.603][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.605][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.607][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.608][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:29.610][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.615][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.620][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:29.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:29.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:29.625][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171659133].
biodb.DEBUG[2024-07-13 16:04:29.626][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:29.628][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-07-13 16:04:29.630][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:29.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:29.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:29.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:29.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:29.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:29.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:29.650][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:29.654][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-13 16:04:29.655][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-13 16:04:29.658][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-07-13 16:04:29.746][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-07-13 16:04:29.747][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-07-13 16:04:29.749][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-07-13 16:04:29.751][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98%3A226.2%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-07-13 16:04:30.096][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-07-13 16:04:30.098][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content"
biodb.TRACE[2024-07-13 16:04:30.103][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.request"
biodb.DEBUG[2024-07-13 16:04:30.106][private$loadEntries] Creating entries from ids [2]: "171662331, 171655526".
biodb.DEBUG[2024-07-13 16:04:30.108][conn$getEntryContent] Get PubChem Compound entry content(s) for 2 id(s)...
biodb.TRACE[2024-07-13 16:04:30.110][cch$loadFileContent] Trying to load 2 files from cache: [2]: "171662331, 171655526".
biodb.TRACE[2024-07-13 16:04:30.111][cch$loadFileContent] file.exist = [2]: "FALSE, FALSE".
biodb.TRACE[2024-07-13 16:04:30.113][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-13 16:04:30.114][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-07-13 16:04:30.115][conn$getEntryContent] 2 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-07-13 16:04:30.116][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-13 16:04:30.118][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-07-13 16:04:30.119][private$retrieveContents] Get entry content(s) for 2 id(s)...
biodb.DEBUG[2024-07-13 16:04:30.121][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171662331,171655526/XML".
biodb.DEBUG[2024-07-13 16:04:30.124][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-13 16:04:30.126][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-13 16:04:30.127][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171662331,171655526/XML".
biodb.TRACE[2024-07-13 16:04:30.271][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171662331,171655526/XML).
biodb.TRACE[2024-07-13 16:04:30.417][private$doSaveContentToFile] Saving to cache [2]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171662331.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171655526.xml"
biodb.DEBUG[2024-07-13 16:04:30.420][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-13 16:04:30.432][self$createEntryFromContent] Creating PubChem Compound entries from 2 content(s).
biodb.DEBUG[2024-07-13 16:04:30.434][self$createEntryFromContent] Parsing 2 PubChem Compound entries.
biodb.DEBUG[2024-07-13 16:04:30.436][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:30.438][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:30.439][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:30.446][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:30.447][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:30.448][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:30.449][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:30.452][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:30.454][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:30.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.456][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.458][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:30.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:30.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.463][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:30.464][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:30.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.467][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.468][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:30.470][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:30.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.472][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.473][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:30.475][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:30.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.477][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.479][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:30.480][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:30.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.482][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.484][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:30.485][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:30.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.488][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.489][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:30.491][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:30.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.493][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.495][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:30.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:30.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.500][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:30.501][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:30.503][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.504][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.506][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:30.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:30.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.511][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:30.512][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:30.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.515][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.516][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:30.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:30.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.522][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:30.523][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:30.524][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.525][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.527][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:30.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:30.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.532][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:30.534][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:30.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.536][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.538][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:30.539][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:30.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.541][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.543][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:30.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:30.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.548][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:30.550][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:30.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.552][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.554][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:30.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:30.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.559][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:30.561][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:30.562][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.563][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.565][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:30.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:30.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.570][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-07-13 16:04:30.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:30.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.575][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-07-13 16:04:30.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:30.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.580][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-07-13 16:04:30.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:30.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.585][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-07-13 16:04:30.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:30.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.591][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-07-13 16:04:30.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:30.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.596][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:30.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:30.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.601][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:30.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:30.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:30.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:30.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.611][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:30.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:30.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.616][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:30.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:30.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.621][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:30.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:30.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.626][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:30.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:30.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:30.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:30.632][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:30.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:30.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:30.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:30.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:30.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:30.646][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:30.647][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:30.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.650][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.651][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:30.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:30.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.656][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:30.658][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:30.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.660][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.662][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:30.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:30.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.667][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:30.668][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:30.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.670][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.672][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:30.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:30.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.677][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:30.679][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:30.680][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.681][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.683][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:30.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:30.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.688][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:30.689][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:30.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.691][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:30.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:30.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.698][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:30.699][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:30.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.702][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.703][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:30.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:30.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.709][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:30.710][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:30.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.712][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.714][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:30.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:30.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.719][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:30.720][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:30.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.723][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.725][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:30.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:30.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.730][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:30.731][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:30.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.733][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.735][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:30.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:30.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.740][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:30.741][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:30.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.744][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.745][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:30.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:30.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.750][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:30.752][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:30.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.754][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.756][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:30.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:30.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.761][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:30.762][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:30.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.764][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.766][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:30.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:30.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.771][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:30.773][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:30.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.775][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.777][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:30.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:30.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.782][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:30.783][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:30.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.785][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.787][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:30.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:30.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.792][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-07-13 16:04:30.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:30.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.797][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:30.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:30.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.802][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:30.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:30.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.807][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-07-13 16:04:30.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:30.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:30.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:30.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.817][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:30.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:30.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.823][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-07-13 16:04:30.824][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:30.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.828][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:30.829][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:30.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.833][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:30.834][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:30.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.838][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-07-13 16:04:30.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:30.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.843][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:30.844][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:30.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.848][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:30.849][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:30.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.853][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-07-13 16:04:30.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:30.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.858][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:30.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:30.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.869][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:30.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:30.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.875][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:30.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:30.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.880][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:30.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:30.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.885][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:30.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:30.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.890][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:30.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:30.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.895][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:30.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:30.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:30.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:30.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:30.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:30.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.910][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:30.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:30.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.915][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:30.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:30.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.920][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:30.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:30.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.925][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:30.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:30.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.930][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:30.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:30.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.936][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:30.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:30.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.940][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:30.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:30.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:30.945][self$createEntryFromContent] Accession numbers: 171662331, 171655526.
biodb.DEBUG[2024-07-13 16:04:30.947][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:30.949][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:30.950][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:30.951][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:30.957][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:30.958][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:30.959][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:30.960][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:30.962][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:30.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:30.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.967][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:30.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:30.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.972][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:30.973][private$selectFields]
biodb.TRACE[2024-07-13 16:04:30.974][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:30.976][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:30.977][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:30.978][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:30.979][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:30.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.982][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.983][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:30.984][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:30.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.987][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.988][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:30.989][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:30.990][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:30.992][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:30.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:30.994][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:30.995][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:30.997][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:30.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:30.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.002][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.007][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.012][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171699478].
biodb.DEBUG[2024-07-13 16:04:31.014][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:31.015][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:31.016][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:31.022][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:31.023][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:31.024][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:31.025][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:31.027][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.032][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.037][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:31.038][private$selectFields]
biodb.TRACE[2024-07-13 16:04:31.039][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:31.040][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:31.042][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:31.043][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.044][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.046][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.048][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.049][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.051][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.053][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:31.054][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:31.055][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.056][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.059][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.060][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:31.061][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.066][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.071][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.077][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171662331].
biodb.DEBUG[2024-07-13 16:04:31.078][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:31.079][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:31.080][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:31.086][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:31.087][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:31.088][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:31.089][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:31.091][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.096][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.101][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:31.102][private$selectFields]
biodb.TRACE[2024-07-13 16:04:31.103][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:31.104][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:31.106][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:31.107][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.108][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.111][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.112][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.113][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.115][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.117][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:31.118][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:31.119][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.120][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.123][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.124][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:31.125][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.130][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.135][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.140][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171655526].
biodb.DEBUG[2024-07-13 16:04:31.142][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:31.143][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-07-13 16:04:31.168][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:31.169][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:31.170][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:31.176][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:31.178][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:31.179][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:31.180][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:31.188][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:31.192][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:31.194][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-07-13 16:04:31.196][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:31.197][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-07-13 16:04:31.199][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:31.201][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:31.202][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:31.203][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:31.210][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:31.211][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:31.212][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:31.213][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:31.214][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.219][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.224][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:31.226][private$selectFields]
biodb.TRACE[2024-07-13 16:04:31.227][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:31.228][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:31.229][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:31.230][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.232][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.234][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.235][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.237][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.239][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.240][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:31.241][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:31.243][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.244][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.245][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.246][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.247][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:31.249][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.254][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.259][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.264][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171632701].
biodb.DEBUG[2024-07-13 16:04:31.265][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:31.267][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:31.268][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:31.274][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:31.275][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:31.276][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:31.277][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:31.279][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.282][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.284][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.295][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:31.296][private$selectFields]
biodb.TRACE[2024-07-13 16:04:31.298][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:31.299][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:31.300][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:31.301][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.303][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.305][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.306][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.308][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.310][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.311][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:31.313][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:31.314][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.315][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.318][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.319][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:31.320][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.325][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.330][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.336][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171615080].
biodb.DEBUG[2024-07-13 16:04:31.337][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:31.338][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:31.339][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:31.346][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:31.347][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:31.348][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:31.349][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:31.351][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.355][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.356][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.361][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:31.362][private$selectFields]
biodb.TRACE[2024-07-13 16:04:31.363][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:31.365][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:31.366][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:31.367][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.368][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.371][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.372][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.373][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.376][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.377][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:31.378][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:31.380][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.381][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.383][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.384][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:31.386][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.391][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.396][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.401][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171615005].
biodb.DEBUG[2024-07-13 16:04:31.402][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:31.404][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-07-13 16:04:31.406][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:31.407][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:31.408][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:31.415][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:31.416][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:31.417][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:31.418][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:31.427][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:31.431][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:31.433][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-07-13 16:04:31.435][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:31.436][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-07-13 16:04:31.439][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:31.441][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:31.442][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:31.443][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:31.449][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:31.450][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:31.452][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:31.453][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:31.454][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.458][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.459][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.463][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.464][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:31.465][private$selectFields]
biodb.TRACE[2024-07-13 16:04:31.467][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:31.468][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:31.469][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:31.470][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.472][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.474][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.475][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.477][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.479][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.480][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:31.482][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:31.483][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.484][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.487][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.488][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:31.489][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.494][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.499][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.505][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171699478].
biodb.DEBUG[2024-07-13 16:04:31.506][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:31.507][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:31.508][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:31.514][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:31.516][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:31.517][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:31.518][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:31.519][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.525][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.530][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:31.531][private$selectFields]
biodb.TRACE[2024-07-13 16:04:31.532][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:31.533][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:31.534][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:31.536][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.537][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.539][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.541][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.542][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.544][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.546][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:31.547][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:31.548][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.549][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.551][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.552][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.553][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:31.554][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.559][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.564][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.570][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171652018].
biodb.DEBUG[2024-07-13 16:04:31.571][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:31.572][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:31.573][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:31.580][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:31.581][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:31.582][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:31.583][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:31.585][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.590][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.595][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:31.596][private$selectFields]
biodb.TRACE[2024-07-13 16:04:31.597][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:31.599][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:31.600][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:31.601][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.602][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.605][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.606][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.608][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.610][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.611][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:31.613][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:31.614][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.615][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.618][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.619][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:31.620][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.625][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.630][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:31.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:31.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:31.636][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171652005].
biodb.DEBUG[2024-07-13 16:04:31.637][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:31.638][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-07-13 16:04:31.665][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:31.666][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:31.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:31.673][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:31.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:31.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:31.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:31.686][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:31.690][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-13 16:04:31.692][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-13 16:04:31.694][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-07-13 16:04:31.783][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-07-13 16:04:31.784][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-07-13 16:04:31.786][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-07-13 16:04:31.788][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23%3A204.45%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-07-13 16:04:31.932][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-07-13 16:04:31.935][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content"
biodb.TRACE[2024-07-13 16:04:31.940][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.request"
biodb.DEBUG[2024-07-13 16:04:31.942][private$loadEntries] Creating entries from ids [1]: "171706621".
biodb.DEBUG[2024-07-13 16:04:31.944][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-13 16:04:31.946][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171706621".
biodb.TRACE[2024-07-13 16:04:31.947][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-13 16:04:31.948][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-13 16:04:31.950][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-07-13 16:04:31.951][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-07-13 16:04:31.952][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-13 16:04:31.954][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-07-13 16:04:31.962][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-13 16:04:31.965][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171706621/XML".
biodb.DEBUG[2024-07-13 16:04:31.969][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-13 16:04:31.970][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-13 16:04:31.972][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171706621/XML".
biodb.TRACE[2024-07-13 16:04:32.080][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171706621/XML).
biodb.TRACE[2024-07-13 16:04:32.235][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171706621.xml"
biodb.DEBUG[2024-07-13 16:04:32.238][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-13 16:04:32.240][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-07-13 16:04:32.241][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-07-13 16:04:32.243][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:32.244][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:32.246][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:32.252][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:32.253][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:32.254][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:32.255][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:32.263][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:32.264][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:32.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.267][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.268][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:32.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:32.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.273][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:32.275][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:32.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.277][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:32.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:32.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.307][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:32.308][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:32.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.311][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.312][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:32.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:32.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.321][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.322][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:32.324][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:32.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.333][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.335][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:32.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:32.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.343][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:32.345][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:32.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.347][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.349][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:32.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:32.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.354][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:32.355][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:32.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.358][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:32.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:32.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.364][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:32.366][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:32.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.368][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.370][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:32.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:32.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.375][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:32.376][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:32.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.378][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.380][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:32.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:32.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.385][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:32.386][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:32.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.389][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.390][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:32.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:32.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.396][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:32.397][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:32.398][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.399][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.401][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:32.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:32.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.406][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:32.407][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:32.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.410][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.411][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:32.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:32.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.417][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:32.418][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:32.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.420][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.422][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:32.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:32.425][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.427][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:32.428][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:32.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.431][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.432][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:32.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:32.435][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.438][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:32.439][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:32.440][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.442][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.443][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:32.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:32.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.448][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-07-13 16:04:32.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:32.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.454][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:32.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:32.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.459][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:32.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:32.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.464][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-07-13 16:04:32.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:32.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.469][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:32.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:32.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.473][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.474][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:32.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:32.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.479][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-07-13 16:04:32.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:32.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:32.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:32.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:32.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:32.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.494][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-07-13 16:04:32.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:32.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.500][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:32.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:32.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.505][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:32.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:32.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.510][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-07-13 16:04:32.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:32.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.514][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.515][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:32.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:32.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.520][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:32.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:32.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.525][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:32.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:32.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.530][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.535][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.541][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:32.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:32.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.551][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:32.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:32.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.556][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:32.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:32.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:32.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:32.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:32.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:32.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:32.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:32.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.576][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:32.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:32.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:32.582][self$createEntryFromContent] Accession numbers: 171706621.
biodb.DEBUG[2024-07-13 16:04:32.583][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:32.585][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:32.586][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:32.587][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:32.594][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:32.595][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:32.596][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:32.597][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:32.599][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.604][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.609][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:32.611][private$selectFields]
biodb.TRACE[2024-07-13 16:04:32.612][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:32.613][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:32.614][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:32.615][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.617][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.618][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.619][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.620][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.622][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.623][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.624][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.625][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:32.627][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:32.628][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.629][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.632][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.633][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:32.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.639][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.645][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.650][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171715183].
biodb.DEBUG[2024-07-13 16:04:32.651][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:32.653][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:32.654][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:32.660][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:32.661][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:32.662][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:32.663][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:32.665][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.670][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.675][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:32.676][private$selectFields]
biodb.TRACE[2024-07-13 16:04:32.677][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:32.679][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:32.680][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:32.681][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.683][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.685][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.686][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.693][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.700][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.701][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:32.703][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:32.704][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.706][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.708][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.709][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:32.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.721][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.726][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171715181].
biodb.DEBUG[2024-07-13 16:04:32.728][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:32.729][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:32.730][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:32.736][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:32.738][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:32.739][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:32.740][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:32.741][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.746][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.752][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:32.753][private$selectFields]
biodb.TRACE[2024-07-13 16:04:32.754][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:32.756][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:32.757][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:32.758][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.760][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.761][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.762][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.763][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.765][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.766][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.767][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.769][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:32.770][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:32.771][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.773][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.775][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.776][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:32.778][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.783][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:32.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:32.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:32.793][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171706621].
biodb.DEBUG[2024-07-13 16:04:32.795][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:32.796][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-07-13 16:04:32.798][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:32.799][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:32.801][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:32.807][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:32.808][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:32.809][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:32.810][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:32.819][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:32.823][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-13 16:04:32.824][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-13 16:04:32.827][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3".
biodb.TRACE[2024-07-13 16:04:32.916][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3 does not exist.
biodb.TRACE[2024-07-13 16:04:32.917][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-07-13 16:04:32.919][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-07-13 16:04:32.921][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18%3A226.4%5BMolecularWeight%5D&retmax=3).
biodb.DEBUG[2024-07-13 16:04:33.030][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-07-13 16:04:33.033][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content"
biodb.TRACE[2024-07-13 16:04:33.038][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.request"
biodb.DEBUG[2024-07-13 16:04:33.041][private$loadEntries] Creating entries from ids [3]: "171714625, 171714182, 171704398".
biodb.DEBUG[2024-07-13 16:04:33.042][conn$getEntryContent] Get PubChem Compound entry content(s) for 3 id(s)...
biodb.TRACE[2024-07-13 16:04:33.044][cch$loadFileContent] Trying to load 3 files from cache: [3]: "171714625, 171714182, 171704398".
biodb.TRACE[2024-07-13 16:04:33.046][cch$loadFileContent] file.exist = [3]: "FALSE, FALSE, FALSE".
biodb.TRACE[2024-07-13 16:04:33.047][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-13 16:04:33.048][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-07-13 16:04:33.050][conn$getEntryContent] 3 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-07-13 16:04:33.051][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-13 16:04:33.052][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-07-13 16:04:33.053][private$retrieveContents] Get entry content(s) for 3 id(s)...
biodb.DEBUG[2024-07-13 16:04:33.056][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171714625,171714182,171704398/XML".
biodb.DEBUG[2024-07-13 16:04:33.059][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-13 16:04:33.060][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-13 16:04:33.062][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171714625,171714182,171704398/XML".
biodb.TRACE[2024-07-13 16:04:33.252][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171714625,171714182,171704398/XML).
biodb.TRACE[2024-07-13 16:04:33.459][private$doSaveContentToFile] Saving to cache [3]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171714625.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171714182.xml, /Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171704398.xml"
biodb.DEBUG[2024-07-13 16:04:33.462][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-13 16:04:33.464][self$createEntryFromContent] Creating PubChem Compound entries from 3 content(s).
biodb.DEBUG[2024-07-13 16:04:33.466][self$createEntryFromContent] Parsing 3 PubChem Compound entries.
biodb.DEBUG[2024-07-13 16:04:33.467][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:33.469][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:33.470][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:33.476][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:33.477][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:33.478][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:33.479][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:33.483][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:33.484][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:33.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.486][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:33.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:33.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.493][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:33.494][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:33.496][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.497][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:33.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:33.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.503][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:33.505][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:33.506][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.507][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.509][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:33.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:33.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.514][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:33.515][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:33.516][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.518][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:33.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:33.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.524][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:33.526][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:33.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.528][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.530][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:33.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:33.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.535][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:33.536][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:33.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.538][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:33.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:33.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.545][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:33.547][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:33.548][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.549][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.551][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:33.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:33.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.556][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:33.557][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:33.558][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.559][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.561][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:33.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:33.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.566][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:33.568][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:33.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.570][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.571][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:33.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:33.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.577][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:33.578][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:33.579][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.581][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.582][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:33.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:33.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.587][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:33.589][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:33.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.591][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.593][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:33.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:33.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.598][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:33.599][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:33.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.601][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.603][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:33.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:33.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.608][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:33.610][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:33.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.612][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.614][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:33.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:33.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.619][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:33.620][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:33.621][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.622][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.624][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:33.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:33.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.629][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-07-13 16:04:33.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:33.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.634][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:33.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:33.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.639][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:33.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:33.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.644][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-07-13 16:04:33.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:33.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.650][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:33.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:33.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.655][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:33.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:33.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.660][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-07-13 16:04:33.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:33.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.665][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:33.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:33.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:33.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:33.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.675][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-07-13 16:04:33.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:33.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.680][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:33.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:33.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.685][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:33.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:33.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.690][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-07-13 16:04:33.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:33.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.695][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:33.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:33.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.700][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:33.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:33.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.705][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:33.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:33.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.710][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:33.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:33.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.727][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:33.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:33.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.733][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:33.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:33.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:33.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:33.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.743][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:33.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:33.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.748][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:33.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:33.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.753][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:33.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:33.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:33.758][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:33.759][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:33.760][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:33.767][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:33.768][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:33.769][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:33.770][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:33.773][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:33.775][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:33.776][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.777][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.779][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:33.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:33.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.784][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:33.785][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:33.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.788][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.789][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:33.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:33.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.794][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:33.796][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:33.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.798][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.800][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:33.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:33.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.805][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:33.806][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:33.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.809][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.810][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:33.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:33.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.815][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:33.817][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:33.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.819][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.821][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:33.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:33.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.826][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:33.827][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:33.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.830][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.831][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:33.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:33.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.836][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:33.838][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:33.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.840][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.842][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:33.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:33.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.847][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:33.848][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:33.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.851][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.852][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:33.854][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:33.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.857][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:33.859][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:33.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.861][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.863][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:33.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:33.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.868][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:33.869][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:33.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.872][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.873][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:33.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:33.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.879][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:33.880][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:33.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.882][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.884][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:33.885][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:33.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.888][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.889][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:33.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:33.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.895][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:33.896][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:33.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.898][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.900][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:33.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:33.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.905][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:33.906][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:33.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.909][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.910][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:33.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:33.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.916][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-07-13 16:04:33.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:33.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:33.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:33.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.927][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:33.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:33.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.932][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-07-13 16:04:33.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:33.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.937][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:33.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:33.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.942][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:33.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:33.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.947][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-07-13 16:04:33.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:33.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.952][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:33.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:33.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.957][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:33.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:33.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.962][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-07-13 16:04:33.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:33.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:33.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:33.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:33.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:33.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.977][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-07-13 16:04:33.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:33.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:33.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:33.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.988][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:33.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:33.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.993][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:33.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:33.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:33.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:33.998][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:33.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.003][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.008][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:34.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:34.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.013][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.018][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:34.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:34.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.023][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:34.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:34.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.028][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:34.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:34.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:34.034][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:34.035][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:34.036][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:34.042][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:34.043][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:34.044][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:34.045][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:34.049][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:34.050][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:34.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.052][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.054][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:34.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:34.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.059][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:34.060][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:34.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.063][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.064][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:34.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:34.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.070][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:34.071][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:34.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.073][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:34.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:34.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.080][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:34.081][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:34.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.084][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.085][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:34.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:34.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.090][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:34.092][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:34.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.094][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:34.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:34.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.101][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:34.102][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:34.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.105][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.106][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:34.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:34.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.111][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:34.113][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:34.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.115][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.117][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:34.118][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:34.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.122][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:34.123][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:34.124][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.126][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.127][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:34.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:34.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.132][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:34.134][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:34.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.136][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.138][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:34.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:34.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.143][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:34.144][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:34.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.146][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.154][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:34.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:34.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.160][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:34.162][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:34.163][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.164][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.166][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:34.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:34.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.171][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:34.172][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:34.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.174][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.176][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:34.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:34.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.181][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:34.183][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:34.184][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.185][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.187][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:34.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:34.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.192][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:34.193][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:34.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.195][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.197][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:34.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:34.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.202][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-07-13 16:04:34.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:34.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.207][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:34.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:34.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.212][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:34.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:34.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.218][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-07-13 16:04:34.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:34.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:34.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:34.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.228][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:34.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:34.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.233][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-07-13 16:04:34.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:34.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:34.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:34.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.243][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:34.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:34.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.246][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.248][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-07-13 16:04:34.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:34.250][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.251][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:34.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:34.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.257][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:34.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:34.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.263][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-07-13 16:04:34.264][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:34.265][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.266][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.268][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:34.269][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:34.270][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.273][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:34.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:34.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.278][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:34.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:34.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.283][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.288][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.293][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:34.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:34.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.298][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.303][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:34.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:34.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.308][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:34.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:34.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.313][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:34.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:34.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.318][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:34.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:34.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.323][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:34.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:34.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.328][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:34.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:34.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.333][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:34.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:34.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:34.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:34.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.343][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:34.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:34.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.348][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:34.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:34.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.353][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:34.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:34.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.358][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:34.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:34.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:34.363][self$createEntryFromContent] Accession numbers: 171714625, 171714182, 171704398.
biodb.DEBUG[2024-07-13 16:04:34.365][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:34.367][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:34.368][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:34.369][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:34.375][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:34.376][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:34.378][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:34.379][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:34.380][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.385][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.390][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:34.391][private$selectFields]
biodb.TRACE[2024-07-13 16:04:34.393][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:34.394][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:34.395][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:34.396][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.398][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.400][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.401][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.402][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.405][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.406][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:34.407][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:34.408][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.410][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.412][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.413][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:34.415][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.420][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.425][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.428][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.430][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171714625].
biodb.DEBUG[2024-07-13 16:04:34.431][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:34.432][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:34.434][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:34.440][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:34.441][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:34.442][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:34.444][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:34.445][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.450][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.455][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:34.457][private$selectFields]
biodb.TRACE[2024-07-13 16:04:34.458][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:34.459][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:34.460][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:34.461][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.463][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.464][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.465][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.467][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.468][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.470][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.472][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:34.473][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:34.474][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.475][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.477][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.478][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.479][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:34.480][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.486][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.491][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.496][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171714182].
biodb.DEBUG[2024-07-13 16:04:34.498][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:34.499][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:34.500][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:34.506][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:34.507][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:34.508][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:34.510][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:34.511][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.516][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.521][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:34.522][private$selectFields]
biodb.TRACE[2024-07-13 16:04:34.524][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:34.525][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:34.526][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:34.527][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.529][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.531][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.532][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.534][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.536][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.537][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:34.538][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:34.540][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.541][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.543][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.545][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:34.546][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.551][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.556][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.562][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171704398].
biodb.DEBUG[2024-07-13 16:04:34.563][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:34.564][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-07-13 16:04:34.597][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:34.599][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:34.600][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:34.606][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:34.607][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:34.608][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:34.610][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:34.618][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.03:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:34.622][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:34.623][cch$loadFileContent] Trying to load 1 files from cache: [1]: "9701d2e1a6b096cdfd56943877648611".
biodb.TRACE[2024-07-13 16:04:34.625][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:34.627][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/9701d2e1a6b096cdfd56943877648611.content".
biodb.DEBUG[2024-07-13 16:04:34.629][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:34.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:34.632][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:34.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:34.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:34.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:34.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:34.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:34.644][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.649][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.654][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:34.655][private$selectFields]
biodb.TRACE[2024-07-13 16:04:34.657][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:34.658][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:34.659][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:34.660][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.662][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.664][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.665][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.666][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.669][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.670][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:34.671][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:34.672][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.674][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.675][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.676][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.677][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:34.678][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.683][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.688][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.694][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171700947].
biodb.DEBUG[2024-07-13 16:04:34.695][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:34.696][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:34.697][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:34.703][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:34.704][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:34.705][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:34.707][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:34.708][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.713][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.718][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:34.720][private$selectFields]
biodb.TRACE[2024-07-13 16:04:34.721][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:34.722][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:34.723][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:34.724][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.726][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.728][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.729][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.731][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.733][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.734][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:34.735][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:34.737][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.738][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.740][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.742][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:34.743][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.747][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.748][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.752][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.753][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.758][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171699256].
biodb.DEBUG[2024-07-13 16:04:34.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:34.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:34.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:34.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:34.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:34.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:34.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:34.773][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.778][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.783][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:34.784][private$selectFields]
biodb.TRACE[2024-07-13 16:04:34.785][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:34.786][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:34.787][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:34.788][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.790][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.792][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.793][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.795][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.797][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.798][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:34.799][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:34.801][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.802][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.803][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.804][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.806][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:34.807][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.812][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.817][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.822][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171659133].
biodb.DEBUG[2024-07-13 16:04:34.823][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:34.824][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-07-13 16:04:34.827][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:34.828][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:34.829][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:34.835][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:34.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:34.837][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:34.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:34.847][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.98:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:34.851][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:34.852][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ce15c6e17e9ed97ba06e918ccdf7a5ba".
biodb.TRACE[2024-07-13 16:04:34.854][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:34.855][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ce15c6e17e9ed97ba06e918ccdf7a5ba.content".
biodb.DEBUG[2024-07-13 16:04:34.857][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:34.859][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:34.860][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:34.862][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:34.868][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:34.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:34.870][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:34.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:34.872][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.877][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.882][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:34.883][private$selectFields]
biodb.TRACE[2024-07-13 16:04:34.885][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:34.886][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:34.887][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:34.888][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.890][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.892][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.893][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.894][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.897][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.898][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:34.899][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:34.901][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.902][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.904][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.905][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:34.907][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.912][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.917][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.922][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171699478].
biodb.DEBUG[2024-07-13 16:04:34.923][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:34.924][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:34.925][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:34.932][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:34.933][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:34.934][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:34.935][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:34.936][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.941][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.946][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:34.948][private$selectFields]
biodb.TRACE[2024-07-13 16:04:34.949][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:34.950][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:34.951][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:34.952][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.954][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.956][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.957][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.959][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.961][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.962][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:34.963][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:34.965][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.966][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.967][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.968][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.969][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:34.971][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.976][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.981][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:34.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:34.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:34.986][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171662331].
biodb.DEBUG[2024-07-13 16:04:34.987][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:34.988][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:34.989][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:34.996][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:34.997][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:34.998][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:35.011][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:35.013][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.019][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.024][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.025][private$selectFields]
biodb.TRACE[2024-07-13 16:04:35.026][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:35.027][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:35.029][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.030][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.031][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.034][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.035][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.036][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.039][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.040][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.041][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.042][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.044][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.046][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.047][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:35.048][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.053][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.058][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.064][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171655526].
biodb.DEBUG[2024-07-13 16:04:35.065][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:35.066][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-07-13 16:04:35.092][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:35.093][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:35.094][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:35.100][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:35.101][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:35.102][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:35.103][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:35.111][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:35.115][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:35.117][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-07-13 16:04:35.119][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:35.120][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-07-13 16:04:35.123][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:35.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:35.126][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:35.127][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:35.133][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:35.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:35.135][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:35.136][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:35.137][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.143][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.148][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.149][private$selectFields]
biodb.TRACE[2024-07-13 16:04:35.150][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:35.151][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:35.152][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.154][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.155][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.157][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.158][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.160][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.162][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.163][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.165][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.166][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.167][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.170][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.171][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:35.172][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.182][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.187][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171632701].
biodb.DEBUG[2024-07-13 16:04:35.189][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:35.190][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:35.191][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:35.197][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:35.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:35.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:35.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:35.202][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.207][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.212][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.213][private$selectFields]
biodb.TRACE[2024-07-13 16:04:35.214][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:35.215][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:35.216][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.217][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.219][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.221][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.222][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.224][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.226][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.227][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.229][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.230][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.231][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.233][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.235][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:35.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.241][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.246][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.251][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171615080].
biodb.DEBUG[2024-07-13 16:04:35.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:35.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:35.255][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:35.261][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:35.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:35.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:35.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:35.265][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.270][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.275][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.277][private$selectFields]
biodb.TRACE[2024-07-13 16:04:35.278][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:35.279][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:35.280][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.281][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.283][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.285][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.286][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.287][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.290][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.291][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.292][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.293][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.295][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.297][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.298][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:35.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.305][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.310][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.315][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171615005].
biodb.DEBUG[2024-07-13 16:04:35.316][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:35.317][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-07-13 16:04:35.320][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:35.321][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:35.322][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:35.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:35.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:35.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:35.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:35.339][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:35.344][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:35.345][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-07-13 16:04:35.347][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:35.348][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-07-13 16:04:35.350][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:35.352][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:35.353][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:35.355][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:35.361][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:35.362][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:35.363][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:35.364][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:35.365][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.370][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.375][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.377][private$selectFields]
biodb.TRACE[2024-07-13 16:04:35.378][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:35.379][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:35.380][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.381][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.383][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.384][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.385][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.386][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.388][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.390][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.391][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.392][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.394][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.395][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.396][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.397][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.398][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:35.400][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.401][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.405][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.406][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.410][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.411][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.415][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171699478].
biodb.DEBUG[2024-07-13 16:04:35.416][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:35.417][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:35.418][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:35.425][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:35.426][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:35.427][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:35.428][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:35.429][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.432][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.441][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.447][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.449][private$selectFields]
biodb.TRACE[2024-07-13 16:04:35.450][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:35.451][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:35.452][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.454][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.455][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.457][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.459][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.460][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.463][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.464][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.465][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.466][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.468][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.469][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.470][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.471][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:35.473][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.478][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.483][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.489][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171652018].
biodb.DEBUG[2024-07-13 16:04:35.490][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:35.491][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:35.493][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:35.499][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:35.501][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:35.502][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:35.503][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:35.505][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.510][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.515][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.516][private$selectFields]
biodb.TRACE[2024-07-13 16:04:35.517][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:35.518][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:35.519][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.521][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.522][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.524][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.525][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.527][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.529][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.530][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.532][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.533][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.534][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.536][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.538][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:35.539][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.544][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.549][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.554][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171652005].
biodb.DEBUG[2024-07-13 16:04:35.555][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:35.556][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-07-13 16:04:35.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:35.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:35.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:35.590][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:35.592][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:35.593][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:35.594][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:35.602][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.45[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:35.606][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:35.608][cch$loadFileContent] Trying to load 1 files from cache: [1]: "897c6c1cf86bb233833a030ee6928dbf".
biodb.TRACE[2024-07-13 16:04:35.609][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:35.611][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/897c6c1cf86bb233833a030ee6928dbf.content".
biodb.DEBUG[2024-07-13 16:04:35.613][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:35.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:35.616][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:35.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:35.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:35.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:35.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:35.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:35.629][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.638][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.640][private$selectFields]
biodb.TRACE[2024-07-13 16:04:35.641][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:35.642][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:35.643][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.644][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.646][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.648][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.649][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.651][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.653][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.655][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.656][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.657][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.658][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.661][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.662][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:35.663][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.668][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.673][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.679][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171715183].
biodb.DEBUG[2024-07-13 16:04:35.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:35.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:35.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:35.689][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:35.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:35.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:35.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:35.694][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.699][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.704][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.705][private$selectFields]
biodb.TRACE[2024-07-13 16:04:35.706][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:35.707][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:35.708][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.710][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.711][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.713][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.715][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.716][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.719][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.720][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.721][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.722][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.724][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.726][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.728][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:35.729][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.734][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.739][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.744][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171715181].
biodb.DEBUG[2024-07-13 16:04:35.746][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:35.747][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:35.748][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:35.754][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:35.755][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:35.756][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:35.758][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:35.759][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.764][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.769][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.771][private$selectFields]
biodb.TRACE[2024-07-13 16:04:35.772][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:35.773][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:35.774][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.775][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.777][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.779][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.780][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.782][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.784][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.785][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.787][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.788][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.789][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.790][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.791][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.793][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:35.794][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.799][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.804][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.809][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171706621].
biodb.DEBUG[2024-07-13 16:04:35.810][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:35.811][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-07-13 16:04:35.814][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:35.815][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:35.816][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:35.822][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:35.823][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:35.824][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:35.825][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:35.833][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.4[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:35.837][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:35.839][cch$loadFileContent] Trying to load 1 files from cache: [1]: "56a93d3214bbb5417ad13002a40518e8".
biodb.TRACE[2024-07-13 16:04:35.841][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:35.842][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/56a93d3214bbb5417ad13002a40518e8.content".
biodb.DEBUG[2024-07-13 16:04:35.844][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:35.846][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:35.847][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:35.848][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:35.854][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:35.856][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:35.857][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:35.858][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:35.859][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.864][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.875][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.876][private$selectFields]
biodb.TRACE[2024-07-13 16:04:35.878][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:35.879][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:35.880][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.882][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.883][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.886][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.887][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.888][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.891][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.892][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.893][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.894][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.896][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.898][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.899][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:35.900][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.905][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.910][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.916][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171714625].
biodb.DEBUG[2024-07-13 16:04:35.917][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:35.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:35.919][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:35.925][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:35.927][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:35.928][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:35.929][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:35.930][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.935][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.940][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.941][private$selectFields]
biodb.TRACE[2024-07-13 16:04:35.943][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:35.944][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:35.945][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.946][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.948][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.950][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.951][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.953][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.955][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.956][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.957][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:35.959][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.960][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.962][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.963][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:35.965][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.970][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.975][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:35.980][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171714182].
biodb.DEBUG[2024-07-13 16:04:35.982][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:35.983][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:35.984][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:35.990][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:35.991][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:35.992][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:35.993][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:35.995][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:35.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:35.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.000][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:36.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:36.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.005][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:36.006][private$selectFields]
biodb.TRACE[2024-07-13 16:04:36.007][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:36.008][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:36.009][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:36.011][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:36.012][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:36.013][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.014][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.016][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:36.017][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:36.018][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.019][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.021][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:36.022][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:36.023][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:36.024][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:36.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.027][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.028][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:36.029][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:36.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:36.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.034][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:36.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:36.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.039][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:36.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:36.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.045][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171704398].
biodb.DEBUG[2024-07-13 16:04:36.046][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:36.047][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-13 16:04:36.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:36.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:36.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.076][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:36.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:36.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.081][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:36.082][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:36.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.086][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:36.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:36.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.091][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:36.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:36.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.096][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:36.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:36.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.101][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:36.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:36.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.105][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:36.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:36.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:36.113][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:36.114][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:36.115][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:36.121][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:36.122][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:36.124][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:36.125][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:36.133][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:36.137][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-13 16:04:36.138][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-13 16:04:36.141][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-07-13 16:04:36.228][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-07-13 16:04:36.229][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-07-13 16:04:36.231][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-07-13 16:04:36.233][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306%3A204.13358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-07-13 16:04:36.581][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-07-13 16:04:36.583][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content"
biodb.TRACE[2024-07-13 16:04:36.589][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.request"
biodb.DEBUG[2024-07-13 16:04:36.591][private$loadEntries] Creating entries from ids [1]: "171713623".
biodb.DEBUG[2024-07-13 16:04:36.593][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-13 16:04:36.595][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171713623".
biodb.TRACE[2024-07-13 16:04:36.596][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-13 16:04:36.597][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-13 16:04:36.599][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-07-13 16:04:36.600][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-07-13 16:04:36.601][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-13 16:04:36.602][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-07-13 16:04:36.604][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-13 16:04:36.606][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171713623/XML".
biodb.DEBUG[2024-07-13 16:04:36.609][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-13 16:04:36.610][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-13 16:04:36.612][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171713623/XML".
biodb.TRACE[2024-07-13 16:04:36.718][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171713623/XML).
biodb.TRACE[2024-07-13 16:04:36.842][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171713623.xml"
biodb.DEBUG[2024-07-13 16:04:36.844][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-13 16:04:36.846][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-07-13 16:04:36.847][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-07-13 16:04:36.849][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:36.850][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:36.851][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:36.857][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:36.859][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:36.860][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:36.861][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:36.864][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:36.865][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:36.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.868][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:36.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:36.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.875][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:36.876][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:36.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.878][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:36.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:36.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.885][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:36.886][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:36.887][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.889][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:36.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:36.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.895][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:36.897][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:36.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.899][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:36.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:36.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.906][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:36.907][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:36.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.909][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.911][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:36.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:36.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.916][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:36.918][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:36.919][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.920][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.922][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:36.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:36.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.927][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:36.928][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:36.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.931][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.932][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:36.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:36.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.937][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:36.939][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:36.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.941][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.943][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:36.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:36.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.948][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:36.949][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:36.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.951][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.953][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:36.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:36.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.970][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:36.971][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:36.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.974][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.976][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:36.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:36.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.981][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:36.982][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:36.984][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.985][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.986][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:36.988][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:36.989][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.990][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.992][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:36.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:36.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:36.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:36.997][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:36.998][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:36.999][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.000][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.002][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:37.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:37.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.007][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:37.009][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:37.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.011][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.013][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:37.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:37.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.018][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-07-13 16:04:37.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:37.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.023][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:37.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:37.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.028][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:37.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:37.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.032][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.033][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-07-13 16:04:37.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:37.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.037][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.038][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:37.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:37.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.042][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.043][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:37.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:37.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.047][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.048][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-07-13 16:04:37.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:37.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.053][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:37.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:37.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.058][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:37.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:37.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.063][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-07-13 16:04:37.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:37.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.068][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:37.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:37.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.073][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:37.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:37.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.078][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-07-13 16:04:37.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:37.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.083][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:37.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:37.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.088][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:37.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:37.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.093][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:37.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:37.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.099][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.100][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.103][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.104][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.105][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.108][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:37.110][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:37.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.113][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.114][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.115][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.116][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.118][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.119][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:37.120][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:37.122][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.123][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.124][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:37.125][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:37.127][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.128][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.129][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:37.130][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:37.132][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.133][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.134][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:37.136][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:37.137][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.138][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.139][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:37.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:37.142][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.143][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.144][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:37.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:37.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:37.149][self$createEntryFromContent] Accession numbers: 171713623.
biodb.DEBUG[2024-07-13 16:04:37.151][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:37.153][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:37.154][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:37.155][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:37.161][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:37.162][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:37.164][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:37.165][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:37.166][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.171][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.176][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:37.177][private$selectFields]
biodb.TRACE[2024-07-13 16:04:37.178][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:37.180][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:37.181][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:37.182][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.184][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.186][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.187][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.188][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.191][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.192][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:37.193][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:37.195][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.196][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.198][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.199][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:37.201][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.206][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.211][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.216][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171715183].
biodb.DEBUG[2024-07-13 16:04:37.218][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:37.219][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:37.220][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:37.226][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:37.227][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:37.228][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:37.229][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:37.231][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.241][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:37.242][private$selectFields]
biodb.TRACE[2024-07-13 16:04:37.243][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:37.244][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:37.246][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:37.247][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.248][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.249][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.251][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.252][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.253][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.254][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.256][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.257][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:37.258][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:37.259][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.261][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.263][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.264][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:37.266][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.271][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.276][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.281][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171715181].
biodb.DEBUG[2024-07-13 16:04:37.283][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:37.284][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:37.285][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:37.291][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:37.292][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:37.293][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:37.295][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:37.296][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.301][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.306][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:37.308][private$selectFields]
biodb.TRACE[2024-07-13 16:04:37.309][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:37.310][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:37.311][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:37.313][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.314][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.317][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.318][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.319][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.322][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.323][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:37.324][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:37.326][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.327][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.330][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.331][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:37.332][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.334][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.335][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.336][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.338][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.339][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.340][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.343][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.344][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.349][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171713623].
biodb.DEBUG[2024-07-13 16:04:37.350][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:37.351][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-07-13 16:04:37.354][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:37.355][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:37.357][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:37.363][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:37.364][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:37.365][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:37.366][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:37.375][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:37.379][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-13 16:04:37.381][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-13 16:04:37.383][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-07-13 16:04:37.472][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-07-13 16:04:37.473][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-07-13 16:04:37.475][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-07-13 16:04:37.477][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142%3A226.06897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-07-13 16:04:37.591][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-07-13 16:04:37.595][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content"
biodb.TRACE[2024-07-13 16:04:37.601][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.request"
biodb.DEBUG[2024-07-13 16:04:37.605][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:37.607][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:37.608][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:37.609][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:37.615][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:37.617][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:37.618][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:37.619][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:37.620][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.625][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.631][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:37.632][private$selectFields]
biodb.TRACE[2024-07-13 16:04:37.633][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:37.634][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:37.635][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:37.637][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.638][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.640][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.642][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.643][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.646][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.647][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:37.648][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:37.649][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.651][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.653][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.655][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:37.656][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.661][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.666][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.672][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171714182].
biodb.DEBUG[2024-07-13 16:04:37.673][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:37.674][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:37.675][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:37.681][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:37.682][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:37.683][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:37.685][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:37.686][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.691][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.696][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:37.697][private$selectFields]
biodb.TRACE[2024-07-13 16:04:37.698][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:37.700][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:37.701][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:37.702][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.703][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.706][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.707][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.708][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.710][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.711][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.712][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:37.713][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:37.715][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.716][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.718][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.719][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:37.721][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.731][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.737][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171702946].
biodb.DEBUG[2024-07-13 16:04:37.738][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:37.739][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:37.740][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:37.746][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:37.747][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:37.748][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:37.749][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:37.751][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.756][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.761][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:37.762][private$selectFields]
biodb.TRACE[2024-07-13 16:04:37.763][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:37.764][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:37.765][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:37.767][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.768][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.770][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.772][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.773][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.775][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.777][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:37.778][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:37.779][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.780][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.783][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.784][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:37.785][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.790][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.795][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.800][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171699478].
biodb.DEBUG[2024-07-13 16:04:37.802][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:37.803][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-07-13 16:04:37.828][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:37.829][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:37.830][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:37.836][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:37.838][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:37.839][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:37.840][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:37.848][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:37.852][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:37.854][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-07-13 16:04:37.856][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:37.857][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-07-13 16:04:37.859][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:37.861][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:37.862][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:37.863][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:37.869][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:37.871][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:37.872][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:37.873][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:37.874][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.879][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.884][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:37.885][private$selectFields]
biodb.TRACE[2024-07-13 16:04:37.886][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:37.888][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:37.889][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:37.890][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.891][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.893][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.894][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.895][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.896][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.897][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.899][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.900][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:37.901][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:37.902][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.904][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.906][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.907][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:37.908][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.913][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.918][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.923][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171715183].
biodb.DEBUG[2024-07-13 16:04:37.925][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:37.926][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:37.927][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:37.933][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:37.934][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:37.935][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:37.936][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:37.938][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.943][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.947][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:37.949][private$selectFields]
biodb.TRACE[2024-07-13 16:04:37.950][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:37.951][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:37.952][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:37.953][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.955][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.957][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.958][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.960][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.962][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.963][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:37.964][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:37.965][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.967][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.969][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.970][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:37.972][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.976][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.981][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.983][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:37.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:37.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:37.987][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171715181].
biodb.DEBUG[2024-07-13 16:04:37.988][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:37.989][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:37.990][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:37.997][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:37.998][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:37.999][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:38.000][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:38.002][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.007][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.012][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:38.013][private$selectFields]
biodb.TRACE[2024-07-13 16:04:38.014][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:38.015][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:38.016][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:38.024][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.026][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.028][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.030][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.031][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.033][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.034][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.035][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:38.037][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:38.038][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.039][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.042][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.043][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:38.044][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.049][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.054][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.060][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171699432].
biodb.DEBUG[2024-07-13 16:04:38.061][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:38.062][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-07-13 16:04:38.065][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:38.066][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:38.067][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:38.073][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:38.075][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:38.076][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:38.077][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:38.085][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:38.089][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:38.091][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-07-13 16:04:38.092][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:38.094][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-07-13 16:04:38.096][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:38.098][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:38.099][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:38.100][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:38.106][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:38.107][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:38.108][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:38.109][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:38.111][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.116][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.120][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:38.121][private$selectFields]
biodb.TRACE[2024-07-13 16:04:38.123][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:38.124][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:38.125][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:38.126][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.127][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.129][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.130][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.131][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.132][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.133][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.134][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.136][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:38.137][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:38.138][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.139][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.142][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.143][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:38.144][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.145][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.148][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.149][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.150][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.151][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.154][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.155][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.156][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.159][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171702946].
biodb.DEBUG[2024-07-13 16:04:38.160][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:38.162][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:38.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:38.169][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:38.170][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:38.171][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:38.172][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:38.174][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.178][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.183][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:38.184][private$selectFields]
biodb.TRACE[2024-07-13 16:04:38.186][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:38.187][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:38.188][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:38.189][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.190][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.193][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.194][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.195][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.198][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.199][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:38.200][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:38.201][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.203][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.205][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.206][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:38.207][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.212][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.217][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.223][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171699478].
biodb.DEBUG[2024-07-13 16:04:38.224][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:38.225][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:38.226][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:38.232][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:38.233][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:38.234][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:38.235][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:38.237][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.242][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.247][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:38.248][private$selectFields]
biodb.TRACE[2024-07-13 16:04:38.249][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:38.250][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:38.251][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:38.253][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.254][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.256][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.257][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.259][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.261][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.262][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:38.264][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:38.265][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.266][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.268][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.270][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:38.271][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.276][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.286][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171651179].
biodb.DEBUG[2024-07-13 16:04:38.287][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:38.288][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-07-13 16:04:38.314][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:38.315][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:38.316][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:38.322][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:38.324][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:38.325][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:38.326][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:38.334][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:38.338][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-13 16:04:38.340][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-13 16:04:38.342][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-07-13 16:04:38.431][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-07-13 16:04:38.432][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-07-13 16:04:38.434][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-07-13 16:04:38.436][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306%3A204.33358306%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-07-13 16:04:38.546][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-07-13 16:04:38.548][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content"
biodb.TRACE[2024-07-13 16:04:38.553][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.request"
biodb.DEBUG[2024-07-13 16:04:38.556][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:38.558][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:38.559][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:38.560][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:38.566][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:38.568][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:38.569][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:38.570][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:38.571][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.576][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.581][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:38.582][private$selectFields]
biodb.TRACE[2024-07-13 16:04:38.583][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:38.584][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:38.586][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:38.587][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.588][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.589][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.590][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.592][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.593][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.595][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.597][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:38.598][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:38.599][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.600][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.602][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.604][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:38.605][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.610][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.615][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.620][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171715183].
biodb.DEBUG[2024-07-13 16:04:38.621][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:38.622][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:38.623][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:38.629][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:38.630][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:38.632][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:38.633][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:38.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.645][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.648][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.652][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:38.653][private$selectFields]
biodb.TRACE[2024-07-13 16:04:38.654][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:38.656][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:38.657][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:38.658][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.660][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.662][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.663][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.664][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.667][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.668][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:38.669][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:38.670][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.672][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.674][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.675][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:38.677][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.681][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.685][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.686][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.690][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.692][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171715181].
biodb.DEBUG[2024-07-13 16:04:38.693][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:38.694][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:38.695][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:38.701][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:38.702][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:38.703][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:38.705][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:38.706][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.711][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.716][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:38.717][private$selectFields]
biodb.TRACE[2024-07-13 16:04:38.718][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:38.719][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:38.720][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:38.722][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.723][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.725][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.727][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.728][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.730][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.731][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:38.733][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:38.734][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.735][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.737][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.739][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:38.740][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.745][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.749][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:38.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:38.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:38.755][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171706621].
biodb.DEBUG[2024-07-13 16:04:38.756][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:38.757][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-07-13 16:04:38.759][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:38.761][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:38.762][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:38.768][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:38.769][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:38.770][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:38.771][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:38.780][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:38.784][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-13 16:04:38.785][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-13 16:04:38.788][private$doSendRequestOnce] Sent URL is "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3".
biodb.TRACE[2024-07-13 16:04:38.876][doesRCurlRequestUrlExist] According to RCurl, URL https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3 does not exist.
biodb.TRACE[2024-07-13 16:04:38.877][getUrlRequestResult] Using base::url() for sending request.
biodb.DEBUG[2024-07-13 16:04:38.879][getUrlRequestResult] URL "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3" does not exist according to RCurl. That may happen with some protocol misunderstanding. Trying with base::url().
biodb.TRACE[2024-07-13 16:04:38.881][getBaseUrlRequestResult] Using base::url() for sending request (https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142%3A226.26897142%5BMonoisotopicMass%5D&retmax=3).
biodb.DEBUG[2024-07-13 16:04:38.991][self$getBiodb()$getRequestScheduler( ...] Saving content of request to cache.
biodb.TRACE[2024-07-13 16:04:38.994][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content"
biodb.TRACE[2024-07-13 16:04:38.999][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.request"
biodb.DEBUG[2024-07-13 16:04:39.002][private$loadEntries] Creating entries from ids [1]: "171703924".
biodb.DEBUG[2024-07-13 16:04:39.003][conn$getEntryContent] Get PubChem Compound entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-13 16:04:39.005][cch$loadFileContent] Trying to load 1 files from cache: [1]: "171703924".
biodb.TRACE[2024-07-13 16:04:39.006][cch$loadFileContent] file.exist = [1]: "FALSE".
biodb.TRACE[2024-07-13 16:04:39.008][loadFileContents] Loaded 0 files from cache: none.
biodb.DEBUG[2024-07-13 16:04:39.009][conn$getEntryContent] 0 PubChem Compound entry content(s) loaded from cache.
biodb.DEBUG[2024-07-13 16:04:39.010][conn$getEntryContent] 1 entry content(s) need to be fetched from PubChem Compound database "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-07-13 16:04:39.011][conn$getEntryContent] dwnld.chunk.size=NA
biodb.DEBUG[2024-07-13 16:04:39.013][conn$getEntryContent] 1 chunk(s) to download.
biodb.INFO [2024-07-13 16:04:39.014][private$retrieveContents] Get entry content(s) for 1 id(s)...
biodb.DEBUG[2024-07-13 16:04:39.016][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171703924/XML".
biodb.DEBUG[2024-07-13 16:04:39.019][private$doSendRequestLoop] Request header is: "".
biodb.DEBUG[2024-07-13 16:04:39.020][private$doSendRequestLoop] Request body is "".
biodb.TRACE[2024-07-13 16:04:39.022][private$doSendRequestOnce] Sent URL is "https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171703924/XML".
biodb.TRACE[2024-07-13 16:04:39.127][getRCurlRequestResult] Using RCurl package for sending request (https://pubchem.ncbi.nlm.nih.gov/rest/pug/compound/cid/171703924/XML).
biodb.TRACE[2024-07-13 16:04:39.284][private$doSaveContentToFile] Saving to cache [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/171703924.xml"
biodb.DEBUG[2024-07-13 16:04:39.314][conn$getEntryContent] Now 0 id(s) left to be retrieved...
biodb.DEBUG[2024-07-13 16:04:39.316][self$createEntryFromContent] Creating PubChem Compound entries from 1 content(s).
biodb.DEBUG[2024-07-13 16:04:39.317][self$createEntryFromContent] Parsing 1 PubChem Compound entries.
biodb.DEBUG[2024-07-13 16:04:39.319][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:39.320][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:39.321][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:39.328][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:39.329][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:39.330][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:39.331][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:39.334][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:39.336][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:39.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.338][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.340][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:39.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:39.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.345][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:39.346][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:39.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.348][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:39.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:39.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.355][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:39.356][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:39.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.359][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.361][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:39.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:39.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.366][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:39.367][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:39.368][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.369][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.371][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:39.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:39.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.376][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:39.377][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:39.379][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.380][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.381][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:39.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:39.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.386][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:39.388][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:39.389][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.390][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.392][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:39.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:39.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.396][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.397][ef$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:39.398][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:39.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.401][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.402][self$getBiodb()$getEntryFields()$get] Asked field names are: exact.mass.
biodb.TRACE[2024-07-13 16:04:39.404][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:39.405][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.407][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:39.409][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:39.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.411][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.413][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:39.414][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:39.415][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.418][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:39.419][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:39.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.421][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.423][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:39.424][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:39.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.428][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:39.429][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:39.430][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.432][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.433][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:39.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:39.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.438][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:39.440][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:39.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.442][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.443][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:39.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:39.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.448][ef$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:39.450][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:39.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.452][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.454][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.weight.
biodb.TRACE[2024-07-13 16:04:39.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:39.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.459][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:39.460][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:39.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.462][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.464][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:39.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:39.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.468][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.469][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:39.470][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:39.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.473][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.474][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:39.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:39.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.479][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.PREF.
biodb.TRACE[2024-07-13 16:04:39.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:39.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.484][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:39.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:39.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.489][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:39.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:39.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.494][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.ALLOWED.
biodb.TRACE[2024-07-13 16:04:39.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:39.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.499][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:39.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:39.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.504][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:39.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:39.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.509][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.TRAD.
biodb.TRACE[2024-07-13 16:04:39.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:39.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.514][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:39.516][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:39.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.519][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:39.521][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:39.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.524][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.SYST.
biodb.TRACE[2024-07-13 16:04:39.526][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:39.527][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.529][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:39.531][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:39.532][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:39.536][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:39.537][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.538][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.539][self$getBiodb()$getEntryFields()$get] Asked field names are: COMP.IUPAC.NAME.CAS.
biodb.TRACE[2024-07-13 16:04:39.541][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:39.542][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.543][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.555][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:39.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:39.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.561][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:39.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:39.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.567][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:39.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:39.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.572][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.577][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.582][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:39.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:39.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.587][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.590][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.592][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:39.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:39.595][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.597][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:39.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:39.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.602][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:39.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:39.605][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.607][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:39.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:39.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.613][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:39.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:39.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.618][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:39.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:39.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:39.623][self$createEntryFromContent] Accession numbers: 171703924.
biodb.DEBUG[2024-07-13 16:04:39.624][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:39.626][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:39.627][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:39.628][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:39.634][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:39.636][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:39.637][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:39.638][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:39.639][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.644][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.649][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:39.651][private$selectFields]
biodb.TRACE[2024-07-13 16:04:39.652][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:39.653][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:39.654][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:39.655][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.657][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.659][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.660][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.662][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.664][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.665][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:39.666][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:39.668][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.669][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.670][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.671][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.672][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:39.674][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.679][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.684][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.689][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171714625].
biodb.DEBUG[2024-07-13 16:04:39.691][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:39.692][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:39.693][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:39.699][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:39.701][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:39.702][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:39.703][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:39.704][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.709][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.714][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:39.715][private$selectFields]
biodb.TRACE[2024-07-13 16:04:39.717][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:39.718][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:39.719][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:39.720][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.722][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.723][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.724][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.725][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.727][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.728][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.729][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.730][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:39.732][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:39.733][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.734][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.736][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.738][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:39.739][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.744][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.749][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.754][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171704398].
biodb.DEBUG[2024-07-13 16:04:39.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:39.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:39.758][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:39.764][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:39.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:39.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:39.768][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:39.769][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.774][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.779][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:39.780][private$selectFields]
biodb.TRACE[2024-07-13 16:04:39.782][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:39.783][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:39.784][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:39.785][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.787][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.788][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.789][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.790][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.791][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.793][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.794][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.795][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:39.796][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:39.798][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.799][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.800][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.802][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.803][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:39.804][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.806][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.811][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.815][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.821][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171703924].
biodb.DEBUG[2024-07-13 16:04:39.822][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:39.823][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-07-13 16:04:39.851][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:39.852][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:39.853][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:39.860][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:39.861][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:39.862][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:39.863][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:39.872][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=203.91358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:39.877][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:39.878][cch$loadFileContent] Trying to load 1 files from cache: [1]: "8ad32143f99567438eba281a371befbc".
biodb.TRACE[2024-07-13 16:04:39.880][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:39.882][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/8ad32143f99567438eba281a371befbc.content".
biodb.DEBUG[2024-07-13 16:04:39.884][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:39.886][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:39.887][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:39.888][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:39.894][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:39.895][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:39.896][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:39.897][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:39.899][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.904][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.909][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:39.910][private$selectFields]
biodb.TRACE[2024-07-13 16:04:39.911][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:39.912][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:39.914][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:39.915][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.916][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.917][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.919][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.920][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.921][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.922][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.924][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.925][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:39.926][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:39.927][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.929][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.931][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.932][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:39.933][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.938][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.943][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.949][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171715183].
biodb.DEBUG[2024-07-13 16:04:39.950][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:39.951][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:39.952][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:39.958][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:39.960][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:39.961][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:39.962][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:39.963][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.969][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.974][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:39.975][private$selectFields]
biodb.TRACE[2024-07-13 16:04:39.976][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:39.977][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:39.978][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:39.980][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.981][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.989][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.991][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.992][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:39.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:39.995][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:39.996][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:39.998][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:39.999][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.000][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.002][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.003][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.004][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:40.005][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.015][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.021][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171715181].
biodb.DEBUG[2024-07-13 16:04:40.022][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:40.023][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:40.024][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:40.030][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:40.031][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:40.033][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:40.034][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:40.035][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.040][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.045][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.047][private$selectFields]
biodb.TRACE[2024-07-13 16:04:40.048][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:40.049][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:40.050][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.051][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.053][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.054][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.055][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.056][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.058][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.059][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.060][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.061][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.063][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.064][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.065][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.068][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.069][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:40.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.075][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.077][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.080][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.085][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171713623].
biodb.DEBUG[2024-07-13 16:04:40.087][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:40.088][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-07-13 16:04:40.090][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:40.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:40.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:40.099][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:40.100][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:40.101][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:40.102][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:40.110][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=225.84897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:40.114][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:40.116][cch$loadFileContent] Trying to load 1 files from cache: [1]: "ead2a4c6d4c972bfbf7c3e8a0e8299c8".
biodb.TRACE[2024-07-13 16:04:40.118][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:40.119][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/ead2a4c6d4c972bfbf7c3e8a0e8299c8.content".
biodb.DEBUG[2024-07-13 16:04:40.122][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:40.124][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:40.125][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:40.126][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:40.132][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:40.133][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:40.134][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:40.135][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:40.137][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.142][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.147][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.148][private$selectFields]
biodb.TRACE[2024-07-13 16:04:40.149][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:40.150][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:40.152][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.153][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.154][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.155][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.157][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.158][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.159][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.160][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.162][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.163][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.164][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.165][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.167][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.169][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.170][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:40.171][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.177][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.181][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.187][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171714182].
biodb.DEBUG[2024-07-13 16:04:40.188][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:40.189][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:40.190][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:40.196][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:40.198][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:40.199][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:40.200][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:40.201][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.206][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.211][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.212][private$selectFields]
biodb.TRACE[2024-07-13 16:04:40.214][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:40.215][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:40.216][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.217][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.218][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.220][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.221][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.222][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.223][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.225][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.226][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.227][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.228][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.229][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.231][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.233][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.234][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:40.236][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.241][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.246][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.251][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171702946].
biodb.DEBUG[2024-07-13 16:04:40.252][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:40.253][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:40.254][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:40.260][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:40.262][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:40.263][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:40.264][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:40.265][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.270][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.275][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.276][private$selectFields]
biodb.TRACE[2024-07-13 16:04:40.278][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:40.279][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:40.280][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.281][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.283][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.285][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.286][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.288][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.290][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.291][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.292][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.294][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.295][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.297][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.298][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:40.300][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.305][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.310][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.315][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171699478].
biodb.DEBUG[2024-07-13 16:04:40.316][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:40.318][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-07-13 16:04:40.343][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:40.344][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:40.346][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:40.352][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:40.353][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:40.354][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:40.355][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:40.363][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:40.368][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:40.369][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-07-13 16:04:40.371][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:40.372][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-07-13 16:04:40.374][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:40.376][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:40.378][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:40.379][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:40.385][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:40.386][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:40.387][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:40.388][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:40.390][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.395][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.400][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.401][private$selectFields]
biodb.TRACE[2024-07-13 16:04:40.402][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:40.403][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:40.404][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.406][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.407][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.409][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.411][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.418][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.421][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.422][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.424][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.425][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.426][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.429][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.430][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:40.431][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.436][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.441][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.447][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171715183].
biodb.DEBUG[2024-07-13 16:04:40.448][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:40.449][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:40.450][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:40.457][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:40.458][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:40.459][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:40.460][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:40.461][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.466][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.471][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.473][private$selectFields]
biodb.TRACE[2024-07-13 16:04:40.474][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:40.475][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:40.476][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.478][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.479][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.481][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.483][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.484][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.486][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.488][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.489][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.490][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.491][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.494][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.495][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:40.496][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.501][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.506][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.512][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171715181].
biodb.DEBUG[2024-07-13 16:04:40.513][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:40.514][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:40.515][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:40.521][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:40.523][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:40.524][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:40.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:40.526][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.531][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.536][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.538][private$selectFields]
biodb.TRACE[2024-07-13 16:04:40.539][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:40.540][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:40.541][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.542][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.544][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.546][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.547][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.549][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.551][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.552][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.554][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.555][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.556][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.559][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.560][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:40.561][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.566][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.571][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.577][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171699432].
biodb.DEBUG[2024-07-13 16:04:40.578][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:40.579][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-07-13 16:04:40.582][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:40.583][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:40.584][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:40.590][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:40.591][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:40.592][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:40.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:40.602][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:40.606][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:40.608][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-07-13 16:04:40.609][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:40.611][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-07-13 16:04:40.613][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:40.615][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:40.616][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:40.617][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:40.624][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:40.625][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:40.626][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:40.627][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:40.629][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.634][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.639][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.640][private$selectFields]
biodb.TRACE[2024-07-13 16:04:40.641][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:40.642][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:40.643][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.645][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.646][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.649][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.650][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.651][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.654][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.655][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.656][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.658][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.659][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.660][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.661][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.662][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:40.664][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.669][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.674][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.679][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171702946].
biodb.DEBUG[2024-07-13 16:04:40.680][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:40.681][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:40.682][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:40.688][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:40.690][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:40.691][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:40.692][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:40.693][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.698][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.703][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.704][private$selectFields]
biodb.TRACE[2024-07-13 16:04:40.705][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:40.706][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:40.708][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.709][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.710][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.713][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.714][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.715][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.717][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.719][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.720][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.721][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.722][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.725][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.726][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:40.727][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.732][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.737][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.742][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171699478].
biodb.DEBUG[2024-07-13 16:04:40.744][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:40.745][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:40.746][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:40.752][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:40.753][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:40.754][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:40.755][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:40.757][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.762][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.767][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.768][private$selectFields]
biodb.TRACE[2024-07-13 16:04:40.769][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:40.770][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:40.771][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.773][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.774][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.776][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.778][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.779][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.781][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.783][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.784][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.785][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.786][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.789][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.790][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:40.791][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.796][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.801][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.807][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171651179].
biodb.DEBUG[2024-07-13 16:04:40.808][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:40.809][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-07-13 16:04:40.835][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:40.836][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:40.837][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:40.851][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:40.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:40.853][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:40.855][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:40.863][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.33358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:40.867][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:40.869][cch$loadFileContent] Trying to load 1 files from cache: [1]: "93b38cb571769a97b3321f7f5a86241a".
biodb.TRACE[2024-07-13 16:04:40.871][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:40.872][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/93b38cb571769a97b3321f7f5a86241a.content".
biodb.DEBUG[2024-07-13 16:04:40.875][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:40.877][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:40.878][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:40.879][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:40.885][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:40.886][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:40.887][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:40.888][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:40.890][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.895][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.900][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.901][private$selectFields]
biodb.TRACE[2024-07-13 16:04:40.903][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:40.904][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:40.905][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.906][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.908][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.910][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.911][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.913][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.914][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.915][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.916][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.918][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.919][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.920][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.923][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.924][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:40.925][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.930][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.935][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.941][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171715183].
biodb.DEBUG[2024-07-13 16:04:40.942][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:40.943][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:40.944][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:40.950][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:40.951][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:40.953][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:40.954][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:40.955][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.956][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.960][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.965][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.966][private$selectFields]
biodb.TRACE[2024-07-13 16:04:40.967][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:40.969][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:40.970][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.971][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.972][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.975][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.976][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.977][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.979][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.980][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.981][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.982][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:40.984][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.985][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.987][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.989][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:40.990][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:40.995][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:40.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:40.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.000][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.005][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171715181].
biodb.DEBUG[2024-07-13 16:04:41.007][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:41.008][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:41.009][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:41.015][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:41.016][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:41.017][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:41.018][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:41.020][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.025][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.030][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:41.031][private$selectFields]
biodb.TRACE[2024-07-13 16:04:41.032][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:41.034][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:41.035][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:41.036][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.037][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.040][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.041][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.042][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.045][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.046][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:41.047][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:41.048][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.050][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.052][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.053][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:41.055][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.060][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.065][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.070][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171706621].
biodb.DEBUG[2024-07-13 16:04:41.071][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:41.073][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-07-13 16:04:41.075][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:41.076][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:41.077][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:41.084][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:41.085][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:41.086][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:41.087][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:41.096][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.26897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:41.100][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:41.101][cch$loadFileContent] Trying to load 1 files from cache: [1]: "405cf707472983a89dc9e0092ca888ad".
biodb.TRACE[2024-07-13 16:04:41.103][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:41.105][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/405cf707472983a89dc9e0092ca888ad.content".
biodb.DEBUG[2024-07-13 16:04:41.107][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:41.109][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:41.110][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:41.111][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:41.117][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:41.118][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:41.120][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:41.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:41.122][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.127][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.132][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:41.134][private$selectFields]
biodb.TRACE[2024-07-13 16:04:41.135][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:41.136][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:41.137][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:41.138][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.140][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.142][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.144][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.145][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.147][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.149][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:41.150][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:41.151][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.153][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.155][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.157][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:41.158][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.161][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.162][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.163][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.168][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.173][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171714625].
biodb.DEBUG[2024-07-13 16:04:41.175][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:41.176][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:41.177][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:41.183][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:41.184][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:41.185][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:41.187][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:41.188][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.193][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.198][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:41.199][private$selectFields]
biodb.TRACE[2024-07-13 16:04:41.200][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:41.201][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:41.203][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:41.204][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.205][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.208][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.209][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.210][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.211][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.212][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.214][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:41.215][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:41.216][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.217][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.220][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.221][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:41.222][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.227][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.232][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.238][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171704398].
biodb.DEBUG[2024-07-13 16:04:41.239][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:41.240][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:41.241][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:41.247][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:41.248][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:41.249][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:41.251][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:41.252][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.255][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.256][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.257][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.260][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.261][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.262][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:41.263][private$selectFields]
biodb.TRACE[2024-07-13 16:04:41.264][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:41.265][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:41.267][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:41.274][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.276][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.278][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.280][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.281][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.283][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.284][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.285][private$selectFields] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:41.287][private$organizeFieldsByGroups] Fields [1]: "ncbi.pubchem.comp.id"
biodb.TRACE[2024-07-13 16:04:41.288][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.289][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.291][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.293][private$organizeFieldsByGroups] Groups [2]: "ncbi.pubchem.comp.id, list()"
biodb.TRACE[2024-07-13 16:04:41.294][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.299][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.304][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.309][private$entriesToListOfDataframes] Entry converted to data frame: [1, 1]: [ncbi.pubchem.comp.id] [171703924].
biodb.DEBUG[2024-07-13 16:04:41.311][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:41.312][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-13 16:04:41.335][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-07-13 16:04:41.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-07-13 16:04:41.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.340][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-07-13 16:04:41.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-07-13 16:04:41.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-13 16:04:41.349][biodb::testThat]
biodb.INFO [2024-07-13 16:04:41.351][biodb::testThat] Running test function test_annotateMzValues_additional_fields (" Additional fields are accepted in annotateMzValues() ").
biodb.INFO [2024-07-13 16:04:41.352][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:04:41.353][biodb::testThat]
biodb.TRACE[2024-07-13 16:04:41.356][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-13 16:04:41.358][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-13 16:04:41.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.361][self$getBiodb()$getEntryFields()$get] Asked field names are: average.mass.
biodb.TRACE[2024-07-13 16:04:41.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: average.mass.
biodb.TRACE[2024-07-13 16:04:41.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.366][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:41.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:41.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.372][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:41.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:41.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.377][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:41.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:41.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.382][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:41.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:41.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.387][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:41.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:41.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.392][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:41.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:41.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.397][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:41.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:41.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.402][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:41.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:41.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:41.410][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:41.411][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:41.412][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:41.418][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:41.419][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:41.420][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:41.421][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:41.430][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:41.434][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:41.435][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-07-13 16:04:41.437][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:41.439][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-07-13 16:04:41.441][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:41.443][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:41.444][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:41.445][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:41.451][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:41.452][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:41.453][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:41.455][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:41.456][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:41.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:41.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.461][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:41.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:41.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.466][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:41.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:41.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.471][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:41.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:41.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.476][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:41.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:41.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.481][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:41.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:41.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.486][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:41.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:41.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.491][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:41.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:41.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.496][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:41.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:41.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.501][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:41.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:41.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.506][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:41.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:41.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:41.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:41.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.516][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:41.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:41.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.521][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:41.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:41.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.526][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:41.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:41.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.531][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:41.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:41.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.536][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:41.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:41.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.541][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:41.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:41.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.546][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:41.547][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:41.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.551][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:41.552][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:41.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.556][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:41.557][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:41.558][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.561][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:41.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:41.563][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.566][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:41.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:41.568][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.571][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:41.572][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:41.573][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.576][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:41.577][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:41.578][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.579][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.581][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:41.582][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:41.583][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.585][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.587][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.588][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.590][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.592][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.593][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.594][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.595][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:41.597][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:41.598][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.600][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:41.602][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:41.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.605][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:41.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:41.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.610][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:41.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:41.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.615][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:41.617][private$selectFields]
biodb.TRACE[2024-07-13 16:04:41.618][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:41.619][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:41.620][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:41.621][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:41.623][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:41.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.625][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.626][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:41.628][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:41.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.630][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.631][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:41.632][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:41.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.635][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.636][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:41.637][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:41.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.640][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.641][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:41.642][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:41.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.645][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.646][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:41.647][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:41.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.649][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.651][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:41.652][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:41.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.654][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.655][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:41.657][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:41.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.659][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.660][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:41.662][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:41.663][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.664][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.665][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:41.667][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:41.668][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.669][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.670][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:41.671][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:41.673][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.674][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.675][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:41.676][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:41.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.679][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.680][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:41.681][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:41.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.684][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.685][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.686][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.688][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.690][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:41.697][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:41.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.700][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.701][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:41.703][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:41.704][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.705][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.707][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:41.708][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:41.709][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.711][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.712][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:41.713][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:41.714][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.716][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.717][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:41.718][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:41.719][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.721][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.722][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:41.723][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:41.724][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.726][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.727][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:41.728][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:41.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.731][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.732][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:41.733][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:41.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.735][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.737][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:41.738][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:41.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.740][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.742][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:41.743][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:41.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.745][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.747][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:41.748][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:41.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.750][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.752][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:41.753][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:41.754][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.755][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.757][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:41.758][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:41.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.760][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.762][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:41.763][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:41.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.765][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.767][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:41.768][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:41.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.770][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.772][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.773][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.775][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.776][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:41.778][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:41.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.780][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.781][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:41.783][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:41.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.785][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.786][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:41.788][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:41.789][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:41.790][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:41.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.793][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.794][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:41.795][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:41.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.797][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.799][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:41.800][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:41.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.802][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.803][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:41.805][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:41.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.807][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.808][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:41.810][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:41.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.812][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.813][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:41.815][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:41.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.817][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.818][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:41.819][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:41.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.822][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.823][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:41.824][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:41.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.827][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.828][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:41.829][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:41.830][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.832][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.833][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:41.834][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:41.835][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.837][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.838][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:41.839][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:41.840][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.841][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.843][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:41.844][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:41.845][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.846][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.848][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:41.849][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:41.850][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.851][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.852][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.854][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:41.855][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.856][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.857][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:41.859][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:41.860][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.861][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.862][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:41.864][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:41.865][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.866][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.867][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-07-13 16:04:41.869][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:41.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:41.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.874][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:41.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:41.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.878][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:41.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:41.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.884][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:41.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:41.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.889][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:41.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:41.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.892][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.894][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:41.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:41.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.899][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:41.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:41.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.902][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.904][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:41.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:41.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.907][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.909][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:41.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:41.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.912][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.914][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:41.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:41.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.917][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.919][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:41.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:41.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.922][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.924][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:41.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:41.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.929][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:41.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:41.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.933][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.934][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:41.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:41.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.939][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:41.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:41.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.944][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:41.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:41.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.948][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.949][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:41.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:41.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.953][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.954][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:41.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:41.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.959][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:41.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:41.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.964][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:41.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:41.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.969][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:41.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:41.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.974][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:41.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:41.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.979][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:41.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:41.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.984][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:41.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:41.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.989][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:41.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:41.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.994][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:41.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:41.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:41.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:41.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:42.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:42.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.004][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:42.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:42.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.009][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:42.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:42.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.014][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:42.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:42.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.019][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:42.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:42.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.024][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:42.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:42.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.029][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:42.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:42.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.034][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:42.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:42.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.039][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:42.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:42.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.044][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:42.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:42.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.049][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:42.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:42.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.054][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:42.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:42.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.059][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:42.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:42.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.065][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:42.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:42.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.070][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:42.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:42.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.075][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:42.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:42.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.080][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:42.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:42.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.085][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:42.086][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:42.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.090][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:42.091][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:42.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.095][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:42.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:42.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.100][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:42.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:42.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.105][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:42.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:42.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.131][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171632701, [2-(benzofuran-2-yl)-1-methyl-2-oxo-ethyl]-methyl-ammonium, [1-(2-benzofuranyl)-1-oxopropan-2-yl]-methylammonium, [1-(1-benzofuran-2-yl)-1-oxopropan-2-yl]-methylazanium, [1-(1-benzofuran-2-yl)-1-oxidanylidene-propan-2-yl]-methyl-azanium, ...].
biodb.DEBUG[2024-07-13 16:04:42.132][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:42.133][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:42.134][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:42.141][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:42.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:42.143][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:42.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:42.146][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:42.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:42.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.151][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:42.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:42.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:42.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:42.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:42.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:42.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:42.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:42.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.171][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:42.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:42.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.176][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:42.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:42.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.181][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:42.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:42.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.186][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:42.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:42.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.191][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:42.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:42.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.196][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:42.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:42.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.201][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:42.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:42.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.206][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:42.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:42.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.211][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:42.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:42.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.216][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:42.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:42.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.221][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:42.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:42.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.226][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:42.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:42.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.231][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:42.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:42.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.236][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:42.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:42.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.241][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:42.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:42.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:42.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:42.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.252][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:42.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:42.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.257][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:42.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:42.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.262][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:42.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:42.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.267][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:42.268][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:42.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.271][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.272][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:42.273][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:42.274][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.277][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:42.278][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:42.279][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.282][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:42.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:42.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.287][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:42.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:42.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.292][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:42.294][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:42.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.298][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:42.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:42.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.303][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:42.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:42.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.308][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:42.309][private$selectFields]
biodb.TRACE[2024-07-13 16:04:42.310][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:42.311][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:42.312][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:42.314][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:42.315][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:42.316][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.317][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.319][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:42.320][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:42.321][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.322][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.323][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:42.325][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:42.326][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.327][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.328][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:42.330][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:42.331][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.332][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.333][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:42.335][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:42.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.337][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.338][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:42.339][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:42.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.342][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.343][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:42.344][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:42.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.347][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.348][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:42.349][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:42.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.352][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.353][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:42.354][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:42.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.357][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.358][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:42.359][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:42.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.361][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.363][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:42.364][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:42.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.366][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.367][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:42.369][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:42.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.371][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.372][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:42.374][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:42.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.376][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.377][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:42.379][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:42.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.381][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.382][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:42.383][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:42.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.386][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.387][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:42.388][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:42.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.391][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.392][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:42.393][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:42.394][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.396][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.397][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:42.398][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:42.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.401][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.402][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:42.403][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:42.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.406][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.407][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:42.408][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:42.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.410][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.412][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:42.413][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:42.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.415][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.417][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:42.418][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:42.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.420][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.421][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:42.423][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:42.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.425][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.426][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:42.428][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:42.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.430][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.431][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:42.433][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:42.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.435][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.436][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:42.438][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:42.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.440][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.441][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:42.442][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:42.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.445][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.446][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:42.447][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:42.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.450][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.451][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:42.452][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:42.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.455][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.456][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:42.457][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:42.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.460][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.461][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:42.462][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:42.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.464][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.466][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:42.467][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:42.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.469][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.471][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:42.472][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:42.473][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:42.474][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:42.476][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.477][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.478][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:42.479][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:42.481][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.482][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.483][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:42.484][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:42.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.487][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.488][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:42.489][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:42.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.491][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.493][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:42.494][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:42.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.496][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.498][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:42.499][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:42.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.501][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.502][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:42.504][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:42.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.506][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.507][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:42.509][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:42.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.511][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.512][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:42.514][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:42.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.516][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.517][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:42.518][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:42.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.521][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.529][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:42.530][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:42.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.533][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.534][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:42.536][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:42.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.539][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.540][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:42.541][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:42.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.544][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.545][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:42.546][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:42.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.549][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.550][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:42.551][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:42.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.553][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.555][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:42.556][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:42.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.558][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.560][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-07-13 16:04:42.561][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:42.562][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:42.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.566][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:42.567][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:42.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.571][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:42.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:42.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.576][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:42.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:42.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.581][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:42.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:42.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.586][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:42.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:42.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.592][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:42.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:42.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:42.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:42.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.601][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:42.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:42.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.606][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:42.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:42.610][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.611][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:42.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:42.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.617][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:42.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:42.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.623][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:42.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:42.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.628][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:42.629][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:42.630][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.633][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:42.634][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:42.635][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.638][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:42.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:42.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.643][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:42.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:42.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.648][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:42.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:42.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.654][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:42.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:42.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.659][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:42.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:42.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.664][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:42.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:42.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.670][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:42.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:42.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.675][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:42.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:42.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.680][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:42.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:42.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.685][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:42.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:42.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.690][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:42.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:42.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.695][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:42.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:42.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.701][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:42.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:42.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.706][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:42.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:42.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.711][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:42.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:42.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.716][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:42.718][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:42.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.721][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:42.723][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:42.724][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.726][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:42.728][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:42.729][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.732][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:42.733][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:42.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.737][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:42.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:42.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.742][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:42.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:42.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.747][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:42.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:42.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.753][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:42.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:42.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.758][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:42.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:42.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.763][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:42.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:42.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.768][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:42.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:42.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.773][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:42.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:42.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.779][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:42.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:42.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.784][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:42.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:42.786][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.789][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:42.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:42.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.795][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:42.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:42.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.800][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:42.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:42.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.806][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:42.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:42.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.823][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171615080, 5-amino-2-(4,5-dimethylimidazol-1-yl)pyridin-3-ol, 5-amino-2-(4,5-dimethyl-1-imidazolyl)-3-pyridinol, 5-amino-2-(4,5-dimethylimidazol-1-yl)pyridin-3-ol, 5-azanyl-2-(4,5-dimethylimidazol-1-yl)pyridin-3-ol, ...].
biodb.DEBUG[2024-07-13 16:04:42.824][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:42.825][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:42.827][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:42.833][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:42.834][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:42.835][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:42.837][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:42.838][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:42.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:42.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:42.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:42.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:42.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:42.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:42.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:42.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:42.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:42.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.865][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:42.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:42.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:42.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:42.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:42.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:42.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:42.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:42.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.885][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:42.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:42.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:42.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:42.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:42.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:42.897][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.900][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:42.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:42.902][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.905][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:42.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:42.907][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.910][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:42.911][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:42.912][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.915][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:42.916][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:42.917][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.920][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:42.921][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:42.922][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:42.926][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:42.927][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.930][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:42.931][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:42.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.935][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:42.936][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:42.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.940][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:42.941][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:42.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.945][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:42.946][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:42.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.957][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:42.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:42.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.963][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:42.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:42.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.968][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:42.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:42.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.973][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:42.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:42.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.978][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:42.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:42.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.983][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:42.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:42.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.988][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:42.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:42.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.993][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:42.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:42.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:42.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:42.998][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:43.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:43.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.003][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:43.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:43.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.009][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:43.010][private$selectFields]
biodb.TRACE[2024-07-13 16:04:43.011][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:43.012][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:43.013][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:43.015][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:43.016][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:43.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.019][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.020][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:43.021][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:43.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.024][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.025][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:43.026][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:43.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.029][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.030][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:43.031][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:43.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.034][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.035][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:43.036][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:43.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.039][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.040][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:43.041][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:43.043][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.044][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.045][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:43.047][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:43.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.049][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.050][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:43.052][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:43.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.054][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.056][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:43.057][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:43.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.059][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.061][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:43.062][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:43.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.064][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.065][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:43.067][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:43.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.069][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.070][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:43.072][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:43.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.074][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.075][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:43.077][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:43.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.079][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.080][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:43.082][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:43.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.084][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.085][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:43.087][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:43.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.089][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.090][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:43.092][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:43.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.094][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.095][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:43.097][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:43.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.099][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.100][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:43.102][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:43.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.104][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.105][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:43.106][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:43.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.109][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.110][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:43.111][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:43.113][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.114][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.115][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:43.116][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:43.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.119][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.120][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:43.121][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:43.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.123][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.125][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:43.126][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:43.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.128][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.130][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:43.131][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:43.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.133][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.134][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:43.136][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:43.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.138][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.139][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:43.141][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:43.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.143][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.144][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:43.146][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:43.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.148][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.149][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:43.150][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:43.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.153][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.154][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:43.155][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:43.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.158][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.159][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:43.160][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:43.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.163][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.164][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:43.165][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:43.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.168][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.169][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:43.170][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:43.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.172][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.174][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:43.175][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:43.176][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:43.177][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:43.179][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.180][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.181][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:43.182][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:43.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.185][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.186][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:43.187][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:43.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.189][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.191][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:43.192][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:43.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.194][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.195][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:43.197][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:43.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.199][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.200][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:43.201][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:43.203][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.204][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.205][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:43.206][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:43.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.209][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.210][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:43.211][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:43.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.213][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.215][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:43.216][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:43.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.218][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.219][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:43.221][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:43.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.223][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.224][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:43.226][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:43.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.228][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.229][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:43.230][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:43.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.233][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.234][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:43.235][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:43.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.237][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.239][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:43.240][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:43.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.242][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.243][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:43.245][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:43.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.247][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.248][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:43.250][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:43.251][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.252][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.253][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-07-13 16:04:43.254][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:43.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:43.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.259][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:43.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:43.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.264][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:43.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:43.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:43.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:43.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:43.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:43.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:43.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:43.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:43.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:43.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:43.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:43.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:43.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:43.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:43.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:43.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.304][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:43.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:43.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:43.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:43.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:43.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:43.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.319][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:43.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:43.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.324][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:43.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:43.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.329][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:43.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:43.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.334][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:43.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:43.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.339][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:43.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:43.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.344][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:43.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:43.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.349][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:43.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:43.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.354][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:43.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:43.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:43.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:43.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.370][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:43.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:43.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.375][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:43.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:43.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.380][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:43.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:43.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.385][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:43.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:43.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.390][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:43.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:43.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.395][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:43.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:43.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.400][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:43.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:43.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.405][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:43.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:43.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.410][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:43.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:43.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.415][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:43.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:43.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.420][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:43.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:43.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.426][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:43.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:43.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.431][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:43.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:43.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.435][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:43.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:43.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.441][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:43.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:43.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.445][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:43.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:43.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.450][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:43.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:43.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.456][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:43.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:43.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.460][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:43.462][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:43.463][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.465][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:43.467][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:43.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.470][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:43.472][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:43.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.475][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:43.477][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:43.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.480][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:43.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:43.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.485][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:43.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:43.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.490][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:43.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:43.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.495][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:43.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:43.498][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.499][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.512][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171615005, 5-fluorospiro[indene-1,4'-tetrahydropyran], 5-fluorospiro[indene-1,4'-oxane], 5-fluorospiro[indene-1,4'-oxane], 5-fluoranylspiro[indene-1,4'-oxane], ...].
biodb.DEBUG[2024-07-13 16:04:43.513][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:43.514][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-07-13 16:04:43.519][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:43.520][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:43.521][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:43.527][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:43.528][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:43.529][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:43.531][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:43.539][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:43.543][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:43.544][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-07-13 16:04:43.546][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:43.548][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-07-13 16:04:43.550][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:43.552][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:43.553][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:43.554][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:43.560][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:43.561][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:43.562][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:43.563][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:43.565][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:43.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:43.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.570][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:43.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:43.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:43.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:43.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.580][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:43.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:43.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.585][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:43.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:43.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.589][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:43.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:43.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:43.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:43.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:43.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:43.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.604][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:43.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:43.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:43.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:43.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:43.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:43.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.619][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:43.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:43.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.624][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:43.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:43.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.628][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:43.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:43.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.633][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:43.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:43.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.638][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:43.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:43.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.643][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:43.644][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:43.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.647][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.648][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:43.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:43.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.653][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:43.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:43.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.658][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:43.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:43.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.662][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:43.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:43.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.667][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:43.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:43.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.672][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:43.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:43.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.677][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:43.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:43.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.682][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:43.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:43.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.687][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:43.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:43.689][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.692][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:43.693][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:43.694][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.695][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.697][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:43.698][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:43.699][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.700][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.701][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:43.703][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:43.704][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.706][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:43.708][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:43.709][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.710][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.711][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:43.713][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:43.714][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.715][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.716][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:43.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:43.719][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.721][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:43.722][private$selectFields]
biodb.TRACE[2024-07-13 16:04:43.723][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:43.724][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:43.726][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:43.727][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:43.728][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:43.729][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.730][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.732][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:43.733][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:43.734][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.735][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.736][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:43.738][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:43.739][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.740][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.741][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:43.743][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:43.744][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.745][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.746][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:43.747][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:43.749][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.750][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.751][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:43.752][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:43.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.755][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.756][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:43.757][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:43.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.759][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.761][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:43.762][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:43.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.764][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.765][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:43.767][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:43.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.775][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.777][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:43.778][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:43.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.781][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.782][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:43.783][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:43.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.786][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.787][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:43.788][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:43.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.791][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.792][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:43.793][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:43.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.795][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.797][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:43.798][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:43.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.800][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.801][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:43.803][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:43.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.805][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.806][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:43.808][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:43.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.810][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.811][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:43.812][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:43.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.815][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.816][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:43.817][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:43.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.820][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.821][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:43.822][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:43.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.825][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.826][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:43.827][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:43.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.829][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.831][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:43.832][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:43.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.834][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.836][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:43.837][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:43.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.839][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.840][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:43.842][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:43.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.844][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.845][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:43.847][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:43.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.849][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.850][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:43.851][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:43.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.854][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.855][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:43.856][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:43.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.859][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.860][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:43.861][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:43.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.863][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.865][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:43.866][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:43.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.868][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.869][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:43.871][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:43.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.873][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.874][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:43.875][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:43.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.878][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.879][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:43.880][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:43.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.883][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.884][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:43.885][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:43.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.887][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.889][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:43.890][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:43.891][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:43.892][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:43.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.895][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.896][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:43.897][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:43.898][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.900][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.901][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:43.902][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:43.903][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.904][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.906][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:43.907][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:43.908][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.909][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.910][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:43.912][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:43.913][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.914][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.915][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:43.917][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:43.918][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.919][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.920][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:43.921][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:43.923][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.924][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.925][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:43.926][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:43.927][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.929][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.930][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:43.931][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:43.932][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.933][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.935][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:43.936][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:43.937][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.938][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.939][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:43.941][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:43.942][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.943][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.944][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:43.946][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:43.947][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.948][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.949][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:43.950][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:43.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.953][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.954][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:43.955][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:43.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.957][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.959][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:43.960][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:43.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.962][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.963][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:43.965][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:43.966][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.967][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.968][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-07-13 16:04:43.970][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:43.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:43.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.975][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:43.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:43.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.979][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:43.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:43.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.983][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.985][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:43.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:43.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.989][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:43.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:43.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:43.994][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:43.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:43.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:43.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.000][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:44.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:44.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.004][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:44.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:44.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.009][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:44.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:44.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:44.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:44.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.019][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:44.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:44.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.024][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:44.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:44.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.029][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:44.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:44.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.034][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:44.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:44.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.039][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:44.040][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:44.041][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.044][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:44.045][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:44.046][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.049][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:44.050][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:44.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.054][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:44.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:44.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.057][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.059][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:44.060][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:44.061][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.062][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.064][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:44.065][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:44.066][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.069][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:44.070][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:44.071][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.074][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:44.075][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:44.076][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.078][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:44.080][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:44.081][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.083][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:44.085][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:44.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.088][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:44.090][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:44.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.093][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:44.095][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:44.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.098][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:44.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:44.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.103][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:44.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:44.106][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.108][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:44.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:44.111][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.113][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:44.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:44.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.118][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:44.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:44.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.123][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:44.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:44.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.126][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.128][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:44.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:44.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.131][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.133][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:44.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:44.135][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.136][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.138][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:44.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:44.140][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.141][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.143][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:44.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:44.145][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.146][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.148][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:44.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:44.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.152][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.153][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:44.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:44.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.157][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.158][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:44.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:44.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.163][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:44.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:44.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.168][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:44.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:44.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.179][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:44.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:44.182][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.185][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:44.186][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:44.187][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.190][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:44.191][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:44.192][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.195][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:44.196][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:44.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.200][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:44.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:44.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.205][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:44.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:44.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.209][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.210][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:44.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:44.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.214][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.226][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171699478, 1-[(3S)-3,4-dihydroxy-5-methylene-tetrahydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(3S)-3,4-dihydroxy-5-methylene-2-oxolanyl]pyrimidine-2,4-dione, 1-[(3S)-3,4-dihydroxy-5-methylideneoxolan-2-yl]pyrimidine-2,4-dione, 1-[(3S)-5-methylidene-3,4-bis(oxidanyl)oxolan-2-yl]pyrimidine-2,4-dione, ...].
biodb.DEBUG[2024-07-13 16:04:44.228][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:44.229][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:44.230][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:44.236][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:44.237][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:44.238][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:44.239][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:44.241][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:44.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:44.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.246][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:44.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:44.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.251][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:44.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:44.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.256][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:44.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:44.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.261][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:44.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:44.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:44.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:44.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:44.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:44.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:44.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:44.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.280][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:44.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:44.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.285][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:44.286][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:44.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.290][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:44.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:44.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.295][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:44.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:44.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.300][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:44.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:44.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.305][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:44.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:44.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.310][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:44.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:44.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.315][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:44.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:44.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.320][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:44.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:44.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.325][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:44.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:44.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.329][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:44.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:44.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.334][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:44.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:44.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.339][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:44.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:44.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.344][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:44.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:44.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.349][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:44.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:44.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.354][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:44.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:44.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.359][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:44.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:44.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.364][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:44.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:44.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.369][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:44.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:44.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.374][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:44.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:44.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.379][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:44.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:44.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.383][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:44.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:44.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.388][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:44.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:44.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.393][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:44.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:44.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.398][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:44.399][private$selectFields]
biodb.TRACE[2024-07-13 16:04:44.400][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:44.402][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:44.403][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:44.404][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:44.405][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:44.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.408][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.409][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:44.410][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:44.411][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.413][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.414][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:44.415][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:44.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.417][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.419][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:44.420][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:44.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.422][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.424][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:44.425][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:44.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.427][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.428][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:44.430][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:44.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.432][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.433][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:44.435][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:44.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.437][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.438][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:44.439][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:44.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.442][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.443][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:44.444][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:44.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.447][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.448][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:44.449][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:44.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.452][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.453][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:44.454][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:44.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.456][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.458][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:44.459][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:44.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.461][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.462][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:44.464][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:44.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.466][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.467][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:44.469][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:44.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.471][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.472][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:44.473][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:44.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.476][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.477][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:44.478][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:44.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.481][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.482][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:44.483][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:44.484][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.486][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.487][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:44.488][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:44.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.491][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.492][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:44.493][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:44.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.495][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.497][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:44.498][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:44.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.500][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.501][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:44.503][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:44.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.505][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.506][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:44.508][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:44.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.510][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.511][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:44.513][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:44.514][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.515][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.516][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:44.517][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:44.519][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.520][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.521][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:44.522][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:44.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.524][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.526][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:44.527][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:44.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.529][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.531][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:44.532][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:44.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.534][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.535][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:44.537][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:44.538][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.539][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.540][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:44.541][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:44.543][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.544][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.545][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:44.546][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:44.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.549][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.550][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:44.551][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:44.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.553][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.555][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:44.556][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:44.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.558][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.559][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:44.561][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:44.562][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:44.563][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:44.564][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.565][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.567][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:44.568][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:44.569][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.570][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.571][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:44.573][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:44.574][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.575][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.576][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:44.583][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:44.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.586][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.587][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:44.589][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:44.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.592][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.593][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:44.594][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:44.595][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.596][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.598][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:44.599][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:44.600][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.601][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.602][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:44.604][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:44.605][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.606][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.607][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:44.609][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:44.610][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.611][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.612][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:44.613][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:44.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.616][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.617][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:44.618][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:44.619][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.621][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.622][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:44.623][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:44.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.625][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.627][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:44.628][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:44.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.630][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.631][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:44.633][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:44.634][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.635][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.636][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:44.638][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:44.639][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.640][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.641][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:44.643][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:44.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.645][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.646][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-07-13 16:04:44.648][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:44.649][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:44.650][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.651][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.653][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:44.654][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:44.655][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.656][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.657][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:44.659][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:44.660][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.661][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.663][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:44.664][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:44.665][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.666][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.668][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:44.669][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:44.670][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.671][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.673][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:44.674][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:44.675][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.678][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:44.679][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:44.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.683][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:44.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:44.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.688][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:44.689][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:44.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.693][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:44.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:44.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.698][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:44.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:44.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.703][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:44.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:44.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.709][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:44.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:44.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:44.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:44.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:44.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:44.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:44.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:44.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:44.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:44.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.735][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:44.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:44.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.740][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:44.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:44.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.745][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:44.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:44.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.750][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:44.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:44.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.755][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:44.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:44.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.760][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:44.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:44.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.765][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:44.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:44.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.770][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:44.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:44.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.775][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:44.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:44.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.780][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:44.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:44.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.785][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:44.787][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:44.788][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.790][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:44.792][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:44.793][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.795][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:44.797][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:44.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.800][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:44.802][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:44.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.805][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:44.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:44.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.810][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:44.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:44.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.815][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:44.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:44.818][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.819][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.820][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:44.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:44.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.825][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:44.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:44.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.831][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:44.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:44.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.836][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:44.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:44.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.840][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:44.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:44.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.846][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:44.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:44.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.851][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:44.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:44.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.856][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:44.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:44.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.861][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:44.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:44.863][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.864][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.866][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:44.867][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:44.868][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.871][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:44.872][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:44.873][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.876][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:44.877][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:44.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.881][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:44.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:44.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.886][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:44.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:44.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.902][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171652018, 1-(2,2,2-trifluoroethyl)indoline-5-carbonitrile, 1-(2,2,2-trifluoroethyl)-2,3-dihydroindole-5-carbonitrile, 1-(2,2,2-trifluoroethyl)-2,3-dihydroindole-5-carbonitrile, 1-[2,2,2-tris(fluoranyl)ethyl]-2,3-dihydroindole-5-carbonitrile, ...].
biodb.DEBUG[2024-07-13 16:04:44.903][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:44.905][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:44.906][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:44.912][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:44.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:44.914][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:44.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:44.917][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:44.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:44.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.922][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:44.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:44.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.927][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:44.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:44.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.932][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:44.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:44.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.937][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:44.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:44.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.942][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:44.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:44.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.947][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:44.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:44.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.952][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:44.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:44.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.957][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:44.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:44.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:44.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:44.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:44.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:44.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:44.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:44.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.977][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:44.978][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:44.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.982][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:44.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:44.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.987][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:44.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:44.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:44.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:44.999][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:45.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:45.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.005][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:45.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:45.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.010][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:45.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:45.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.015][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:45.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:45.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.020][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:45.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:45.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.025][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:45.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:45.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.030][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:45.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:45.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.035][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:45.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:45.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.040][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:45.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:45.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.043][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.045][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:45.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:45.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.048][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.050][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:45.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:45.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.055][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:45.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:45.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.060][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:45.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:45.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.065][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:45.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:45.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.070][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:45.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:45.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.075][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:45.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:45.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.080][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:45.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:45.082][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.083][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.085][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:45.086][private$selectFields]
biodb.TRACE[2024-07-13 16:04:45.087][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:45.088][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:45.089][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:45.091][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:45.092][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:45.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.094][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.095][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:45.097][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:45.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.099][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.100][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:45.102][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:45.103][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.104][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.105][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:45.106][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:45.108][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.109][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.110][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:45.111][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:45.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.114][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.115][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:45.116][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:45.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.118][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.120][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:45.121][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:45.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.123][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.125][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:45.126][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:45.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.128][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.129][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:45.131][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:45.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.133][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.134][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:45.136][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:45.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.138][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.139][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:45.141][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:45.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.143][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.144][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:45.145][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:45.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.148][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.149][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:45.150][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:45.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.153][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.154][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:45.155][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:45.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.157][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.159][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:45.160][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:45.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.162][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.163][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:45.165][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:45.166][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.167][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.168][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:45.170][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:45.171][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.172][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.173][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:45.175][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:45.176][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.177][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.178][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:45.179][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:45.181][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.182][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.183][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:45.184][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:45.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.187][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.188][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:45.189][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:45.190][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.191][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.193][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:45.194][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:45.195][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.196][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.197][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:45.199][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:45.200][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.201][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.202][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:45.204][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:45.205][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.206][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.207][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:45.208][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:45.210][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.211][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.212][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:45.213][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:45.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.216][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.217][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:45.218][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:45.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.220][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.222][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:45.223][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:45.224][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.225][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.226][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:45.228][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:45.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.230][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.231][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:45.233][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:45.234][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.235][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.236][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:45.237][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:45.239][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.240][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.241][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:45.242][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:45.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.245][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.246][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:45.247][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:45.249][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:45.250][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:45.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.253][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.254][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:45.255][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:45.256][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.258][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.259][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:45.260][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:45.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.263][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.264][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:45.265][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:45.266][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.268][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.269][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:45.270][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:45.271][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.272][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.274][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:45.275][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:45.276][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.277][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.278][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:45.280][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:45.281][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.282][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.283][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:45.285][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:45.286][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.287][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.288][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:45.290][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:45.291][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.292][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.293][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:45.294][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:45.296][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.297][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.298][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:45.299][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:45.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.302][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.303][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:45.304][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:45.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.306][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.308][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:45.309][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:45.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.311][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.313][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:45.314][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:45.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.316][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.317][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:45.319][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:45.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.321][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.322][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:45.324][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:45.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.326][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.327][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-07-13 16:04:45.329][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:45.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:45.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.334][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:45.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:45.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.338][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:45.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:45.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.344][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:45.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:45.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.347][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.349][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:45.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:45.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.352][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.354][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:45.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:45.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.357][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.359][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:45.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:45.361][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.362][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.364][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:45.365][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:45.366][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.367][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.369][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:45.370][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:45.371][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.372][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.374][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:45.375][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:45.376][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.377][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.379][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:45.380][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:45.381][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.384][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:45.385][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:45.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.389][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:45.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:45.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.394][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:45.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:45.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:45.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:45.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.433][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.434][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:45.436][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:45.437][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.438][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:45.441][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:45.442][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.443][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.445][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:45.446][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:45.447][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.448][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.450][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:45.451][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:45.452][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.453][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.455][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:45.456][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:45.457][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.460][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:45.461][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:45.462][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.464][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.465][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:45.466][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:45.468][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.469][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.470][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:45.471][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:45.473][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.474][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.475][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:45.476][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:45.478][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.479][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.480][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:45.482][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:45.483][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.484][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.485][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:45.487][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:45.488][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.489][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.491][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:45.492][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:45.493][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.494][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.496][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:45.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:45.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.501][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:45.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:45.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.506][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:45.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:45.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.511][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:45.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:45.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.516][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:45.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:45.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.521][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:45.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:45.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.526][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:45.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:45.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.531][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:45.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:45.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.536][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:45.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:45.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.542][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:45.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:45.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.547][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:45.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:45.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.552][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:45.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:45.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.557][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:45.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:45.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.562][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:45.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:45.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.567][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:45.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:45.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.573][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:45.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:45.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.578][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:45.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:45.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.583][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:45.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:45.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.588][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:45.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:45.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.593][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:45.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:45.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.598][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:45.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:45.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.615][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171652005, 4-[(3,3-difluorocyclobutyl)amino]-2-fluoro-benzonitrile, 4-[(3,3-difluorocyclobutyl)amino]-2-fluorobenzonitrile, 4-[(3,3-difluorocyclobutyl)amino]-2-fluorobenzonitrile, 4-[[3,3-bis(fluoranyl)cyclobutyl]amino]-2-fluoranyl-benzenecarbonitrile, ...].
biodb.DEBUG[2024-07-13 16:04:45.616][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:45.618][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-07-13 16:04:45.629][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:45.631][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:45.632][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:45.638][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:45.639][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:45.640][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:45.641][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:45.650][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.23:204.25[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:45.654][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:45.656][cch$loadFileContent] Trying to load 1 files from cache: [1]: "2616ca37a6f6e1bc281f8c51bc53ce81".
biodb.TRACE[2024-07-13 16:04:45.658][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:45.659][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/2616ca37a6f6e1bc281f8c51bc53ce81.content".
biodb.DEBUG[2024-07-13 16:04:45.662][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:45.664][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:45.665][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:45.667][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:45.674][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:45.675][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:45.676][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:45.677][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:45.679][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:45.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:45.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.684][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:45.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:45.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:45.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:45.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.694][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:45.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:45.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:45.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:45.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.704][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:45.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:45.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.707][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.709][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:45.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:45.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.712][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.714][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:45.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:45.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.717][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.719][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:45.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:45.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.722][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.724][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:45.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:45.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.729][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:45.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:45.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:45.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:45.736][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.739][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:45.740][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:45.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.744][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:45.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:45.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.749][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:45.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:45.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.754][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:45.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:45.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.759][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:45.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:45.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.764][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:45.766][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:45.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.769][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:45.771][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:45.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.774][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:45.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:45.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.780][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:45.781][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:45.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.785][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:45.786][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:45.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.789][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.790][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:45.791][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:45.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.794][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.795][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:45.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:45.798][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.799][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.800][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:45.801][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:45.803][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.804][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.805][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:45.807][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:45.808][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.809][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.810][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:45.812][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:45.813][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.816][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:45.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:45.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.822][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:45.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:45.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.827][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:45.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:45.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.832][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:45.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:45.835][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.837][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:45.839][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:45.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.843][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:45.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:45.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.850][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:45.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:45.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.862][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:45.864][private$selectFields]
biodb.TRACE[2024-07-13 16:04:45.865][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:45.866][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:45.868][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:45.869][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:45.870][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:45.871][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.872][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.874][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:45.875][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:45.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.877][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.879][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:45.880][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:45.881][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.882][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.884][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:45.885][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:45.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.887][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.889][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:45.890][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:45.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.892][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.894][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:45.895][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:45.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.897][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.899][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:45.900][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:45.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.902][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.904][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:45.905][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:45.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.907][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.909][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:45.910][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:45.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.912][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.913][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:45.915][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:45.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.917][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.918][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:45.920][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:45.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.922][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.923][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:45.925][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:45.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.927][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.928][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:45.930][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:45.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.932][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.933][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:45.934][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:45.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.937][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.938][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:45.939][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:45.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.942][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.943][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:45.944][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:45.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.947][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.948][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:45.949][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:45.950][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.951][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.953][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:45.954][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:45.955][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.956][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.958][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:45.959][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:45.960][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.961][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.962][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:45.964][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:45.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.966][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.967][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:45.969][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:45.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.971][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.972][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:45.974][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:45.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.976][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.977][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:45.979][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:45.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.981][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.982][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:45.984][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:45.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.986][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.987][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:45.989][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:45.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.991][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.992][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:45.993][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:45.995][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:45.996][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:45.997][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:45.998][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:46.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.001][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.002][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:46.003][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:46.004][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.006][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.007][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:46.008][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:46.009][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.011][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.012][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:46.013][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:46.014][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.015][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.017][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:46.018][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:46.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.020][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.022][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:46.023][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:46.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.025][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.026][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:46.028][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:46.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.030][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.031][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:46.033][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:46.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.035][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.036][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:46.037][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:46.039][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:46.040][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:46.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.042][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.044][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:46.045][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:46.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.047][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.049][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:46.050][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:46.051][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.052][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.054][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:46.055][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:46.056][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.057][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.059][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:46.060][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:46.061][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.062][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.063][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:46.065][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:46.066][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.067][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.068][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:46.070][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:46.071][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.072][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.073][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:46.075][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:46.076][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.077][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.078][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:46.080][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:46.081][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.082][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.083][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:46.085][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:46.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.087][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.088][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:46.090][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:46.091][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.092][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.093][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:46.095][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:46.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.097][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.098][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:46.100][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:46.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.102][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.103][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:46.105][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:46.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.107][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.108][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:46.110][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:46.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.112][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.114][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:46.115][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:46.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.117][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.119][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-07-13 16:04:46.120][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:46.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:46.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.125][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:46.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:46.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:46.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:46.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:46.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:46.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.141][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:46.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:46.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:46.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:46.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:46.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:46.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:46.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:46.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:46.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:46.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:46.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:46.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.172][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:46.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:46.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.177][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:46.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:46.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.182][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:46.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:46.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.187][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:46.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:46.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.192][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:46.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:46.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:46.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:46.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:46.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:46.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.207][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:46.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:46.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.213][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:46.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:46.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.218][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:46.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:46.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.223][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:46.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:46.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.228][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:46.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:46.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.233][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:46.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:46.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.238][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:46.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:46.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:46.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:46.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:46.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:46.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:46.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:46.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.259][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:46.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:46.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.264][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:46.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:46.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.269][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:46.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:46.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.280][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.282][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:46.283][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:46.284][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.286][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.287][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:46.288][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:46.290][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.291][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.292][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:46.293][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:46.295][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.296][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.297][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:46.299][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:46.300][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.301][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.302][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:46.304][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:46.305][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.306][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.308][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:46.309][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:46.310][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.311][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.313][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:46.314][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:46.315][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.318][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:46.319][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:46.320][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.323][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:46.324][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:46.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.328][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:46.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:46.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.333][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:46.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:46.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.338][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:46.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:46.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.344][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:46.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:46.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.349][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:46.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:46.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.354][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:46.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:46.356][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.359][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:46.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:46.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.364][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:46.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:46.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.370][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:46.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:46.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.386][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171632701, [2-(benzofuran-2-yl)-1-methyl-2-oxo-ethyl]-methyl-ammonium, [1-(2-benzofuranyl)-1-oxopropan-2-yl]-methylammonium, [1-(1-benzofuran-2-yl)-1-oxopropan-2-yl]-methylazanium, [1-(1-benzofuran-2-yl)-1-oxidanylidene-propan-2-yl]-methyl-azanium, ...].
biodb.DEBUG[2024-07-13 16:04:46.388][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:46.389][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:46.390][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:46.396][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:46.398][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:46.399][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:46.400][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:46.401][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:46.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:46.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.406][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:46.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:46.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.412][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:46.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:46.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.417][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:46.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:46.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:46.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:46.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:46.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:46.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.432][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:46.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:46.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:46.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:46.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.442][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:46.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:46.445][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.446][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:46.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:46.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:46.454][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:46.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.457][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:46.459][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:46.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.463][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:46.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:46.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.468][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:46.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:46.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.474][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:46.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:46.477][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.478][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.479][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:46.481][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:46.482][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.483][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.484][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:46.486][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:46.487][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.488][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.490][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:46.491][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:46.492][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.493][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.494][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:46.496][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:46.497][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.498][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.499][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:46.501][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:46.502][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.503][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.504][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:46.506][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:46.507][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.509][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:46.511][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:46.512][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.514][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:46.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:46.517][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.519][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:46.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:46.522][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.523][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.524][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:46.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:46.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.528][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.529][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:46.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:46.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.533][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.534][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:46.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:46.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.539][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:46.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:46.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.544][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:46.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:46.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.548][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:46.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:46.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.553][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:46.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:46.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.558][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:46.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:46.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.563][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:46.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:46.566][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.568][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:46.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:46.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.573][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:46.574][private$selectFields]
biodb.TRACE[2024-07-13 16:04:46.575][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:46.577][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:46.578][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:46.579][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:46.580][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:46.581][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.583][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.584][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:46.585][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:46.586][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.588][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.589][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:46.590][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:46.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.592][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.594][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:46.595][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:46.596][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.597][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.598][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:46.600][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:46.601][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.602][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.603][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:46.605][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:46.606][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.607][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.608][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:46.609][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:46.611][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.612][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.613][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:46.614][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:46.615][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.617][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.618][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:46.619][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:46.620][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.621][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.623][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:46.624][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:46.625][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.626][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.627][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:46.629][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:46.630][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.631][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.632][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:46.634][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:46.635][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.636][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.637][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:46.638][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:46.640][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.641][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.642][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:46.643][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:46.644][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.646][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.647][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:46.648][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:46.649][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.650][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.652][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:46.653][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:46.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.655][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.656][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:46.658][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:46.659][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.660][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.661][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:46.663][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:46.664][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.665][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.666][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:46.668][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:46.669][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.670][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.671][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:46.672][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:46.674][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.675][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.676][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:46.678][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:46.679][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.680][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.681][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:46.683][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:46.684][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.685][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.686][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:46.688][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:46.689][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.696][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.698][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:46.699][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:46.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.702][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.703][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:46.705][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:46.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.707][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.708][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:46.709][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:46.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.712][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.713][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:46.714][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:46.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.717][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.718][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:46.719][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:46.720][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.722][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.723][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:46.724][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:46.725][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.727][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.728][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:46.729][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:46.730][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.731][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.733][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:46.734][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:46.735][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.736][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.738][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:46.739][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:46.740][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.741][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.743][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:46.744][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:46.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.746][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.747][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:46.749][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:46.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.751][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.752][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:46.754][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:46.755][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:46.756][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:46.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.759][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.760][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:46.761][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:46.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.763][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.765][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:46.766][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:46.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.768][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.769][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:46.771][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:46.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.773][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.774][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:46.776][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:46.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.778][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.779][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:46.781][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:46.782][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.783][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.784][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:46.786][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:46.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.788][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.789][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:46.790][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:46.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.793][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.794][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:46.795][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:46.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.798][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.799][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:46.800][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:46.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.802][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.804][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:46.805][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:46.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.807][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.808][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:46.810][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:46.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.812][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.813][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:46.815][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:46.816][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.817][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.818][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:46.820][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:46.821][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.822][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.823][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:46.825][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:46.826][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.827][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.828][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:46.830][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:46.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.832][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.833][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-07-13 16:04:46.835][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:46.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:46.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:46.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:46.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.844][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:46.846][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:46.847][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.848][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.850][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:46.851][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:46.852][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:46.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:46.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:46.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:46.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.865][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:46.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:46.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.869][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:46.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:46.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:46.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:46.878][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:46.882][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:46.883][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.885][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:46.887][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:46.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:46.892][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:46.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.896][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:46.897][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:46.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.901][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:46.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:46.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:46.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:46.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.911][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:46.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:46.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.916][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:46.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:46.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.921][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:46.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:46.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.926][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:46.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:46.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.931][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:46.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:46.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.936][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:46.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:46.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.941][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:46.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:46.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.945][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.946][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:46.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:46.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.950][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.951][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:46.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:46.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.955][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.956][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:46.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:46.959][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.960][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.961][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:46.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:46.964][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.965][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.966][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:46.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:46.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.970][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.971][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:46.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:46.974][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.975][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.976][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:46.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:46.979][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.980][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.981][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:46.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:46.984][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.985][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.986][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:46.988][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:46.989][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.990][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.991][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:46.993][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:46.994][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:46.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:46.996][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:46.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:46.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.000][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.001][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:47.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:47.004][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.005][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.006][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:47.008][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:47.009][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.010][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.011][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:47.013][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:47.014][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.015][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.016][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:47.018][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:47.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.021][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:47.023][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:47.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.026][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:47.028][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:47.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.032][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:47.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:47.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.037][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:47.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:47.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.041][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:47.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:47.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.047][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:47.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:47.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.052][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:47.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:47.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.057][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:47.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:47.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.062][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:47.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:47.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.067][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:47.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:47.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.072][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:47.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:47.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.088][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171615080, 5-amino-2-(4,5-dimethylimidazol-1-yl)pyridin-3-ol, 5-amino-2-(4,5-dimethyl-1-imidazolyl)-3-pyridinol, 5-amino-2-(4,5-dimethylimidazol-1-yl)pyridin-3-ol, 5-azanyl-2-(4,5-dimethylimidazol-1-yl)pyridin-3-ol, ...].
biodb.DEBUG[2024-07-13 16:04:47.089][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:47.091][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:47.092][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:47.098][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:47.099][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:47.100][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:47.101][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:47.109][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:47.111][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:47.112][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.115][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:47.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:47.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.120][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:47.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:47.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.125][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:47.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:47.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.130][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:47.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:47.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.135][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:47.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:47.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.140][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:47.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:47.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:47.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:47.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.150][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:47.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:47.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.156][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:47.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:47.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.161][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:47.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:47.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.166][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:47.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:47.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.171][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:47.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:47.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.176][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:47.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:47.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.181][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:47.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:47.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.186][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:47.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:47.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.191][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:47.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:47.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.196][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:47.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:47.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.201][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:47.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:47.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.206][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:47.207][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:47.208][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.211][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:47.212][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:47.213][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.216][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:47.217][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:47.218][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.221][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:47.222][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:47.223][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.226][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:47.227][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:47.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.231][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:47.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:47.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.236][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:47.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:47.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.241][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:47.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:47.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.246][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:47.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:47.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.251][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:47.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:47.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.256][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:47.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:47.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.261][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:47.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:47.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.266][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:47.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:47.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.271][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:47.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:47.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.276][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:47.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:47.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.281][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:47.282][private$selectFields]
biodb.TRACE[2024-07-13 16:04:47.283][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:47.284][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:47.285][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:47.287][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:47.288][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:47.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.290][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.292][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:47.293][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:47.294][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.295][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.296][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:47.298][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:47.299][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.300][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.301][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:47.303][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:47.304][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.305][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.306][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:47.308][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:47.309][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.310][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.311][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:47.313][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:47.314][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.315][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.316][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:47.317][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:47.319][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.320][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.321][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:47.322][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:47.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.325][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.326][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:47.327][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:47.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.330][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.331][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:47.332][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:47.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.334][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.336][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:47.337][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:47.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.339][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.340][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:47.342][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:47.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.344][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.345][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:47.347][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:47.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.349][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.350][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:47.352][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:47.353][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.354][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.355][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:47.357][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:47.358][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.359][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.360][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:47.361][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:47.363][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.364][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.365][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:47.366][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:47.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.369][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.370][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:47.371][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:47.372][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.374][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.375][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:47.376][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:47.377][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.378][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.380][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:47.381][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:47.382][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.383][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.385][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:47.386][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:47.387][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.388][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.390][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:47.391][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:47.392][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.393][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.394][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:47.396][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:47.397][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.398][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.399][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:47.401][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:47.402][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.403][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.404][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:47.406][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:47.407][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.408][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.409][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:47.410][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:47.412][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.413][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.414][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:47.415][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:47.416][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.418][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.419][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:47.420][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:47.421][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.423][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.424][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:47.425][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:47.426][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.427][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.429][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:47.430][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:47.431][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.432][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.434][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:47.435][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:47.436][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.437][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.439][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:47.440][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:47.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.442][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.444][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:47.445][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:47.446][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.447][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.448][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:47.450][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:47.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.452][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.453][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:47.455][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:47.456][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:47.457][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:47.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.460][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.461][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:47.462][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:47.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.464][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.466][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:47.467][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:47.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.469][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.471][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:47.472][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:47.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.474][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.475][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:47.477][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:47.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.479][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.480][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:47.482][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:47.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.484][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.485][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:47.487][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:47.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.489][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.490][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:47.491][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:47.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.494][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.495][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:47.496][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:47.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.499][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.500][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:47.501][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:47.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.504][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.505][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:47.506][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:47.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.509][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.510][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:47.511][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:47.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.513][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.515][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:47.522][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:47.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.525][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.526][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:47.528][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:47.529][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.530][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.531][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:47.533][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:47.534][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.535][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.536][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:47.538][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:47.539][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.540][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.541][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-07-13 16:04:47.543][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:47.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:47.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.548][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:47.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:47.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.553][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:47.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:47.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.558][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:47.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:47.560][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.563][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:47.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:47.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.568][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:47.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:47.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.573][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:47.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:47.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.578][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:47.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:47.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.583][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:47.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:47.586][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.589][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:47.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:47.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:47.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:47.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:47.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:47.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.604][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:47.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:47.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.609][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:47.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:47.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.614][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:47.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:47.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.619][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:47.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:47.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.624][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:47.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:47.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.629][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:47.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:47.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.634][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:47.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:47.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.639][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:47.640][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:47.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.644][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:47.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:47.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.649][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:47.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:47.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.654][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:47.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:47.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.658][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.659][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:47.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:47.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.663][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.664][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:47.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:47.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.669][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:47.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:47.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.673][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.674][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:47.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:47.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.679][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:47.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:47.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.684][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:47.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:47.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.689][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:47.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:47.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.695][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:47.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:47.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.700][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:47.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:47.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.703][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.705][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:47.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:47.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.710][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:47.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:47.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.715][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:47.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:47.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.720][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:47.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:47.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.725][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:47.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:47.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.730][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:47.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:47.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.734][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.735][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:47.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:47.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.739][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.740][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:47.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:47.743][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.744][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.745][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:47.747][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:47.748][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.749][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.750][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:47.752][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:47.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.754][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.755][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:47.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:47.758][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.759][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.760][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:47.762][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:47.763][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.764][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.765][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:47.767][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:47.768][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.769][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.771][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:47.772][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:47.773][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.774][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.776][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:47.777][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:47.778][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.779][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.781][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:47.782][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:47.783][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.784][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.797][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171615005, 5-fluorospiro[indene-1,4'-tetrahydropyran], 5-fluorospiro[indene-1,4'-oxane], 5-fluorospiro[indene-1,4'-oxane], 5-fluoranylspiro[indene-1,4'-oxane], ...].
biodb.DEBUG[2024-07-13 16:04:47.798][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:47.800][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-07-13 16:04:47.804][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:47.806][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:47.807][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:47.813][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:47.814][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:47.815][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:47.816][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:47.824][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.18:226.2[MolecularWeight]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:47.829][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:47.832][cch$loadFileContent] Trying to load 1 files from cache: [1]: "69c19f6998e271aebdcd09a030d9b450".
biodb.TRACE[2024-07-13 16:04:47.835][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:47.838][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/69c19f6998e271aebdcd09a030d9b450.content".
biodb.DEBUG[2024-07-13 16:04:47.840][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:47.842][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:47.843][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:47.844][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:47.850][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:47.851][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:47.852][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:47.853][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:47.855][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:47.856][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:47.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.860][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:47.861][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:47.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.865][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:47.866][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:47.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.870][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:47.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:47.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.874][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.875][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:47.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:47.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.879][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.880][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:47.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:47.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.884][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.885][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:47.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:47.888][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.889][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:47.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:47.893][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:47.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:47.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.900][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:47.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:47.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.905][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:47.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:47.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:47.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:47.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.915][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:47.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:47.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.920][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:47.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:47.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.925][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:47.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:47.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:47.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:47.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:47.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:47.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.947][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:47.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:47.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.953][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:47.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:47.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.958][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:47.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:47.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.963][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:47.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:47.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.968][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:47.970][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:47.971][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.972][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.973][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:47.975][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:47.976][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.977][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.978][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:47.980][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:47.981][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.982][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.984][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:47.985][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:47.986][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.987][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.989][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:47.990][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:47.991][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.992][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.994][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:47.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:47.996][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:47.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:47.999][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:48.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:48.001][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.004][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:48.005][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:48.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.009][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:48.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:48.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.014][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:48.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:48.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.019][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:48.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:48.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.024][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:48.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:48.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.029][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:48.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:48.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.034][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:48.035][private$selectFields]
biodb.TRACE[2024-07-13 16:04:48.036][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:48.037][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:48.039][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:48.040][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:48.041][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:48.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.044][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.045][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:48.046][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:48.047][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.049][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.050][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:48.051][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:48.052][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.053][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.055][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:48.056][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:48.057][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.058][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.059][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:48.061][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:48.062][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.063][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.064][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:48.066][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:48.067][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.068][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.069][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:48.071][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:48.072][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.073][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.074][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:48.075][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:48.077][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.078][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.079][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:48.080][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:48.082][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.083][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.084][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:48.085][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:48.086][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.088][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.089][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:48.090][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:48.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.093][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.094][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:48.095][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:48.096][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.098][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.099][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:48.100][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:48.101][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.102][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.104][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:48.105][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:48.106][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.107][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.108][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:48.110][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:48.111][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.112][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.113][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:48.115][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:48.116][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.117][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.118][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:48.119][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:48.121][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.122][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.123][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:48.124][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:48.125][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.126][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.128][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:48.129][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:48.130][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.131][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.132][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:48.134][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:48.135][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.136][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.137][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:48.139][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:48.140][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.141][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.142][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:48.143][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:48.145][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.146][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.147][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:48.148][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:48.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.151][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.152][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:48.153][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:48.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.155][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.157][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:48.158][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:48.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.160][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.161][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:48.163][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:48.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.165][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.166][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:48.167][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:48.169][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.170][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.171][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:48.172][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:48.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.175][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.176][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:48.177][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:48.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.179][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.181][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:48.182][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:48.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.184][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.185][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:48.187][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:48.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.191][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.194][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:48.195][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:48.196][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.198][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.199][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:48.200][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:48.201][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.203][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.204][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:48.205][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:48.206][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.207][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.209][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:48.210][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:48.211][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:48.213][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:48.214][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.215][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.216][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:48.217][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:48.219][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.220][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.221][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:48.222][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:48.223][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.225][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.226][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:48.227][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:48.228][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.230][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.231][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:48.232][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:48.233][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.234][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.236][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:48.237][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:48.238][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.239][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.240][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:48.242][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:48.243][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.244][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.245][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:48.247][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:48.248][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.249][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.250][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:48.251][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:48.253][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.254][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.255][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:48.256][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:48.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.258][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.260][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:48.261][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:48.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.263][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.265][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:48.266][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:48.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.268][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.270][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:48.271][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:48.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.273][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.274][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:48.276][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:48.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.278][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.279][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:48.281][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:48.282][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.283][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.284][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:48.285][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:48.287][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.288][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.289][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-07-13 16:04:48.290][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:48.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:48.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.295][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:48.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:48.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.300][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:48.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:48.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.305][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:48.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:48.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.310][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:48.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:48.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:48.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:48.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:48.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:48.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.325][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:48.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:48.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.330][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:48.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:48.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.335][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:48.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:48.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.340][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:48.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:48.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.345][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:48.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:48.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.350][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:48.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:48.359][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.360][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.362][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:48.363][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:48.364][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.365][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.367][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:48.368][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:48.369][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.370][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.372][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:48.373][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:48.374][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.375][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.377][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:48.378][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:48.379][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.380][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.382][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:48.383][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:48.384][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.385][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.387][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:48.388][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:48.389][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.391][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.392][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:48.393][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:48.394][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.397][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:48.398][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:48.399][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.402][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:48.403][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:48.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.406][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.407][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:48.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:48.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.411][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.412][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:48.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:48.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.416][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.417][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:48.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:48.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.421][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.422][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:48.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:48.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.426][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.427][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:48.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:48.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.431][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.432][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:48.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:48.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.436][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.437][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:48.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:48.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.442][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:48.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:48.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.447][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:48.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:48.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.452][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:48.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:48.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.457][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:48.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:48.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.462][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:48.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:48.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.467][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:48.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:48.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.472][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:48.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:48.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.477][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:48.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:48.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.482][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:48.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:48.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.487][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:48.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:48.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.492][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:48.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:48.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.497][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:48.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:48.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.502][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:48.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:48.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.507][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:48.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:48.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.512][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:48.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:48.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.517][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:48.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:48.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.522][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:48.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:48.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.527][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:48.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:48.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.532][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:48.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:48.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.548][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171699478, 1-[(3S)-3,4-dihydroxy-5-methylene-tetrahydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(3S)-3,4-dihydroxy-5-methylene-2-oxolanyl]pyrimidine-2,4-dione, 1-[(3S)-3,4-dihydroxy-5-methylideneoxolan-2-yl]pyrimidine-2,4-dione, 1-[(3S)-5-methylidene-3,4-bis(oxidanyl)oxolan-2-yl]pyrimidine-2,4-dione, ...].
biodb.DEBUG[2024-07-13 16:04:48.549][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:48.550][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:48.551][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:48.557][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:48.559][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:48.560][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:48.561][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:48.562][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:48.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:48.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.566][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.567][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:48.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:48.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.571][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.572][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:48.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:48.575][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.576][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.577][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:48.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:48.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.581][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.582][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:48.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:48.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.586][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.587][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:48.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:48.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.591][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.592][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:48.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:48.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.596][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.597][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:48.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:48.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.602][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:48.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:48.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.607][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:48.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:48.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.612][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:48.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:48.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.616][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:48.618][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:48.619][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.621][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:48.623][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:48.624][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.625][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.626][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:48.628][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:48.629][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.631][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:48.633][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:48.634][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.635][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.636][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:48.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:48.639][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.640][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.641][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:48.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:48.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.646][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:48.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:48.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.651][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:48.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:48.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.656][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:48.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:48.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.661][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:48.662][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:48.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.666][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:48.667][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:48.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.671][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:48.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:48.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.676][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:48.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:48.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.680][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:48.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:48.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.685][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:48.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:48.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.690][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:48.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:48.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.695][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:48.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:48.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.700][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:48.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:48.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.705][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:48.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:48.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.710][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:48.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:48.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.715][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:48.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:48.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.720][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:48.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:48.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.725][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:48.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:48.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.729][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.730][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:48.731][private$selectFields]
biodb.TRACE[2024-07-13 16:04:48.732][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:48.734][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:48.735][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:48.736][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:48.737][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:48.738][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.740][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.741][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:48.742][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:48.743][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.744][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.746][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:48.747][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:48.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.749][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.750][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:48.752][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:48.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.754][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.755][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:48.757][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:48.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.759][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.767][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:48.768][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:48.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.771][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.772][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:48.774][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:48.775][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.776][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.777][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:48.778][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:48.780][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.781][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.782][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:48.783][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:48.785][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.786][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.787][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:48.788][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:48.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.791][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.792][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:48.793][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:48.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.796][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.797][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:48.798][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:48.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.800][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.802][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:48.803][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:48.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.805][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.807][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:48.808][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:48.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.810][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.812][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:48.813][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:48.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.815][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.816][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:48.818][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:48.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.820][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.821][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:48.823][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:48.824][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.825][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.826][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:48.828][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:48.829][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.830][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.831][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:48.833][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:48.834][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.835][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.836][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:48.838][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:48.839][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.840][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.841][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:48.843][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:48.844][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.845][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.846][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:48.848][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:48.849][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.850][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.851][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:48.853][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:48.854][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.855][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.856][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:48.858][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:48.859][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.860][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.861][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:48.863][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:48.864][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.865][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.866][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:48.868][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:48.869][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.870][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.871][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:48.872][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:48.874][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.875][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.876][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:48.878][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:48.879][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.881][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.882][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:48.883][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:48.884][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.886][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.887][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:48.888][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:48.889][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.890][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.892][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:48.893][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:48.894][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.895][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.897][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:48.898][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:48.899][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.900][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.902][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:48.903][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:48.904][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.905][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.906][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:48.908][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:48.909][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.910][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.911][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:48.913][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:48.914][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:48.915][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:48.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.918][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.919][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:48.920][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:48.921][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.923][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.924][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:48.925][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:48.926][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.927][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.929][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:48.930][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:48.931][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.932][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.934][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:48.935][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:48.936][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.937][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.938][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:48.940][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:48.941][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.942][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.943][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:48.945][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:48.946][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.947][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.948][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:48.950][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:48.951][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.952][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.953][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:48.954][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:48.956][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.957][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.958][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:48.959][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:48.961][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.962][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.963][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:48.964][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:48.965][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.967][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.968][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:48.969][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:48.970][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.971][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.973][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:48.974][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:48.975][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.976][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.978][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:48.979][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:48.980][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.981][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.983][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:48.984][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:48.985][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.986][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.988][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:48.989][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:48.990][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.991][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.993][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-07-13 16:04:48.994][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:48.995][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:48.997][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:48.998][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:48.999][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:49.000][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:49.002][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.003][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.004][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:49.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:49.007][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.008][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.009][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:49.011][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:49.012][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.013][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.014][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:49.016][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:49.017][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.018][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.019][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:49.021][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:49.022][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.023][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.025][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:49.026][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:49.027][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.028][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.030][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:49.031][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:49.032][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.035][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:49.036][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:49.037][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.038][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.040][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:49.041][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:49.042][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.045][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:49.046][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:49.047][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.050][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:49.051][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:49.052][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.053][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.055][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:49.056][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:49.057][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.059][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.060][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:49.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:49.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.064][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.065][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:49.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:49.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.069][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.070][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:49.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:49.073][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.074][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.075][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:49.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:49.078][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.079][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.080][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:49.081][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:49.083][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.084][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.085][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:49.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:49.088][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.089][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.090][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:49.092][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:49.093][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.094][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.095][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:49.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:49.098][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.099][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.100][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:49.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:49.103][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.104][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.105][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:49.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:49.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.109][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.110][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:49.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:49.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.115][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:49.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:49.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.120][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:49.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:49.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:49.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:49.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.131][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:49.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:49.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.136][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:49.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:49.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.141][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:49.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:49.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.146][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:49.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:49.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.151][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:49.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:49.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.156][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:49.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:49.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.161][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.166][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.171][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.183][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:49.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:49.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.188][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.189][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:49.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:49.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.194][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:49.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:49.197][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.199][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:49.201][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:49.202][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.204][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:49.206][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:49.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.209][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:49.211][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:49.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.215][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:49.216][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:49.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.219][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.220][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:49.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:49.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.225][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:49.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:49.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.230][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:49.232][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:49.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.235][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:49.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:49.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.240][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:49.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:49.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.257][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171652018, 1-(2,2,2-trifluoroethyl)indoline-5-carbonitrile, 1-(2,2,2-trifluoroethyl)-2,3-dihydroindole-5-carbonitrile, 1-(2,2,2-trifluoroethyl)-2,3-dihydroindole-5-carbonitrile, 1-[2,2,2-tris(fluoranyl)ethyl]-2,3-dihydroindole-5-carbonitrile, ...].
biodb.DEBUG[2024-07-13 16:04:49.259][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:49.260][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:49.261][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:49.267][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:49.269][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:49.270][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:49.271][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:49.273][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:49.274][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:49.275][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.276][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.278][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:49.279][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:49.280][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.281][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.283][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:49.284][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:49.285][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.287][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.288][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:49.289][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:49.291][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.292][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.293][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:49.295][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:49.296][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.297][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.298][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:49.300][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:49.301][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.302][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.303][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:49.305][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:49.306][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.307][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.309][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:49.310][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:49.311][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.312][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.314][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:49.315][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:49.316][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.317][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.319][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:49.320][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:49.321][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.322][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.324][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:49.325][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:49.326][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.327][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.329][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:49.330][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:49.331][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.332][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.334][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:49.335][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:49.336][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.337][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.339][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:49.340][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:49.341][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.342][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.344][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:49.345][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:49.346][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.349][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:49.350][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:49.351][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.354][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:49.355][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:49.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.359][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:49.360][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:49.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.364][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:49.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:49.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.368][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.369][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:49.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:49.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.373][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.374][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:49.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:49.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.378][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.379][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:49.381][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:49.382][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.383][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.384][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.386][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.387][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.388][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.389][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.391][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.392][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.393][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.394][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:49.396][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:49.397][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.398][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.399][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:49.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:49.402][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.403][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.404][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:49.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:49.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.409][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:49.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:49.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.414][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:49.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:49.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.419][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:49.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:49.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.423][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:49.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:49.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.428][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:49.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:49.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.433][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:49.434][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:49.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.438][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:49.439][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:49.440][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.443][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:49.444][private$selectFields]
biodb.TRACE[2024-07-13 16:04:49.445][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:49.446][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:49.447][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:49.449][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:49.450][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:49.451][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.452][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.453][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:49.455][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:49.456][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.457][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.458][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:49.460][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:49.461][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.462][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.463][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:49.464][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:49.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.467][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.468][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:49.469][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:49.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.471][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.473][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:49.474][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:49.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.476][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.477][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:49.479][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:49.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.481][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.482][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:49.484][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:49.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.486][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.487][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:49.488][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:49.489][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.491][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.492][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:49.493][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:49.494][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.495][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.497][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:49.498][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:49.499][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.500][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.501][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.503][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.504][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.505][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.506][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:49.507][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:49.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.510][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.511][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:49.512][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:49.513][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.514][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.516][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:49.517][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:49.518][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.519][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.520][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:49.522][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:49.523][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.524][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.525][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:49.527][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:49.528][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.529][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.530][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:49.531][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:49.533][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.534][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.535][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:49.536][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:49.537][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.538][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.540][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:49.541][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:49.542][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.543][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.544][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:49.546][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:49.547][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.548][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.549][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:49.551][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:49.552][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.553][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.554][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:49.555][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:49.557][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.558][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.559][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:49.560][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:49.561][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.562][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.564][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:49.565][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:49.566][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.567][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.568][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:49.570][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:49.571][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.572][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.573][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:49.574][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:49.576][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.577][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.578][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:49.579][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:49.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.582][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.583][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.584][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.591][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.593][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.594][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:49.596][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:49.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.598][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.599][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:49.601][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:49.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.603][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.604][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:49.606][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:49.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.608][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.609][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:49.610][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:49.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.613][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.614][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:49.615][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:49.616][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.618][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.619][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:49.620][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:49.621][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:49.623][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:49.624][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.625][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.626][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:49.627][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:49.629][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.630][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.631][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:49.632][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:49.633][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.635][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.636][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:49.637][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:49.638][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.639][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.641][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:49.642][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:49.643][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.644][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.645][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:49.647][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:49.648][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.649][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.650][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:49.652][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:49.653][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.654][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.655][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:49.656][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:49.658][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.659][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.660][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:49.661][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:49.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.663][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.665][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:49.666][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:49.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.668][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.669][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:49.671][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:49.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.673][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.674][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.676][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.678][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.679][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:49.680][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:49.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.683][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.684][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:49.685][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:49.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.688][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.689][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:49.690][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:49.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.692][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.694][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:49.695][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:49.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.697][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.699][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-07-13 16:04:49.700][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:49.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:49.702][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.705][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:49.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:49.707][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.710][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:49.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:49.712][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.715][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:49.716][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:49.717][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.720][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:49.721][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:49.722][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.725][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:49.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:49.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.730][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:49.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:49.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:49.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:49.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:49.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:49.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:49.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:49.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:49.751][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:49.752][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:49.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:49.757][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.758][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.759][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:49.761][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:49.762][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.763][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.764][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:49.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:49.767][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.768][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.769][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:49.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:49.772][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.773][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.774][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:49.776][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:49.777][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.778][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.779][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:49.780][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:49.782][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.783][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.784][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:49.785][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:49.787][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.788][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.789][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:49.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:49.792][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.793][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.794][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:49.796][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:49.797][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.799][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:49.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:49.802][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.804][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:49.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:49.807][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:49.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:49.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:49.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:49.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.819][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:49.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:49.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.824][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:49.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:49.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.829][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:49.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:49.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.834][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:49.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:49.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.839][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:49.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:49.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.844][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:49.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:49.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.849][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:49.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:49.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.854][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:49.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:49.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.858][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:49.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:49.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.863][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.868][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.873][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.878][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:49.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:49.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.883][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:49.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:49.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.888][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:49.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:49.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.893][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:49.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:49.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.897][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.898][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:49.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:49.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.903][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:49.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:49.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.908][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:49.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:49.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.913][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:49.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:49.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.917][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:49.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:49.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.922][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:49.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:49.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.927][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:49.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:49.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.932][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:49.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:49.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.948][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171652005, 4-[(3,3-difluorocyclobutyl)amino]-2-fluoro-benzonitrile, 4-[(3,3-difluorocyclobutyl)amino]-2-fluorobenzonitrile, 4-[(3,3-difluorocyclobutyl)amino]-2-fluorobenzonitrile, 4-[[3,3-bis(fluoranyl)cyclobutyl]amino]-2-fluoranyl-benzenecarbonitrile, ...].
biodb.DEBUG[2024-07-13 16:04:49.950][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:49.951][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-13 16:04:49.959][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.961][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.962][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.963][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.965][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.966][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.967][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.968][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.970][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.972][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.973][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.975][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.977][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.978][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.980][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.981][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.982][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.985][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.986][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.987][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:49.995][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:49.996][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.998][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:49.999][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.002][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:50.003][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:50.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:50.010][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:50.011][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:50.012][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:50.019][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:50.020][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:50.021][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:50.022][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:50.030][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:50.035][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:50.036][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-07-13 16:04:50.038][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:50.040][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-07-13 16:04:50.042][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:50.044][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:50.045][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:50.046][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:50.052][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:50.054][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:50.055][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:50.056][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:50.057][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:50.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:50.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.062][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:50.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:50.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.066][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.067][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:50.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:50.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.071][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.072][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:50.073][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:50.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.076][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.077][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:50.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:50.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.081][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.082][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:50.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:50.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.087][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:50.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:50.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.091][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:50.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:50.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:50.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:50.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:50.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:50.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.106][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:50.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:50.108][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.111][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:50.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:50.113][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.114][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.116][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:50.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:50.118][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.119][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.121][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:50.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:50.123][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.124][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.125][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:50.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:50.128][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.129][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.130][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:50.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:50.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.135][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:50.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:50.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.140][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:50.141][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:50.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.145][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:50.146][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:50.147][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.150][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:50.151][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:50.152][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.153][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.155][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:50.156][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:50.157][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.158][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.159][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:50.161][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:50.162][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.163][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.164][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:50.166][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:50.167][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.168][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.169][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:50.171][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:50.172][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.173][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.174][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:50.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:50.177][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.178][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.179][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:50.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:50.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.183][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.184][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:50.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:50.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.189][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:50.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:50.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.192][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.194][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:50.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:50.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.197][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.198][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:50.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:50.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.202][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.203][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:50.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:50.206][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.207][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.208][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:50.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:50.211][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.212][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.213][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:50.214][private$selectFields]
biodb.TRACE[2024-07-13 16:04:50.215][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:50.216][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:50.218][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:50.219][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:50.220][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:50.221][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.222][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.224][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:50.225][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:50.226][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.227][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.228][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:50.230][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:50.231][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.232][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.234][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:50.235][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:50.236][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.237][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.238][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:50.240][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:50.241][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.242][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.243][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:50.245][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:50.246][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.247][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.248][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:50.249][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:50.250][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.252][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.253][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:50.254][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:50.255][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.256][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.258][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:50.259][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:50.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.261][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.262][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:50.264][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:50.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.266][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.267][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:50.268][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:50.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.271][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.272][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:50.273][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:50.274][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.275][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.277][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:50.278][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:50.279][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.280][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.281][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:50.283][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:50.284][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.285][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.286][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:50.288][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:50.289][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.290][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.291][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:50.292][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:50.293][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.295][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.296][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:50.297][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:50.298][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.299][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.301][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:50.302][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:50.303][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.304][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.305][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:50.307][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:50.308][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.309][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.310][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:50.311][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:50.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.314][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.315][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:50.316][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:50.317][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.319][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.320][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:50.321][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:50.322][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.323][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.324][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:50.326][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:50.327][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.328][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.329][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:50.331][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:50.332][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.333][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.334][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:50.335][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:50.336][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.338][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.339][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:50.340][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:50.341][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.343][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.344][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:50.345][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:50.346][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.347][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.349][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:50.350][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:50.351][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.352][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.354][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:50.355][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:50.356][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.357][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.358][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:50.360][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:50.361][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.362][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.363][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:50.365][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:50.366][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.367][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.368][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:50.369][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:50.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.372][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.373][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:50.374][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:50.376][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:50.377][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:50.378][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.379][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.380][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:50.382][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:50.383][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.384][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.385][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:50.387][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:50.388][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.389][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.390][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:50.391][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:50.393][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.394][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.395][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:50.396][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:50.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.406][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.407][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:50.409][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:50.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.411][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.412][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:50.414][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:50.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.416][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.417][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:50.419][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:50.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.421][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.422][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:50.423][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:50.425][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.426][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.427][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:50.428][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:50.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.431][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.432][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:50.433][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:50.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.436][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.437][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:50.438][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:50.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.440][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.442][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:50.443][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:50.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.445][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.447][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:50.448][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:50.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.450][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.452][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:50.453][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:50.454][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.455][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.457][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:50.458][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:50.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.460][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.462][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-07-13 16:04:50.463][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:50.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:50.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.468][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:50.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:50.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.473][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:50.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:50.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.478][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:50.479][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:50.480][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.483][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:50.484][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:50.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.488][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:50.489][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:50.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.493][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:50.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:50.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.498][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:50.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:50.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.502][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:50.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:50.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.507][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:50.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:50.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.512][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:50.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:50.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.517][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:50.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:50.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.522][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:50.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:50.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.527][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:50.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:50.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.532][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:50.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:50.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.537][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:50.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:50.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.542][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:50.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:50.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.547][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:50.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:50.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.552][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:50.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:50.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.557][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:50.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:50.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.562][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:50.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:50.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.567][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:50.568][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:50.569][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.570][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.572][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:50.573][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:50.574][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.575][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.577][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:50.578][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:50.579][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.580][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.582][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:50.583][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:50.584][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.585][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.586][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:50.588][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:50.589][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.590][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.591][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:50.593][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:50.594][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.595][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.596][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:50.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:50.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.601][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:50.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:50.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.606][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:50.607][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:50.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.611][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:50.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:50.614][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.615][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.616][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:50.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:50.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.620][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.621][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:50.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:50.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.626][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:50.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:50.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.630][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.631][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:50.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:50.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.636][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:50.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:50.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.641][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:50.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:50.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.644][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.645][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:50.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:50.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.649][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.650][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:50.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:50.653][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.654][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.655][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:50.657][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:50.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.660][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:50.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:50.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.665][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:50.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:50.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.670][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:50.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:50.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.675][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:50.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:50.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.678][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.680][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:50.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:50.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.683][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.685][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:50.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:50.687][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.688][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.690][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:50.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:50.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.693][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.694][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:50.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:50.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.698][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.710][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171715183, trideca-2,5,8-triyne-1,13-diol, trideca-2,5,8-triyne-1,13-diol, trideca-2,5,8-triyne-1,13-diol, trideca-2,5,8-triyne-1,13-diol, ...].
biodb.DEBUG[2024-07-13 16:04:50.712][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:50.713][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:50.714][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:50.720][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:50.721][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:50.722][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:50.723][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:50.725][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:50.726][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:50.727][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.730][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:50.731][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:50.732][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.734][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:50.736][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:50.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.739][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:50.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:50.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.744][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:50.745][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:50.747][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.748][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.749][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:50.750][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:50.751][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.753][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.754][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:50.755][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:50.756][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.757][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.759][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:50.760][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:50.761][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.762][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.763][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:50.765][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:50.766][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.767][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.768][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:50.770][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:50.771][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.772][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.773][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:50.775][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:50.776][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.777][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.778][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:50.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:50.781][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.782][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.783][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:50.784][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:50.785][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.787][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.788][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:50.789][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:50.790][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.793][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:50.794][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:50.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.797][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:50.799][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:50.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.807][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.809][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:50.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:50.812][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.814][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:50.816][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:50.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.819][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:50.821][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:50.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.824][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:50.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:50.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.829][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:50.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:50.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.834][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:50.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:50.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.839][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:50.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:50.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.844][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:50.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:50.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.849][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:50.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:50.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.852][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.854][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:50.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:50.856][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.857][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.858][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:50.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:50.861][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.862][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.863][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:50.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:50.866][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.868][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:50.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:50.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.872][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.873][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:50.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:50.876][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.877][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.878][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:50.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:50.881][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.882][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.883][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:50.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:50.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.887][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.888][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:50.889][private$selectFields]
biodb.TRACE[2024-07-13 16:04:50.890][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:50.892][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:50.893][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:50.894][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:50.895][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:50.896][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.898][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.899][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:50.900][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:50.901][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.902][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.904][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:50.905][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:50.906][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.907][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.908][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:50.910][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:50.911][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.912][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.913][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:50.914][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:50.916][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.917][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.918][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:50.919][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:50.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.922][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.923][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:50.924][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:50.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.926][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.928][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:50.929][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:50.930][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.931][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.932][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:50.934][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:50.935][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.936][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.937][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:50.939][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:50.940][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.941][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.942][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:50.943][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:50.945][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.946][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.947][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:50.948][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:50.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.951][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.952][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:50.953][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:50.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.955][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.957][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:50.958][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:50.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.960][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.961][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:50.963][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:50.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.965][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.966][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:50.968][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:50.969][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.970][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.971][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:50.972][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:50.974][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.975][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.976][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:50.977][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:50.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.980][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.981][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:50.982][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:50.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.984][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.986][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:50.987][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:50.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.989][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.990][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:50.992][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:50.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.994][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:50.995][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:50.997][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:50.998][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:50.999][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.000][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:51.001][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:51.003][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.004][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.005][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:51.006][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:51.007][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.008][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.010][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:51.011][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:51.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.013][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.014][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:51.016][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:51.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.018][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.019][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:51.020][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:51.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.023][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.024][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:51.025][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:51.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.027][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.029][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:51.030][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:51.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.032][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.033][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:51.035][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:51.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.037][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.038][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:51.040][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:51.041][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.042][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.043][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:51.045][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:51.046][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.047][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.048][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:51.050][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:51.051][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:51.052][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:51.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.055][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.056][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:51.057][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:51.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.059][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.061][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:51.062][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:51.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.064][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.065][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:51.067][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:51.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.069][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.070][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:51.072][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:51.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.074][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.075][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:51.077][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:51.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.079][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.080][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:51.081][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:51.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.084][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.085][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:51.086][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:51.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.089][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.090][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:51.091][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:51.092][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.094][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.095][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:51.096][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:51.097][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.098][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.100][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:51.101][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:51.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.103][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.105][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:51.106][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:51.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.108][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.109][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:51.111][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:51.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.113][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.114][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:51.116][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:51.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.118][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.119][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:51.120][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:51.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.123][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.124][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:51.125][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:51.126][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.128][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.129][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-07-13 16:04:51.130][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:51.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:51.133][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.134][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.135][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:51.137][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:51.138][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.139][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.140][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:51.142][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:51.143][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.144][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.145][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:51.147][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:51.148][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.149][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.150][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:51.152][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:51.153][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.154][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.155][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:51.157][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:51.158][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.159][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.160][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:51.162][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:51.163][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.164][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.165][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:51.167][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:51.168][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.169][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.170][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:51.172][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:51.173][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.174][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.175][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:51.177][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:51.178][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.179][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.180][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:51.182][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:51.183][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.184][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.185][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:51.187][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:51.188][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.189][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.191][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:51.192][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:51.193][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.194][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.195][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:51.197][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:51.198][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.199][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.200][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:51.202][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:51.203][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.204][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.206][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:51.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:51.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.217][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.218][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:51.220][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:51.221][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.222][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.223][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:51.225][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:51.226][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.227][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.228][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:51.230][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:51.231][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.232][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.233][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:51.235][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:51.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.238][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:51.240][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:51.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.244][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:51.245][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:51.246][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.249][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:51.250][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:51.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.254][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:51.255][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:51.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.259][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:51.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:51.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.264][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:51.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:51.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.268][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.269][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:51.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:51.272][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.274][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:51.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:51.277][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.278][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.279][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:51.281][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:51.282][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.284][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:51.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:51.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.289][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:51.291][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:51.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.294][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:51.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:51.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.299][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:51.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:51.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.304][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:51.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:51.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.309][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:51.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:51.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.314][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:51.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:51.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.319][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:51.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:51.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.324][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:51.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:51.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.328][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.329][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:51.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:51.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.333][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.335][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:51.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:51.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.338][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.340][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:51.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:51.342][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.343][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.345][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:51.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:51.347][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.348][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.350][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:51.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:51.352][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.353][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.355][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:51.356][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:51.357][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.358][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.360][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:51.361][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:51.362][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.363][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.365][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:51.366][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:51.367][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.370][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:51.371][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:51.372][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.375][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:51.376][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:51.377][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.392][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171715181, trideca-3,6,9-triyne-1,13-diol, trideca-3,6,9-triyne-1,13-diol, trideca-3,6,9-triyne-1,13-diol, trideca-3,6,9-triyne-1,13-diol, ...].
biodb.DEBUG[2024-07-13 16:04:51.393][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:51.394][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:51.395][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:51.402][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:51.403][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:51.404][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:51.405][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:51.407][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:51.408][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:51.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.412][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:51.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:51.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.417][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:51.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:51.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.422][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:51.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:51.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.427][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:51.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:51.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.432][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:51.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:51.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.437][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:51.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:51.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.441][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.442][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:51.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:51.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.447][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:51.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:51.449][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.452][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:51.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:51.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.457][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:51.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:51.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:51.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:51.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.467][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:51.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:51.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.470][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.472][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:51.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:51.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.475][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.477][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:51.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:51.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.480][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:51.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:51.484][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.485][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:51.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:51.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:51.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:51.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.497][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:51.498][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:51.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.502][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:51.503][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:51.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.507][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:51.508][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:51.509][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.512][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:51.513][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:51.514][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.517][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:51.518][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:51.519][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.520][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.521][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:51.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:51.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.526][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:51.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:51.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.530][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.531][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:51.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:51.534][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.535][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.536][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:51.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:51.539][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.540][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.541][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:51.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:51.544][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.545][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.546][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:51.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:51.549][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.550][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.551][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:51.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:51.554][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.555][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.556][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:51.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:51.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.560][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.561][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:51.563][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:51.564][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.565][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.566][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:51.567][private$selectFields]
biodb.TRACE[2024-07-13 16:04:51.569][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:51.570][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:51.571][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:51.572][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:51.574][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:51.575][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.576][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.577][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:51.578][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:51.580][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.581][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.582][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:51.583][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:51.585][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.586][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.587][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:51.588][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:51.590][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.591][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.592][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:51.593][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:51.594][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.596][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.597][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:51.598][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:51.599][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.601][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.602][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:51.603][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:51.604][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.605][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.607][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:51.608][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:51.609][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.610][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.612][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:51.613][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:51.614][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.615][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.617][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:51.618][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:51.626][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.627][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.629][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:51.630][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:51.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.633][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.634][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:51.636][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:51.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.638][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.639][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:51.641][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:51.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.643][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.644][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:51.646][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:51.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.648][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.649][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:51.651][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:51.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.653][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.654][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:51.656][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:51.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.658][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.660][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:51.661][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:51.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.663][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.665][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:51.666][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:51.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.668][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.670][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:51.671][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:51.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.674][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.675][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:51.676][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:51.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.679][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.680][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:51.681][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:51.682][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.684][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.685][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:51.686][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:51.687][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.689][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.690][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:51.691][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:51.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.694][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.695][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:51.696][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:51.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.699][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.700][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:51.701][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:51.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.704][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.705][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:51.706][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:51.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.709][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.710][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:51.711][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:51.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.714][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.715][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:51.716][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:51.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.719][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.720][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:51.721][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:51.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.723][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.725][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:51.726][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:51.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.728][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.730][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:51.731][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:51.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.733][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.735][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:51.736][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:51.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.738][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.740][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:51.741][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:51.742][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:51.743][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:51.745][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.746][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.747][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:51.748][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:51.750][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.751][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.752][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:51.753][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:51.755][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.756][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.757][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:51.758][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:51.759][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.761][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.762][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:51.763][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:51.764][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.766][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.767][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:51.768][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:51.769][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.771][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.772][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:51.773][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:51.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.776][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.777][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:51.778][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:51.779][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.780][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.782][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:51.783][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:51.784][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.785][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.787][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:51.788][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:51.789][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.790][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.792][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:51.793][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:51.794][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.795][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.796][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:51.798][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:51.799][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.800][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.802][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:51.803][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:51.804][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.805][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.807][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:51.808][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:51.809][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.811][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.812][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:51.813][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:51.814][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.816][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.817][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:51.818][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:51.819][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.821][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.822][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-07-13 16:04:51.823][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:51.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:51.826][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.827][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.828][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:51.830][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:51.831][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.832][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.833][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:51.835][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:51.836][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.837][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.839][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:51.840][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:51.841][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.842][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.844][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:51.845][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:51.846][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.847][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.849][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:51.850][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:51.851][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.853][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.854][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:51.855][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:51.857][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.858][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.859][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:51.860][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:51.862][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.863][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.864][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:51.865][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:51.867][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.868][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.869][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:51.871][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:51.872][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.874][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:51.876][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:51.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.879][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:51.881][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:51.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.885][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:51.886][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:51.887][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.890][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:51.891][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:51.892][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.894][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.895][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:51.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:51.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.900][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:51.902][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:51.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:51.907][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:51.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.911][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:51.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:51.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.916][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:51.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:51.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.921][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:51.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:51.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.926][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:51.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:51.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.930][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.931][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:51.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:51.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.935][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.936][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:51.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:51.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.942][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:51.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:51.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.947][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:51.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:51.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.952][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:51.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:51.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.957][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:51.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:51.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.962][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:51.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:51.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.967][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:51.969][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:51.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.972][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:51.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:51.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.978][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:51.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:51.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.983][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:51.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:51.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.988][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:51.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:51.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.993][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:51.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:51.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:51.997][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:51.998][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:51.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:52.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.002][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.003][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:52.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:52.006][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.007][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.008][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:52.010][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:52.011][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.012][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.013][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:52.015][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:52.016][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.017][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.018][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:52.020][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:52.021][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.022][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.024][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:52.025][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:52.026][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.027][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.029][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:52.030][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:52.031][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.033][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.034][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:52.035][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:52.036][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.047][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:52.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:52.051][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.052][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.054][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:52.055][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:52.056][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.058][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.059][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:52.061][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:52.062][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.063][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.065][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:52.066][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:52.067][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.068][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.070][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:52.071][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:52.072][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.073][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.075][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:52.076][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:52.077][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.078][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.091][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171699432, 4-[(1S)-1-methylpropyl]-2-(2-pyridyl)-4,5-dihydrooxazole, 4-[(2S)-butan-2-yl]-2-(2-pyridinyl)-4,5-dihydrooxazole, 4-[(2S)-butan-2-yl]-2-pyridin-2-yl-4,5-dihydro-1,3-oxazole, 4-[(2S)-butan-2-yl]-2-pyridin-2-yl-4,5-dihydro-1,3-oxazole, ...].
biodb.DEBUG[2024-07-13 16:04:52.093][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:52.094][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-07-13 16:04:52.099][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:52.100][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:52.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:52.107][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:52.109][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:52.110][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:52.111][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:52.119][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:52.124][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:52.125][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-07-13 16:04:52.127][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:52.129][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-07-13 16:04:52.131][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:52.134][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:52.135][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:52.136][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:52.142][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:52.143][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:52.145][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:52.146][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:52.147][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:52.149][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:52.150][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.151][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.152][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:52.154][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:52.155][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.156][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.157][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:52.159][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:52.160][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.162][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:52.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:52.165][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.166][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:52.169][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:52.170][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.171][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.173][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:52.174][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:52.175][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.176][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.178][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:52.179][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:52.180][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.181][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.183][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:52.184][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:52.185][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.186][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.188][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:52.189][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:52.190][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.191][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.193][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:52.194][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:52.195][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.196][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.197][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:52.199][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:52.200][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.201][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.202][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:52.204][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:52.205][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.206][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.207][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:52.209][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:52.210][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.211][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.212][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:52.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:52.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.217][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:52.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:52.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.222][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:52.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:52.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.227][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:52.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:52.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.232][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:52.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:52.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.237][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:52.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:52.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.242][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:52.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:52.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.247][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:52.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:52.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.251][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:52.253][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:52.254][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.255][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.256][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:52.258][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:52.259][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.260][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.261][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:52.263][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:52.264][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.265][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.266][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:52.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:52.269][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.270][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.271][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:52.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:52.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.275][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.276][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:52.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:52.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:52.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:52.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.286][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:52.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:52.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.290][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:52.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:52.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.295][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:52.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:52.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.300][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:52.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:52.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.305][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:52.306][private$selectFields]
biodb.TRACE[2024-07-13 16:04:52.307][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:52.309][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:52.310][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:52.311][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:52.312][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:52.313][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.315][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.316][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:52.317][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:52.318][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.319][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.321][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:52.322][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:52.323][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.324][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.326][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:52.327][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:52.328][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.329][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.330][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:52.332][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:52.333][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.334][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.335][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:52.336][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:52.338][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.339][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.340][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:52.341][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:52.342][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.344][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.345][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:52.346][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:52.347][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.348][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.350][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:52.351][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:52.352][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.353][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.354][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:52.356][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:52.357][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.358][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.359][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:52.361][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:52.362][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.363][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.364][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:52.365][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:52.367][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.368][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.369][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:52.370][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:52.371][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.372][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.374][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:52.375][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:52.376][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.377][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.378][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:52.380][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:52.381][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.382][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.383][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:52.385][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:52.386][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.387][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.388][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:52.389][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:52.391][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.392][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.393][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:52.394][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:52.395][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.397][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.398][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:52.399][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:52.400][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.401][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.403][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:52.404][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:52.405][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.406][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.407][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:52.409][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:52.410][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.411][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.412][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:52.414][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:52.415][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.416][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.417][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:52.418][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:52.420][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.421][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.422][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:52.423][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:52.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.426][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.427][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:52.428][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:52.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.430][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.432][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:52.433][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:52.434][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.435][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.436][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:52.438][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:52.439][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.440][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.441][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:52.443][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:52.444][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.445][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.446][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:52.447][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:52.449][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.456][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.458][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:52.459][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:52.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.462][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.463][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:52.464][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:52.466][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.467][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.468][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:52.469][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:52.471][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.472][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.473][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-07-13 16:04:52.474][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-07-13 16:04:52.475][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:52.477][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:52.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.479][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.480][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:52.482][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:52.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.484][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.485][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:52.486][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:52.488][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.489][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.490][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:52.491][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:52.493][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.494][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.495][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:52.496][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:52.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.499][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.500][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:52.501][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:52.502][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.503][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.505][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:52.506][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:52.507][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.508][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.510][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:52.511][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:52.512][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.513][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.514][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:52.516][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:52.517][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.518][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.519][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:52.521][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:52.522][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.523][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.524][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:52.526][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:52.527][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.528][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.529][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:52.530][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:52.532][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.533][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.534][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:52.535][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:52.536][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.538][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.539][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:52.540][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:52.541][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.542][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.544][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:52.545][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:52.546][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.547][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.549][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-07-13 16:04:52.550][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:52.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:52.552][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.555][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:52.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:52.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.560][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:52.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:52.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.565][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:52.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:52.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.569][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.570][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:52.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:52.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.574][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.575][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:52.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:52.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.580][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:52.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:52.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.584][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.585][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:52.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:52.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.589][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.590][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:52.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:52.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.595][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:52.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:52.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.599][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.600][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:52.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:52.603][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.604][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.605][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:52.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:52.608][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.609][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.610][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:52.612][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:52.613][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.614][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.615][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:52.617][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:52.618][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.619][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.620][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:52.622][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:52.623][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.624][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.626][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:52.627][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:52.628][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.629][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.631][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:52.632][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:52.633][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.634][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.636][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:52.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:52.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.641][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:52.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:52.644][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.646][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:52.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:52.649][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.651][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:52.652][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:52.654][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.655][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.656][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:52.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:52.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.661][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:52.663][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:52.664][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.665][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.666][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:52.668][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:52.669][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.670][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.672][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:52.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:52.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.675][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.677][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:52.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:52.679][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.680][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.682][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:52.683][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:52.684][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.687][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:52.688][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:52.690][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.691][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.692][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:52.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:52.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.697][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:52.699][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:52.700][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.701][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.703][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:52.704][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:52.705][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.706][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.708][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:52.709][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:52.710][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.711][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.713][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:52.714][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:52.715][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.716][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.718][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:52.719][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:52.720][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.721][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.723][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:52.724][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:52.725][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.726][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.728][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:52.729][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:52.730][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.731][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.733][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:52.734][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:52.735][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.736][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.738][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:52.739][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:52.740][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.741][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.743][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:52.744][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:52.745][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.746][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.748][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:52.749][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:52.750][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.751][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.753][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:52.754][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:52.755][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.756][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.757][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:52.759][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:52.760][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.761][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.763][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:52.764][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:52.765][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.767][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:52.769][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:52.770][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.772][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:52.774][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:52.775][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.788][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171702946, 1-(azetidin-3-yl)piperidin-4-one;dihydrochloride, 1-(3-azetidinyl)-4-piperidinone;dihydrochloride, 1-(azetidin-3-yl)piperidin-4-one;dihydrochloride, 1-(azetidin-3-yl)piperidin-4-one;dihydrochloride, ...].
biodb.DEBUG[2024-07-13 16:04:52.789][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:52.790][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:52.791][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:52.798][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:52.799][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:52.800][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:52.801][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:52.802][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:52.804][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:52.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.807][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:52.809][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:52.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.812][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:52.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:52.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.817][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:52.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:52.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:52.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:52.825][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.827][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:52.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:52.830][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.832][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:52.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:52.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.837][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:52.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:52.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.842][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:52.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:52.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.845][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:52.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:52.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.850][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:52.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:52.854][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.857][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:52.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:52.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.867][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.868][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:52.870][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:52.871][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.873][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.874][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:52.875][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:52.877][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.878][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.879][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:52.880][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:52.882][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.883][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.884][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:52.885][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:52.886][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.888][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.889][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:52.890][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:52.891][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.893][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.894][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:52.895][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:52.896][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.898][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.899][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:52.900][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:52.901][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.903][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.904][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:52.905][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:52.906][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.908][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.909][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:52.910][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:52.911][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.913][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.914][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:52.915][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:52.916][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.918][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.919][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:52.920][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:52.921][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.923][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.924][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:52.925][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:52.926][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.927][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.929][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:52.930][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:52.931][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.932][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.934][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:52.935][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:52.936][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.939][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:52.940][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:52.941][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.944][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:52.945][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:52.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.949][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:52.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:52.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.954][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:52.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:52.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.959][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:52.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:52.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.963][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:52.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:52.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.968][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:52.970][private$selectFields]
biodb.TRACE[2024-07-13 16:04:52.971][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:52.972][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:52.973][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:52.974][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:52.976][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:52.977][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.978][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.979][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:52.980][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:52.982][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.983][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.984][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:52.985][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:52.987][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.988][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.989][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:52.990][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:52.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.993][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.994][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:52.995][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:52.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:52.998][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:52.999][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:53.000][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:53.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.002][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.004][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:53.005][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:53.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.007][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.008][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:53.010][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:53.011][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.012][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.013][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:53.015][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:53.016][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.017][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.018][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:53.020][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:53.021][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.022][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.023][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:53.024][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:53.026][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.027][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.028][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:53.029][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:53.031][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.032][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.033][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:53.034][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:53.036][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.037][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.038][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:53.039][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:53.040][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.042][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.043][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:53.044][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:53.045][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.046][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.048][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:53.049][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:53.050][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.051][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.053][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:53.054][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:53.055][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.056][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.058][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:53.059][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:53.060][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.061][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.062][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:53.064][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:53.065][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.066][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.067][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:53.069][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:53.070][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.071][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.072][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:53.074][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:53.075][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.076][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.077][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:53.078][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:53.080][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.081][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.082][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:53.083][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:53.084][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.086][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.087][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:53.088][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:53.089][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.090][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.092][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:53.093][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:53.094][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.095][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.097][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:53.098][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:53.099][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.100][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.101][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:53.103][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:53.104][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.105][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.106][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:53.108][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:53.109][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.110][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.111][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:53.112][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:53.114][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.115][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.116][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:53.117][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:53.118][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.120][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.121][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:53.122][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:53.123][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.125][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.126][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:53.127][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:53.128][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.129][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.131][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:53.132][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:53.133][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:53.134][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:53.136][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.137][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.138][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:53.139][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:53.141][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.142][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.143][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:53.144][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:53.146][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.147][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.148][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:53.149][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:53.151][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.152][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.153][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:53.154][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:53.156][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.157][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.158][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:53.159][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:53.161][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.162][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.163][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:53.164][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:53.165][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.167][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.168][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:53.169][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:53.170][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.171][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.173][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:53.174][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:53.175][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.176][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.177][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:53.179][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:53.180][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.181][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.182][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:53.183][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:53.185][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.186][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.187][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:53.188][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:53.189][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.191][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.192][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:53.193][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:53.194][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.195][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.197][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:53.198][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:53.199][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.200][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.201][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:53.203][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:53.204][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.205][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.206][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:53.208][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:53.209][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.210][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.211][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-07-13 16:04:53.213][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:53.214][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:53.215][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.216][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.218][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:53.219][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:53.220][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.221][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.223][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:53.224][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:53.225][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.226][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.228][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:53.229][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:53.230][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.231][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.233][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:53.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:53.235][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.236][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.238][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:53.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:53.240][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.241][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.243][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:53.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:53.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:53.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:53.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:53.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:53.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.258][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:53.260][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:53.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:53.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:53.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.273][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.275][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:53.276][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:53.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.281][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:53.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:53.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.286][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:53.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:53.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.291][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:53.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:53.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.296][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:53.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:53.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.301][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:53.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:53.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.306][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:53.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:53.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.311][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:53.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:53.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.316][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:53.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:53.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.321][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:53.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:53.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.326][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:53.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:53.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.330][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.331][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:53.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:53.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.335][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.336][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:53.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:53.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.341][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:53.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:53.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.345][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.346][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:53.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:53.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.351][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:53.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:53.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.356][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:53.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:53.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.361][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:53.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:53.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.366][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:53.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:53.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.371][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:53.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:53.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.376][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:53.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:53.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.381][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:53.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:53.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.386][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:53.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:53.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.391][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:53.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:53.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.394][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.396][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:53.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:53.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.399][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.401][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:53.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:53.403][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.404][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.406][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:53.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:53.408][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.409][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.411][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:53.412][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:53.413][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.414][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.416][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:53.417][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:53.418][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.419][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.421][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:53.422][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:53.423][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.424][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.426][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:53.427][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:53.428][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.431][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:53.432][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:53.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.436][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:53.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:53.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.440][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:53.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:53.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.446][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:53.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:53.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.449][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.451][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:53.452][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:53.453][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.454][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.456][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:53.457][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:53.458][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.459][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.472][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171699478, 1-[(3S)-3,4-dihydroxy-5-methylene-tetrahydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(3S)-3,4-dihydroxy-5-methylene-2-oxolanyl]pyrimidine-2,4-dione, 1-[(3S)-3,4-dihydroxy-5-methylideneoxolan-2-yl]pyrimidine-2,4-dione, 1-[(3S)-5-methylidene-3,4-bis(oxidanyl)oxolan-2-yl]pyrimidine-2,4-dione, ...].
biodb.DEBUG[2024-07-13 16:04:53.473][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:53.474][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:53.475][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:53.481][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:53.483][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:53.484][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:53.485][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:53.486][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:53.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:53.489][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.490][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.491][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:53.493][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:53.494][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.495][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.496][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:53.497][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:53.499][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.500][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.501][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:53.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:53.504][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.505][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.506][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:53.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:53.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.510][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.511][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:53.512][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:53.513][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.515][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.516][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:53.517][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:53.518][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.519][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.521][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:53.522][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:53.523][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.524][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.526][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:53.527][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:53.528][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.529][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.530][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:53.532][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:53.533][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.534][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.535][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:53.537][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:53.538][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.539][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.540][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:53.542][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:53.543][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.544][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.545][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:53.546][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:53.548][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.549][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.550][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:53.551][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:53.553][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.554][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.555][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:53.556][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:53.557][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.559][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.560][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:53.561][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:53.562][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.564][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.565][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:53.566][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:53.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.570][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:53.571][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:53.572][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.575][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:53.576][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:53.577][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.579][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:53.581][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:53.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.584][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:53.586][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:53.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.589][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:53.591][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:53.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.594][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:53.595][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:53.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.599][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:53.600][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:53.601][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.604][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:53.605][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:53.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.609][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:53.610][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:53.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.614][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:53.615][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:53.616][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.619][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:53.620][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:53.621][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.622][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.623][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:53.625][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:53.626][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.627][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.628][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:53.630][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:53.631][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.632][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.633][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:53.635][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:53.636][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.637][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.638][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:53.639][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:53.641][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.642][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.643][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:53.644][private$selectFields]
biodb.TRACE[2024-07-13 16:04:53.645][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:53.647][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:53.648][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:53.649][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:53.650][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:53.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.653][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.654][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:53.655][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:53.656][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.658][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.659][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:53.660][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:53.661][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.662][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.664][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:53.665][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:53.666][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.667][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.668][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:53.670][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:53.671][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.672][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.680][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:53.681][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:53.683][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.684][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.685][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:53.687][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:53.688][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.689][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.690][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:53.692][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:53.693][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.694][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.695][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:53.696][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:53.698][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.699][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.700][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:53.701][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:53.703][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.704][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.705][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:53.706][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:53.707][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.709][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.710][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:53.711][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:53.712][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.714][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.715][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:53.716][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:53.717][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.718][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.720][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:53.721][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:53.722][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.723][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.725][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:53.726][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:53.727][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.728][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.730][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:53.731][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:53.732][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.733][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.735][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:53.736][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:53.737][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.738][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.739][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:53.741][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:53.742][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.743][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.744][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:53.746][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:53.747][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.748][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.749][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:53.751][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:53.752][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.753][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.754][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:53.756][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:53.757][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.758][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.759][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:53.761][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:53.762][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.763][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.764][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:53.766][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:53.767][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.768][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.769][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:53.771][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:53.772][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.773][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.774][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:53.775][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:53.777][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.778][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.779][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:53.780][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:53.781][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.783][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.784][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:53.785][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:53.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.788][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.789][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:53.790][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:53.791][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.793][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.794][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:53.795][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:53.796][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.797][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.799][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:53.800][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:53.801][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.802][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.804][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:53.805][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:53.806][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.807][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.809][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:53.810][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:53.811][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.812][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.813][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:53.815][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:53.816][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:53.817][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:53.818][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.820][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.821][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:53.822][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:53.823][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.824][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.826][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:53.827][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:53.828][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.829][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.831][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:53.832][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:53.833][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.834][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.835][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:53.837][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:53.838][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.839][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.840][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:53.842][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:53.843][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.844][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.845][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:53.847][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:53.848][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.849][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.850][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:53.851][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:53.853][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.854][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.855][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:53.856][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:53.857][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.859][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.860][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:53.861][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:53.862][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.863][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.865][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:53.866][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:53.867][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.868][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.869][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:53.871][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:53.872][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.873][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.874][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:53.876][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:53.877][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.878][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.879][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:53.880][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:53.882][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.883][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.884][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:53.885][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:53.886][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.888][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.889][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:53.890][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:53.891][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.892][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.894][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-07-13 16:04:53.895][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:53.896][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:53.898][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.899][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.900][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:53.901][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:53.903][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.904][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.905][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:53.906][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:53.908][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.909][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.910][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:53.912][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:53.913][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.914][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.915][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:53.917][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:53.918][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.919][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.920][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:53.922][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:53.923][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.924][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.925][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:53.927][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:53.928][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.929][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.930][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:53.932][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:53.933][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.934][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.935][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:53.937][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:53.938][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.939][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.940][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:53.942][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:53.943][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.944][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.945][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:53.947][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:53.948][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.949][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.950][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:53.952][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:53.953][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.954][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.955][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:53.957][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:53.958][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.959][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.960][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:53.962][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:53.963][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.964][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.965][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:53.967][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:53.968][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.969][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.970][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:53.972][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:53.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.975][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:53.977][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:53.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.980][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:53.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:53.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.985][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:53.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:53.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.990][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:53.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:53.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:53.995][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:53.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:53.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:53.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.000][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:54.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:54.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.006][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:54.007][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:54.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.011][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:54.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:54.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.016][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:54.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:54.019][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.020][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.021][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:54.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:54.024][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.025][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.026][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:54.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:54.029][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.030][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.031][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:54.033][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:54.034][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.035][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.036][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:54.038][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:54.039][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.040][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.041][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:54.043][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:54.044][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.045][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.046][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:54.048][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:54.049][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.050][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.051][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:54.053][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:54.054][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.056][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:54.058][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:54.059][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.060][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.061][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:54.063][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:54.064][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.065][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.066][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:54.068][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:54.069][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.070][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.071][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:54.072][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:54.074][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.075][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.076][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:54.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:54.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.092][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:54.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:54.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.096][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.097][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:54.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:54.100][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.101][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.103][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:54.104][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:54.105][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.107][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.108][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:54.109][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:54.110][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.112][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.113][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:54.114][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:54.115][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.117][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.118][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:54.119][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:54.120][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.122][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.123][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:54.124][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:54.125][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.127][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.128][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:54.129][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:54.130][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.132][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.133][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:54.134][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:54.136][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.137][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.138][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:54.139][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:54.141][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.142][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.143][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:54.144][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:54.146][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.147][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.160][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171651179, 1-fluoro-N-[(3R,4S)-4-fluoropyrrolidin-3-yl]cyclopropanesulfonamide, 1-fluoro-N-[(3R,4S)-4-fluoro-3-pyrrolidinyl]-1-cyclopropanesulfonamide, 1-fluoro-N-[(3R,4S)-4-fluoropyrrolidin-3-yl]cyclopropane-1-sulfonamide, 1-fluoranyl-N-[(3R,4S)-4-fluoranylpyrrolidin-3-yl]cyclopropane-1-sulfonamide, ...].
biodb.DEBUG[2024-07-13 16:04:54.161][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:54.162][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-07-13 16:04:54.174][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:54.175][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:54.176][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:54.182][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:54.183][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:54.184][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:54.185][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:54.194][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=204.11358306:204.13358306[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:54.198][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:54.199][cch$loadFileContent] Trying to load 1 files from cache: [1]: "1279ae7853bbae0b1c59971aee79ce72".
biodb.TRACE[2024-07-13 16:04:54.201][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:54.203][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/1279ae7853bbae0b1c59971aee79ce72.content".
biodb.DEBUG[2024-07-13 16:04:54.205][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:54.207][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:54.208][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:54.209][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:54.215][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:54.216][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:54.217][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:54.218][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:54.220][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:54.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:54.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.224][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.225][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:54.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:54.228][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.229][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.230][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:54.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:54.233][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.234][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.235][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:54.237][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:54.238][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.239][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.240][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:54.242][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:54.243][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.244][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.245][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:54.247][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:54.248][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.249][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.250][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:54.252][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:54.253][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.254][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.255][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:54.257][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:54.258][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.259][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.260][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:54.262][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:54.263][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.264][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.265][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:54.267][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:54.268][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.270][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:54.272][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:54.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.276][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:54.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:54.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.281][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:54.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:54.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.286][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:54.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:54.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.291][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:54.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:54.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.294][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.296][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:54.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:54.298][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.299][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.301][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:54.302][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:54.303][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.304][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.306][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:54.307][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:54.308][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.309][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.311][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:54.312][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:54.313][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.314][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.316][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:54.317][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:54.318][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.319][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.321][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:54.322][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:54.323][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.324][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.326][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:54.327][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:54.328][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.331][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:54.332][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:54.333][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.336][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:54.337][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:54.338][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.341][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:54.342][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:54.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.346][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:54.347][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:54.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.351][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:54.352][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:54.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.355][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:54.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:54.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.360][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:54.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:54.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.366][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:54.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:54.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.371][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:54.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:54.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.376][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:54.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:54.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.381][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:54.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:54.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.386][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:54.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:54.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.389][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.390][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:54.392][private$selectFields]
biodb.TRACE[2024-07-13 16:04:54.393][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:54.394][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:54.395][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:54.397][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:54.398][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:54.399][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.400][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.401][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:54.403][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:54.404][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.405][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.406][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:54.408][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:54.409][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.410][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.411][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:54.413][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:54.414][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.415][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.416][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:54.417][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:54.419][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.420][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.421][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:54.422][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:54.424][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.425][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.426][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:54.427][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:54.429][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.430][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.431][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:54.432][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:54.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.435][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.436][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:54.437][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:54.438][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.440][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.441][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:54.442][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:54.443][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.444][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.446][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:54.447][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:54.448][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.449][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.451][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:54.452][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:54.453][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.454][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.455][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:54.457][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:54.458][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.459][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.460][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:54.462][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:54.463][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.464][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.465][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:54.467][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:54.468][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.469][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.470][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:54.472][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:54.473][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.474][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.475][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:54.476][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:54.478][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.479][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.480][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:54.481][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:54.483][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.484][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.485][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:54.486][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:54.487][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.489][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.490][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:54.491][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:54.492][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.494][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.495][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:54.496][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:54.497][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.505][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.507][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:54.508][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:54.509][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.511][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.512][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:54.514][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:54.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.516][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.517][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:54.519][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:54.520][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.521][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.522][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:54.524][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:54.525][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.526][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.527][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:54.529][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:54.530][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.531][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.532][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:54.534][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:54.535][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.536][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.537][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:54.539][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:54.540][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.541][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.542][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:54.544][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:54.545][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.546][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.547][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:54.549][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:54.550][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.551][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.552][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:54.554][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:54.555][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.556][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.557][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:54.559][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:54.560][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.561][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.562][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:54.564][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:54.565][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.566][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.567][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:54.569][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:54.570][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.571][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.572][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:54.573][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:54.575][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:54.576][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:54.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.578][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.580][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:54.581][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:54.582][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.583][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.585][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:54.586][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:54.587][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.588][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.590][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:54.591][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:54.592][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.593][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.594][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:54.596][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:54.597][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.598][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.599][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:54.601][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:54.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.603][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.604][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:54.606][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:54.607][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.608][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.609][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:54.611][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:54.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.613][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.614][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:54.615][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:54.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.618][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.619][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:54.620][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:54.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.623][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.624][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:54.625][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:54.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.628][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.629][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:54.630][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:54.631][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.633][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.634][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:54.635][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:54.636][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.638][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.639][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:54.640][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:54.641][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.642][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.644][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:54.645][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:54.646][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.647][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.649][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:54.650][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:54.651][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.652][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.654][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-07-13 16:04:54.655][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:54.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:54.658][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.660][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:54.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:54.663][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.665][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:54.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:54.668][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.669][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.670][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:54.672][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:54.673][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.675][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:54.677][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:54.678][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.680][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:54.682][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:54.683][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.686][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:54.687][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:54.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.691][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:54.692][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:54.693][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.696][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:54.697][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:54.698][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.701][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:54.702][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:54.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.705][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.706][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:54.707][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:54.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.711][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:54.712][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:54.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.716][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:54.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:54.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.720][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.721][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:54.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:54.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.725][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.726][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:54.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:54.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.731][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:54.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:54.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.736][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:54.737][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:54.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.741][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:54.742][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:54.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.746][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:54.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:54.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.751][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:54.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:54.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.756][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:54.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:54.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.761][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:54.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:54.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.765][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.766][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:54.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:54.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.770][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.771][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:54.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:54.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.775][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.776][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:54.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:54.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.780][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.781][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:54.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:54.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.785][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.786][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:54.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:54.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.790][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.792][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:54.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:54.794][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.795][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.796][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:54.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:54.799][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.800][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.801][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:54.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:54.804][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.805][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.807][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:54.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:54.809][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.810][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.812][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:54.813][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:54.814][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.815][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.817][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:54.818][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:54.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.822][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:54.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:54.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.825][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.827][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:54.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:54.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.830][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.832][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:54.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:54.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.835][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.837][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:54.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:54.839][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.842][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:54.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:54.844][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.847][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:54.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:54.849][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.852][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:54.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:54.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.857][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:54.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:54.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.862][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:54.864][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:54.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.867][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:54.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:54.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.872][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:54.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:54.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.877][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:54.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:54.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.883][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:54.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:54.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.888][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:54.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:54.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.893][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:54.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:54.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.909][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171715183, trideca-2,5,8-triyne-1,13-diol, trideca-2,5,8-triyne-1,13-diol, trideca-2,5,8-triyne-1,13-diol, trideca-2,5,8-triyne-1,13-diol, ...].
biodb.DEBUG[2024-07-13 16:04:54.911][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:54.918][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:54.920][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:54.927][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:54.928][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:54.929][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:54.930][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:54.932][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:54.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:54.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.937][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:54.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:54.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.942][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:54.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:54.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.947][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:54.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:54.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.952][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:54.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:54.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.957][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:54.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:54.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.962][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:54.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:54.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.967][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:54.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:54.970][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.972][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:54.973][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:54.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.977][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:54.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:54.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.981][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.982][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:54.984][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:54.985][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.986][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.987][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:54.989][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:54.990][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.991][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.992][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:54.994][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:54.995][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:54.996][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:54.997][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:54.999][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:55.000][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.001][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.002][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:55.004][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:55.005][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.006][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.007][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:55.009][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:55.010][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.011][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.013][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:55.014][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:55.015][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.016][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.018][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:55.019][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:55.020][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.021][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.023][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:55.024][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:55.025][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.026][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.028][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:55.029][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:55.030][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.031][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.033][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:55.034][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:55.035][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.036][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.038][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:55.039][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:55.040][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.041][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.043][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:55.044][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:55.045][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.046][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.048][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:55.049][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:55.050][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.051][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.053][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:55.054][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:55.055][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.056][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.058][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:55.059][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:55.060][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.061][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.063][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:55.064][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:55.065][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.067][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.068][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:55.069][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:55.070][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.072][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.073][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:55.074][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:55.075][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.077][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.078][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:55.079][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:55.080][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.082][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.083][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:55.084][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:55.086][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.087][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.088][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:55.089][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:55.091][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.092][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.093][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:55.094][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:55.096][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.097][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.098][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:55.099][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:55.101][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.102][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.103][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:55.104][private$selectFields]
biodb.TRACE[2024-07-13 16:04:55.105][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:55.107][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:55.108][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:55.109][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:55.110][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:55.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.113][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.114][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:55.115][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:55.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.118][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.119][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:55.120][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:55.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.123][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.124][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:55.125][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:55.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.128][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.129][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:55.130][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:55.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.133][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.134][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:55.136][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:55.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.138][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.139][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:55.141][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:55.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.143][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.144][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:55.146][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:55.147][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.148][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.149][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:55.151][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:55.152][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.153][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.154][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:55.156][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:55.157][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.158][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.159][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:55.161][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:55.162][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.163][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.164][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:55.166][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:55.167][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.168][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.169][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:55.171][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:55.172][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.173][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.174][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:55.176][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:55.177][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.178][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.179][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:55.181][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:55.182][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.183][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.184][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:55.186][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:55.187][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.188][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.189][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:55.191][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:55.192][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.193][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.195][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:55.196][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:55.197][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.198][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.200][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:55.201][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:55.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.203][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.205][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:55.206][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:55.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.208][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.210][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:55.211][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:55.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.214][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.215][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:55.216][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:55.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.219][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.220][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:55.221][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:55.222][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.224][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.225][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:55.226][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:55.227][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.229][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.230][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:55.231][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:55.232][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.233][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.235][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:55.236][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:55.237][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.238][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.240][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:55.241][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:55.242][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.243][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.245][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:55.246][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:55.247][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.248][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.250][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:55.251][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:55.252][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.253][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.255][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:55.256][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:55.257][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.258][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.260][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:55.261][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:55.262][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.263][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.265][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:55.266][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:55.267][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.268][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.270][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:55.271][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:55.272][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.274][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.275][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:55.276][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:55.277][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.279][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.280][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:55.281][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:55.282][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:55.284][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:55.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.286][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.287][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:55.289][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:55.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.291][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.292][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:55.294][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:55.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.296][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.297][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:55.299][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:55.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.301][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.302][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:55.304][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:55.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.306][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.307][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:55.309][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:55.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.311][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.312][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:55.314][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:55.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.316][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.317][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:55.319][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:55.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.321][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.322][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:55.324][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:55.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.326][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.327][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:55.335][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:55.337][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.338][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.340][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:55.342][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:55.343][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.344][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.346][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:55.347][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:55.348][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.350][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.351][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:55.352][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:55.354][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.355][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.356][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:55.357][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:55.359][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.360][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.361][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:55.362][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:55.364][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.365][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.366][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:55.367][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:55.369][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.370][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.371][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-07-13 16:04:55.373][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:55.374][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:55.375][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.376][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.378][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:55.379][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:55.380][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.382][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.383][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:55.384][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:55.386][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.387][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.388][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:55.390][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:55.391][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.392][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.393][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:55.395][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:55.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.399][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:55.400][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:55.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.404][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:55.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:55.407][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.408][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.409][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:55.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:55.412][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.413][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.414][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:55.416][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:55.417][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.418][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.420][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:55.421][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:55.422][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.423][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.425][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:55.426][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:55.427][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.429][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.430][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:55.431][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:55.433][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.434][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.435][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:55.437][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:55.438][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.439][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.440][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:55.442][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:55.443][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.444][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.446][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:55.447][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:55.448][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.450][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.451][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:55.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:55.454][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.455][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.456][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:55.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:55.459][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.460][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.462][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:55.463][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:55.464][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.465][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.467][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:55.468][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:55.469][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.472][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:55.473][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:55.474][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.477][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:55.478][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:55.479][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.481][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.482][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:55.483][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:55.485][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.486][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.487][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:55.488][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:55.490][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.491][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.492][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:55.494][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:55.495][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.496][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.497][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:55.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:55.500][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.501][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.502][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:55.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:55.505][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.506][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.507][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:55.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:55.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.511][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.512][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:55.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:55.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.516][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.517][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:55.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:55.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.522][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:55.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:55.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.528][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:55.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:55.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.533][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:55.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:55.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.538][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:55.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:55.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.543][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:55.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:55.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.548][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:55.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:55.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.552][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.553][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:55.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:55.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.557][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.558][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:55.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:55.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.563][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:55.564][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:55.565][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.567][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.568][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:55.569][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:55.570][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.573][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:55.574][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:55.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.577][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.578][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:55.579][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:55.580][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.582][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.583][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:55.584][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:55.585][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.587][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.588][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:55.589][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:55.591][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.592][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.593][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:55.594][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:55.596][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.597][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.598][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:55.599][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:55.600][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.602][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.603][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:55.604][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:55.606][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.607][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.608][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:55.609][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:55.611][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.612][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.613][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:55.614][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:55.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.617][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.629][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171715181, trideca-3,6,9-triyne-1,13-diol, trideca-3,6,9-triyne-1,13-diol, trideca-3,6,9-triyne-1,13-diol, trideca-3,6,9-triyne-1,13-diol, ...].
biodb.DEBUG[2024-07-13 16:04:55.631][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:55.632][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:55.633][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:55.639][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:55.640][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:55.641][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:55.642][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:55.644][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:55.645][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:55.646][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.649][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:55.650][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:55.651][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.652][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.654][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:55.655][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:55.656][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.657][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.659][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:55.660][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:55.661][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.662][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.664][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:55.665][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:55.666][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.667][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.669][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:55.670][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:55.671][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.672][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.674][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:55.675][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:55.676][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.677][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.679][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:55.680][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:55.681][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.682][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.683][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:55.685][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:55.686][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.687][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.689][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:55.690][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:55.691][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.692][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.694][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:55.695][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:55.696][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.697][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.699][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:55.700][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:55.701][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.702][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.704][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:55.705][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:55.706][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.708][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.709][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:55.710][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:55.711][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.713][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.714][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:55.715][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:55.716][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.718][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.719][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:55.720][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:55.721][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.723][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.724][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:55.725][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:55.726][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.728][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.729][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:55.730][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:55.731][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.733][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.734][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:55.735][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:55.737][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.738][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.739][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:55.741][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:55.742][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.743][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.744][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:55.746][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:55.753][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.756][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:55.757][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:55.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.762][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:55.763][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:55.764][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.766][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.767][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:55.768][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:55.769][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.771][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.772][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:55.773][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:55.774][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.776][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.777][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:55.778][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:55.779][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.782][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:55.783][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:55.784][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.786][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.787][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:55.788][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:55.789][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.791][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.792][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:55.793][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:55.795][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.796][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.797][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:55.798][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:55.800][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.801][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.802][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:55.803][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:55.805][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.806][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.807][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:55.808][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:55.810][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.811][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.812][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:55.814][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:55.815][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.816][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.817][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:55.819][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:55.820][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.821][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.822][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:55.823][private$selectFields]
biodb.TRACE[2024-07-13 16:04:55.825][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:55.826][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:55.827][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:55.828][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:55.830][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:55.831][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.832][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.833][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:55.835][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:55.836][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.837][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.838][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:55.840][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:55.841][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.842][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.843][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:55.844][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:55.846][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.847][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.848][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:55.850][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:55.851][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.852][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.853][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:55.855][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:55.856][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.857][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.858][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:55.859][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:55.861][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.862][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.863][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:55.864][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:55.866][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.867][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.868][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:55.869][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:55.870][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.872][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.873][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:55.874][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:55.876][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.877][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.878][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:55.879][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:55.880][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.882][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.883][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:55.884][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:55.885][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.887][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.888][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:55.889][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:55.890][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.892][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.893][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:55.894][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:55.895][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.896][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.898][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:55.899][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:55.900][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.901][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.902][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:55.904][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:55.905][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.906][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.907][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:55.909][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:55.910][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.911][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.912][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:55.914][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:55.915][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.916][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.917][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:55.918][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:55.920][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.921][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.922][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:55.923][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:55.925][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.926][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.927][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:55.928][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:55.929][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.931][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.932][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:55.933][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:55.934][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.936][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.937][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:55.938][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:55.939][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.940][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.942][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:55.943][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:55.944][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.945][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.947][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:55.948][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:55.949][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.950][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.951][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:55.953][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:55.954][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.955][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.956][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:55.958][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:55.959][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.960][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.961][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:55.962][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:55.964][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.965][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.966][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:55.967][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:55.968][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.970][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.971][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:55.972][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:55.973][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.974][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.976][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:55.977][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:55.978][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.979][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.981][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:55.982][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:55.983][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.984][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.985][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:55.987][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:55.988][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.989][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.990][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:55.992][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:55.993][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:55.994][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:55.995][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:55.996][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:55.998][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:55.999][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:56.000][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.001][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.002][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:56.004][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:56.005][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.006][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.007][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:56.009][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:56.010][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.011][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.012][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:56.013][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:56.015][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.016][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.017][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:56.018][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:56.019][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.021][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.022][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:56.023][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:56.024][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.025][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.027][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:56.028][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:56.029][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.030][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.031][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:56.033][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:56.034][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.035][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.036][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:56.038][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:56.039][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.040][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.041][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:56.042][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:56.044][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.045][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.046][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:56.047][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:56.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.050][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.051][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:56.052][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:56.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.054][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.056][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:56.057][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:56.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.059][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.060][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:56.062][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:56.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.064][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.065][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:56.067][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:56.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.069][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.070][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:56.071][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:56.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.074][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.075][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-07-13 16:04:56.076][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:56.078][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:56.079][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.080][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:56.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:56.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:56.087][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:56.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.091][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:56.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:56.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:56.098][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:56.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:56.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:56.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.106][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:56.108][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:56.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.111][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:56.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:56.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.116][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:56.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:56.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.121][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:56.122][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:56.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.126][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:56.127][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:56.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.131][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:56.132][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:56.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:56.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:56.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.141][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:56.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:56.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.146][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:56.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:56.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.151][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:56.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:56.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.161][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.163][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:56.164][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:56.166][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.167][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.168][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:56.170][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:56.171][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.172][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.174][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:56.175][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:56.176][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.177][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.179][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:56.180][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:56.181][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.182][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.184][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:56.185][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:56.186][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.187][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.189][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:56.190][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:56.191][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.193][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.194][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:56.195][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:56.196][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.198][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.199][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:56.200][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:56.201][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.203][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.204][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:56.205][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:56.207][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.208][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.209][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:56.210][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:56.212][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.213][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.214][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:56.215][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:56.217][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.218][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.219][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:56.221][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:56.222][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.223][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.224][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:56.226][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:56.227][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.228][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.229][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:56.231][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:56.232][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.233][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.234][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:56.236][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:56.237][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.238][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.239][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:56.241][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:56.242][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.243][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.244][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:56.246][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:56.247][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.248][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.250][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:56.251][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:56.252][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.253][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.255][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:56.256][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:56.257][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.258][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.260][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:56.261][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:56.262][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.263][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.265][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:56.266][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:56.267][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.269][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.270][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:56.271][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:56.273][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.274][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.275][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:56.277][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:56.278][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.279][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.281][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:56.282][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:56.283][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.284][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.286][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:56.287][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:56.288][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.289][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.291][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:56.292][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:56.293][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.295][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.296][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:56.297][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:56.299][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.300][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.301][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:56.303][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:56.304][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.305][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.306][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:56.308][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:56.309][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.310][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.311][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:56.313][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:56.314][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.315][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.317][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:56.318][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:56.319][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.320][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.322][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:56.323][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:56.324][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.325][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.338][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171699432, 4-[(1S)-1-methylpropyl]-2-(2-pyridyl)-4,5-dihydrooxazole, 4-[(2S)-butan-2-yl]-2-(2-pyridinyl)-4,5-dihydrooxazole, 4-[(2S)-butan-2-yl]-2-pyridin-2-yl-4,5-dihydro-1,3-oxazole, 4-[(2S)-butan-2-yl]-2-pyridin-2-yl-4,5-dihydro-1,3-oxazole, ...].
biodb.DEBUG[2024-07-13 16:04:56.340][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:56.341][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.DEBUG[2024-07-13 16:04:56.346][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:56.347][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:56.348][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:56.354][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:56.355][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:56.357][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:56.358][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:56.366][self$getBiodb()$getRequestScheduler( ...] Getting content of get URL request "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esearch.fcgi?db=pccompound&term=226.04897142:226.06897142[MonoisotopicMass]&retmax=3".
biodb.DEBUG[2024-07-13 16:04:56.371][self$getBiodb()$getRequestScheduler( ...] Loading content of request from cache.
biodb.TRACE[2024-07-13 16:04:56.372][cch$loadFileContent] Trying to load 1 files from cache: [1]: "6eb047352a5797ace7dc0cd8f5af7cbf".
biodb.TRACE[2024-07-13 16:04:56.374][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:56.376][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.comp-e80afa72f6aa7425ca0c72f99f7b9d75/6eb047352a5797ace7dc0cd8f5af7cbf.content".
biodb.DEBUG[2024-07-13 16:04:56.378][private$bdb$entriesToDataframe] 3 entrie(s) to convert in data frame.
biodb.DEBUG[2024-07-13 16:04:56.380][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:56.381][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:56.382][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:56.388][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:56.389][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:56.390][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:56.392][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:56.393][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:56.394][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:56.396][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.397][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.398][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:56.399][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:56.401][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.402][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.403][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:56.405][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:56.406][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.407][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.408][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:56.410][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:56.411][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.412][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.413][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:56.415][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:56.416][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.417][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.418][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:56.420][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:56.421][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.422][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.423][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:56.425][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:56.426][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.427][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.428][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:56.430][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:56.431][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.432][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.433][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:56.435][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:56.436][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.437][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.438][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:56.440][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:56.441][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.442][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.444][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:56.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:56.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.448][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:56.450][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:56.451][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.452][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.453][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:56.455][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:56.456][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.457][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.458][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:56.460][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:56.461][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.462][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.463][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:56.465][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:56.466][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.468][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:56.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:56.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.473][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:56.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:56.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.478][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:56.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:56.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.483][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:56.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:56.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.488][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:56.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:56.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.493][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:56.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:56.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.498][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:56.499][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:56.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.503][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:56.504][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:56.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.507][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.508][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:56.509][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:56.510][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.512][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.513][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:56.514][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:56.515][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.517][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.518][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:56.519][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:56.520][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.521][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.523][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:56.524][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:56.525][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.526][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.528][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:56.529][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:56.530][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.533][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:56.534][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:56.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.537][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:56.539][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:56.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.542][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:56.544][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:56.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.547][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:56.549][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:56.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.552][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:56.553][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:56.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.557][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:56.558][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:56.559][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.561][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.562][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:56.563][private$selectFields]
biodb.TRACE[2024-07-13 16:04:56.564][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:56.565][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:56.567][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:56.568][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:56.569][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:56.577][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.578][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.580][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:56.581][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:56.583][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.584][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.585][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:56.587][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:56.588][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.589][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.590][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:56.591][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:56.593][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.594][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.595][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:56.596][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:56.598][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.599][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.600][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:56.601][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:56.602][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.604][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.605][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:56.606][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:56.608][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.609][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.610][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:56.611][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:56.612][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.614][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.615][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:56.616][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:56.617][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.619][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.620][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:56.621][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:56.622][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.624][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.625][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:56.626][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:56.627][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.628][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.630][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:56.631][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:56.632][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.633][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.635][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:56.636][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:56.637][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.638][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.640][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:56.641][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:56.642][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.643][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.645][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:56.646][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:56.647][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.648][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.649][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:56.651][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:56.652][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.653][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.654][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:56.656][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:56.657][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.658][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.659][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:56.661][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:56.662][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.663][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.664][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:56.666][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:56.667][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.668][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.669][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:56.670][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:56.672][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.673][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.674][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:56.675][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:56.677][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.678][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.679][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:56.680][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:56.681][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.683][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.684][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:56.685][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:56.686][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.687][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.689][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:56.690][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:56.691][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.692][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.694][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:56.695][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:56.696][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.697][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.699][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:56.700][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:56.701][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.702][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.703][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:56.705][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:56.706][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.707][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.708][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:56.710][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:56.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.712][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.713][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:56.715][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:56.716][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.717][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.718][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:56.720][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:56.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.722][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.723][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:56.725][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:56.726][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.727][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.728][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:56.730][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:56.731][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.732][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.733][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:56.735][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:56.736][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.737][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.738][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:56.739][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:56.741][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.742][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.743][private$selectFields] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-07-13 16:04:56.744][private$organizeFieldsByGroups] Fields [15]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, molecular.mass, ..."
biodb.TRACE[2024-07-13 16:04:56.746][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:56.747][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:56.748][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.749][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.750][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:56.752][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:56.753][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.754][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.755][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:56.757][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:56.758][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.759][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.760][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:56.762][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:56.763][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.764][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.765][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:56.767][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:56.768][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.769][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.770][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:56.772][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:56.773][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.774][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.775][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:56.776][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:56.778][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.779][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.780][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:56.781][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:56.783][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.784][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.785][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:56.786][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:56.787][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.789][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.790][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:56.791][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:56.792][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.793][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.795][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:56.796][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:56.797][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.798][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.800][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:56.801][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:56.802][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.803][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.804][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:56.806][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:56.807][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.808][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.809][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:56.811][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:56.812][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.813][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.814][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:56.816][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:56.817][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.818][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.819][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-07-13 16:04:56.821][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:56.822][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:56.823][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.824][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.826][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:56.827][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:56.828][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.829][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.830][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:56.832][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:56.833][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.834][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.836][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:56.837][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:56.838][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.839][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.841][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:56.842][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:56.843][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.844][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.846][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:56.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:56.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.851][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:56.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:56.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.855][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.856][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:56.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:56.859][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.860][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.861][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:56.862][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:56.864][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.865][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.866][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:56.868][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:56.869][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.870][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.871][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:56.873][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:56.874][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.875][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.876][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:56.878][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:56.879][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.880][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.881][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:56.883][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:56.884][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.885][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.886][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:56.888][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:56.889][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.890][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.891][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:56.893][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:56.894][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.895][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.897][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:56.898][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:56.899][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.900][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.902][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:56.903][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:56.904][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.905][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.906][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:56.908][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:56.909][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.910][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.912][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:56.913][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:56.914][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.915][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.917][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:56.918][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:56.919][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.920][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.922][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:56.923][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:56.924][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.925][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.927][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:56.928][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:56.929][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.932][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:56.933][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:56.934][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.937][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:56.938][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:56.939][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.940][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.942][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:56.943][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:56.944][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.947][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:56.948][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:56.949][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.952][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:56.953][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:56.954][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.957][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:56.958][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:56.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.962][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:56.963][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:56.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.967][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:56.968][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:56.969][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.971][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.972][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:56.974][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:56.975][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.976][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.977][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:56.979][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:56.980][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.988][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.989][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:56.991][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:56.992][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.993][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:56.995][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:56.996][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:56.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:56.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.000][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:57.001][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:57.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.005][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:57.006][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:57.008][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.009][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.010][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:57.012][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:57.013][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.014][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.015][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:57.017][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:57.018][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.019][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.020][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:57.022][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:57.023][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.024][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.026][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:57.027][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:57.028][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.029][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.031][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:57.032][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:57.033][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.034][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.036][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:57.037][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:57.038][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.039][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.041][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:57.042][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:57.043][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.044][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.046][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:57.047][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:57.048][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.049][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.051][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:57.052][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:57.053][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.055][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.067][private$entriesToListOfDataframes] Entry converted to data frame: [1, 15]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171702946, 1-(azetidin-3-yl)piperidin-4-one;dihydrochloride, 1-(3-azetidinyl)-4-piperidinone;dihydrochloride, 1-(azetidin-3-yl)piperidin-4-one;dihydrochloride, 1-(azetidin-3-yl)piperidin-4-one;dihydrochloride, ...].
biodb.DEBUG[2024-07-13 16:04:57.068][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:57.069][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:57.070][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:57.076][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:57.078][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:57.079][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:57.080][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:57.081][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:57.083][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:57.084][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.085][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.086][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:57.088][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:57.089][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.090][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.091][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:57.093][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:57.094][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.095][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.096][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:57.097][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:57.099][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.100][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.101][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:57.102][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:57.104][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.105][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.106][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:57.107][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:57.109][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.110][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.111][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:57.112][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:57.114][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.115][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.116][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:57.117][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:57.119][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.120][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.121][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:57.123][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:57.124][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.125][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.126][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:57.128][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:57.129][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.130][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.131][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:57.133][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:57.134][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.135][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.136][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:57.138][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:57.139][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.140][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.141][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:57.143][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:57.144][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.145][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.146][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:57.148][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:57.149][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.150][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.151][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:57.153][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:57.154][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.155][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.156][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:57.158][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:57.159][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.160][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.161][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:57.163][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:57.164][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.165][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.166][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:57.168][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:57.169][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.170][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.171][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:57.173][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:57.174][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.175][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.176][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:57.178][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:57.179][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.180][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.181][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:57.183][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:57.184][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.185][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.186][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:57.188][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:57.189][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.190][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.191][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:57.193][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:57.194][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.195][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.196][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:57.198][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:57.199][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.200][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.202][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:57.203][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:57.204][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.205][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.206][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:57.208][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:57.209][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.210][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.211][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:57.213][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:57.214][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.215][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.216][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:57.218][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:57.219][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.220][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.221][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:57.223][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:57.224][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.225][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.226][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:57.228][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:57.229][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.230][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.231][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:57.233][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:57.234][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.235][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.236][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:57.238][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:57.239][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.240][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.241][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:57.243][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:57.244][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.245][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.246][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:57.248][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:57.249][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.250][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.251][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:57.252][private$selectFields]
biodb.TRACE[2024-07-13 16:04:57.254][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:57.255][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:57.256][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:57.257][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:57.259][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:57.260][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.261][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.262][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:57.264][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:57.265][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.266][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.267][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:57.269][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:57.270][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.271][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.272][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:57.274][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:57.275][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.276][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.277][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:57.279][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:57.280][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.281][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.282][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:57.284][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:57.285][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.286][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.287][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:57.289][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:57.290][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.291][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.292][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:57.294][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:57.295][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.296][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.297][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:57.299][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:57.300][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.301][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.302][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:57.304][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:57.305][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.306][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.307][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:57.309][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:57.310][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.311][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.312][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:57.314][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:57.315][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.316][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.317][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:57.319][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:57.320][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.321][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.322][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:57.324][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:57.325][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.326][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.327][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:57.329][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:57.330][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.331][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.332][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:57.334][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:57.335][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.336][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.337][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:57.339][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:57.340][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.341][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.342][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:57.344][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:57.345][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.346][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.347][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:57.349][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:57.350][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.351][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.352][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:57.354][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:57.355][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.356][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.358][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:57.359][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:57.360][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.361][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.363][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:57.364][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:57.365][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.366][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.368][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:57.369][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:57.370][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.371][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.373][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:57.374][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:57.375][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.376][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.378][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:57.379][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:57.380][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.381][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.383][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:57.384][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:57.385][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.386][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.388][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:57.389][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:57.390][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.392][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.393][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:57.401][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:57.403][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.404][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.405][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:57.407][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:57.408][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.410][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.411][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:57.412][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:57.413][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.414][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.416][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:57.417][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:57.418][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.419][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.421][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:57.422][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:57.423][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.424][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.426][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:57.427][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:57.428][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.429][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.430][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:57.432][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:57.433][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.434][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.435][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:57.437][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:57.438][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:57.439][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:57.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.442][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.443][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:57.444][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:57.445][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.447][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.448][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:57.449][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:57.450][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.452][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.453][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:57.454][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:57.455][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.457][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.458][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:57.459][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:57.460][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.461][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.463][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:57.464][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:57.465][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.466][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.468][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:57.469][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:57.470][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.471][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.473][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:57.474][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:57.475][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.476][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.477][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:57.479][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:57.480][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.481][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.482][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:57.484][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:57.485][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.486][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.487][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:57.489][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:57.490][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.491][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.492][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:57.494][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:57.495][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.496][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.497][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:57.499][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:57.500][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.501][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.502][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:57.504][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:57.505][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.506][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.507][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:57.509][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:57.510][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.511][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.512][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:57.514][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:57.515][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.516][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.517][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-07-13 16:04:57.519][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:57.520][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:57.521][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.522][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.524][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:57.525][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:57.526][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.527][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.529][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:57.530][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:57.531][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.532][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.534][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:57.535][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:57.536][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.537][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.539][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:57.540][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:57.541][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.542][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.544][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:57.545][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:57.546][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.547][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.549][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:57.550][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:57.551][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.553][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.554][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:57.555][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:57.556][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.558][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.559][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:57.560][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:57.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.563][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.564][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:57.565][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:57.567][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.568][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.569][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:57.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:57.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.573][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.574][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:57.575][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:57.576][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.578][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.579][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:57.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:57.582][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.584][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:57.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:57.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.589][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:57.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:57.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.594][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:57.596][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:57.597][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.598][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.599][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:57.601][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:57.602][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.603][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.604][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:57.606][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:57.607][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.608][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.610][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:57.611][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:57.612][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.613][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.614][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:57.616][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:57.617][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.618][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.619][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:57.621][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:57.622][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.623][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.625][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:57.626][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:57.627][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.628][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.630][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:57.631][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:57.632][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.633][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.635][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:57.636][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:57.637][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.638][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.640][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:57.641][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:57.642][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.643][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.645][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:57.646][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:57.647][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.648][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.650][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:57.651][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:57.652][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.653][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.655][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:57.656][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:57.657][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.659][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.660][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:57.661][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:57.662][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.664][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.665][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:57.666][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:57.667][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.668][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.670][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:57.671][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:57.672][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.674][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.675][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:57.676][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:57.677][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.679][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.680][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:57.681][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:57.682][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.684][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.685][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:57.686][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:57.688][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.689][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.690][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:57.691][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:57.692][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.694][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.695][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:57.696][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:57.697][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.699][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.700][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:57.701][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:57.703][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.704][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.705][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:57.706][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:57.708][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.709][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.710][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:57.711][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:57.713][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.714][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.716][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:57.717][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:57.718][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.719][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.721][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:57.722][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:57.723][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.724][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.726][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:57.727][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:57.728][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.730][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.731][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:57.732][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:57.734][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.735][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.736][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:57.738][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:57.739][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.740][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.741][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:57.743][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:57.744][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.745][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.747][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:57.748][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:57.749][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.750][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.752][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:57.753][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:57.754][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.755][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.757][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:57.758][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:57.759][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.760][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.773][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171699478, 1-[(3S)-3,4-dihydroxy-5-methylene-tetrahydrofuran-2-yl]pyrimidine-2,4-dione, 1-[(3S)-3,4-dihydroxy-5-methylene-2-oxolanyl]pyrimidine-2,4-dione, 1-[(3S)-3,4-dihydroxy-5-methylideneoxolan-2-yl]pyrimidine-2,4-dione, 1-[(3S)-5-methylidene-3,4-bis(oxidanyl)oxolan-2-yl]pyrimidine-2,4-dione, ...].
biodb.DEBUG[2024-07-13 16:04:57.775][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:57.776][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:57.777][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:57.783][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:57.785][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:57.786][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:57.787][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:57.788][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:57.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:57.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.793][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:57.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:57.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.797][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.798][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:57.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:57.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.802][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.803][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:57.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:57.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.814][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.816][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:57.817][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:57.819][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.820][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.822][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:57.823][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:57.824][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.826][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.827][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:57.828][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:57.829][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.831][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.832][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:57.833][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:57.834][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.836][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.837][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:57.838][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:57.840][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.841][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.842][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:57.843][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:57.845][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.846][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.847][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:57.848][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:57.850][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.851][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.852][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:57.853][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:57.855][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.856][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.857][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:57.858][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:57.860][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.861][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.862][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:57.863][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:57.865][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.866][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.867][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:57.869][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:57.870][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.871][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.872][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:57.874][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:57.875][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.876][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.877][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:57.879][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:57.880][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.881][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.882][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:57.884][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:57.885][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.886][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.887][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:57.889][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:57.890][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.891][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.892][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:57.894][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:57.895][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.896][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.897][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:57.899][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:57.900][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.901][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.902][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:57.904][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:57.905][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.906][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.907][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:57.909][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:57.910][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.911][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.912][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:57.914][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:57.915][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.916][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.917][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:57.919][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:57.920][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.921][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.922][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:57.924][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:57.925][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.926][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.927][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:57.929][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:57.930][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.931][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.932][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:57.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:57.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.936][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.937][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:57.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:57.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.941][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.942][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:57.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:57.945][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.946][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.947][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:57.949][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:57.950][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.951][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.952][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:57.954][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:57.955][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.956][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.958][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:57.959][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:57.960][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.961][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.963][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:57.964][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:57.965][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.966][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.968][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:57.969][private$selectFields]
biodb.TRACE[2024-07-13 16:04:57.970][private$selectFields] Fields is null: FALSE
biodb.TRACE[2024-07-13 16:04:57.971][private$selectFields] Fields.type is null: TRUE
biodb.TRACE[2024-07-13 16:04:57.972][private$selectFields] Fields [17]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:57.974][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:57.975][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:57.976][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.977][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.979][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:57.980][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:57.981][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.982][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.984][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:57.985][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:57.986][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.987][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.989][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:57.990][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:57.991][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.992][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.994][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:57.995][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:57.996][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:57.997][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:57.999][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:58.000][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:58.001][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.002][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.004][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:58.005][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:58.006][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.008][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.009][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:58.010][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:58.012][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.013][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.014][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:58.016][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:58.017][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.018][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.019][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:58.021][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:58.022][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.023][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.024][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:58.026][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:58.027][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.028][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.030][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:58.031][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:58.032][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.033][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.035][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:58.036][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:58.037][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.039][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.040][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:58.041][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:58.042][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.044][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.045][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:58.046][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:58.048][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.049][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.050][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:58.052][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:58.053][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.054][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.055][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:58.057][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:58.058][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.059][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.060][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:58.062][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:58.063][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.064][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.065][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:58.066][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:58.068][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.069][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.070][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:58.071][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:58.073][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.074][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.075][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:58.077][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:58.078][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.079][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.080][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:58.082][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:58.083][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.084][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.085][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:58.087][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:58.088][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.089][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.090][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:58.092][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:58.093][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.094][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.095][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:58.096][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:58.098][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.099][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.100][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:58.101][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:58.102][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.104][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.105][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:58.106][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:58.107][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.108][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.110][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:58.111][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:58.112][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.113][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.115][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:58.116][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:58.117][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.118][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.119][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:58.121][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:58.122][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.123][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.124][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:58.126][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:58.127][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.128][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.129][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:58.131][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:58.132][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.133][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.134][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:58.136][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:58.137][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.138][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.139][ef$get] Asked field names are: peak.attr.
biodb.TRACE[2024-07-13 16:04:58.141][ef$get] Realnames of fields are: peak.attr.
biodb.TRACE[2024-07-13 16:04:58.142][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.143][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.144][private$selectFields] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:58.145][private$organizeFieldsByGroups] Fields [16]: "accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, comp.iupac.name.trad, formula, inchi, inchikey, logp, ..."
biodb.TRACE[2024-07-13 16:04:58.147][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:58.148][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:58.149][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.150][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.151][ef$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:58.153][ef$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:58.154][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.155][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.156][ef$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:58.158][ef$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:58.159][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.160][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.161][ef$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:58.162][ef$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:58.164][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.165][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.166][ef$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:58.167][ef$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:58.168][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.170][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.171][ef$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:58.172][ef$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:58.173][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.174][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.176][ef$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:58.177][ef$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:58.178][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.179][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.181][ef$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:58.182][ef$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:58.183][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.184][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.185][ef$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:58.187][ef$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:58.188][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.189][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.190][ef$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:58.191][ef$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:58.193][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.194][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.195][ef$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:58.196][ef$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:58.198][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.199][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.200][ef$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:58.201][ef$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:58.202][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.203][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.205][ef$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:58.206][ef$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:58.207][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.208][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.210][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:58.211][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:58.212][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.213][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.214][ef$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:58.216][ef$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:58.217][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.218][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.226][ef$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:58.227][ef$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:58.229][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.230][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.231][private$organizeFieldsByGroups] Groups [2]: "c("accession", "comp.iupac.name.allowed", "comp.iupac.name.cas", "comp.iupac.name.pref", "comp.iupac.name.syst", "comp.iupac.name.trad", "formula", "inchi", "inchikey", "logp", "molecular.mass", "monoisotopic.mass", "name", "ncbi.pubchem.comp.id", "smiles.canonical", "smiles.isomeric"), list()"
biodb.TRACE[2024-07-13 16:04:58.233][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:58.234][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:58.236][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.237][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.238][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:58.239][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:58.241][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.242][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.243][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:58.244][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:58.245][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.247][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.248][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:58.249][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:58.251][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.252][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.253][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:58.254][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:58.256][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.257][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.258][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:58.259][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.allowed.
biodb.TRACE[2024-07-13 16:04:58.261][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.262][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.263][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:58.265][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:58.266][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.267][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.269][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:58.270][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:58.271][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.272][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.274][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:58.275][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.cas.
biodb.TRACE[2024-07-13 16:04:58.276][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.277][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.279][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:58.280][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:58.281][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.283][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.284][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:58.285][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:58.287][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.288][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.289][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:58.290][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.pref.
biodb.TRACE[2024-07-13 16:04:58.292][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.293][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.294][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:58.296][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:58.297][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.298][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.299][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:58.301][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:58.302][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.303][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.304][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:58.306][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.syst.
biodb.TRACE[2024-07-13 16:04:58.307][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.308][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.310][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:58.311][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:58.312][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.313][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.315][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:58.316][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:58.317][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.318][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.320][self$getBiodb()$getEntryFields()$get] Asked field names are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:58.321][self$getBiodb()$getEntryFields()$get] Realnames of fields are: comp.iupac.name.trad.
biodb.TRACE[2024-07-13 16:04:58.322][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.323][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.325][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:58.326][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:58.327][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.329][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.330][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:58.331][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:58.332][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.334][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.335][self$getBiodb()$getEntryFields()$get] Asked field names are: formula.
biodb.TRACE[2024-07-13 16:04:58.336][self$getBiodb()$getEntryFields()$get] Realnames of fields are: formula.
biodb.TRACE[2024-07-13 16:04:58.337][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.339][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.340][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:58.341][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:58.343][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.344][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.345][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:58.346][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:58.348][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.349][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.350][self$getBiodb()$getEntryFields()$get] Asked field names are: inchi.
biodb.TRACE[2024-07-13 16:04:58.351][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchi.
biodb.TRACE[2024-07-13 16:04:58.353][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.354][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.355][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:58.357][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:58.358][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.359][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.360][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:58.362][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:58.363][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.364][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.365][self$getBiodb()$getEntryFields()$get] Asked field names are: inchikey.
biodb.TRACE[2024-07-13 16:04:58.367][self$getBiodb()$getEntryFields()$get] Realnames of fields are: inchikey.
biodb.TRACE[2024-07-13 16:04:58.368][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.369][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.371][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:58.372][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:58.373][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.374][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.376][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:58.377][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:58.378][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.379][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.381][self$getBiodb()$getEntryFields()$get] Asked field names are: logp.
biodb.TRACE[2024-07-13 16:04:58.382][self$getBiodb()$getEntryFields()$get] Realnames of fields are: logp.
biodb.TRACE[2024-07-13 16:04:58.383][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.384][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.386][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:58.387][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:58.388][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.390][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.391][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:58.392][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:58.393][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.395][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.396][self$getBiodb()$getEntryFields()$get] Asked field names are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:58.397][self$getBiodb()$getEntryFields()$get] Realnames of fields are: molecular.mass.
biodb.TRACE[2024-07-13 16:04:58.398][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.400][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.401][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:58.402][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:58.404][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.405][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.406][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:58.407][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:58.409][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.410][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.411][self$getBiodb()$getEntryFields()$get] Asked field names are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:58.413][self$getBiodb()$getEntryFields()$get] Realnames of fields are: monoisotopic.mass.
biodb.TRACE[2024-07-13 16:04:58.414][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.415][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.416][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:58.418][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:58.419][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.420][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.421][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:58.423][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:58.424][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.425][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.426][self$getBiodb()$getEntryFields()$get] Asked field names are: name.
biodb.TRACE[2024-07-13 16:04:58.428][self$getBiodb()$getEntryFields()$get] Realnames of fields are: name.
biodb.TRACE[2024-07-13 16:04:58.429][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.430][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.432][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:58.433][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:58.434][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.435][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.437][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:58.438][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:58.439][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.440][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.442][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:58.443][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:58.444][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.445][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.447][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:58.448][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:58.450][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.451][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.452][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:58.453][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:58.455][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.456][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.457][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:58.458][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.canonical.
biodb.TRACE[2024-07-13 16:04:58.460][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.461][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.462][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:58.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:58.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.466][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.467][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:58.469][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:58.470][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.471][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.472][self$getBiodb()$getEntryFields()$get] Asked field names are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:58.474][self$getBiodb()$getEntryFields()$get] Realnames of fields are: smiles.isomeric.
biodb.TRACE[2024-07-13 16:04:58.475][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.476][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.489][private$entriesToListOfDataframes] Entry converted to data frame: [1, 16]: [accession, comp.iupac.name.allowed, comp.iupac.name.cas, comp.iupac.name.pref, comp.iupac.name.syst, ...] [171651179, 1-fluoro-N-[(3R,4S)-4-fluoropyrrolidin-3-yl]cyclopropanesulfonamide, 1-fluoro-N-[(3R,4S)-4-fluoro-3-pyrrolidinyl]-1-cyclopropanesulfonamide, 1-fluoro-N-[(3R,4S)-4-fluoropyrrolidin-3-yl]cyclopropane-1-sulfonamide, 1-fluoranyl-N-[(3R,4S)-4-fluoranylpyrrolidin-3-yl]cyclopropane-1-sulfonamide, ...].
biodb.DEBUG[2024-07-13 16:04:58.490][private$entriesToListOfDataframes] Converted 3 entry/ies to data frame(s).
biodb.DEBUG[2024-07-13 16:04:58.492][private$bdb$entriesToDataframe] Merging data frames with a singleentry each into a single data frame with all entries.
biodb.TRACE[2024-07-13 16:04:58.500][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-07-13 16:04:58.502][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-07-13 16:04:58.503][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.504][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:58.505][self$getBiodb()$getEntryFields()$get] Asked field names are: nominal.mass.
biodb.TRACE[2024-07-13 16:04:58.507][self$getBiodb()$getEntryFields()$get] Realnames of fields are: nominal.mass.
biodb.TRACE[2024-07-13 16:04:58.508][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:58.509][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-13 16:04:58.514][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-13 16:04:58.516][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.comp from the request scheduler
biodb.INFO [2024-07-13 16:04:58.517][self$deleteConn] Connector "ncbi.pubchem.comp" deleted.
biodb.DEBUG[2024-07-13 16:04:58.518][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-13 16:04:58.519][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:58.520][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:58.521][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:58.522][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:58.524][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.525][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.INFO [2024-07-13 16:04:58.529][biodb::testContext]
biodb.INFO [2024-07-13 16:04:58.530][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-13 16:04:58.531][biodb::testContext] Test context - Pubchem Subst long tests
biodb.INFO [2024-07-13 16:04:58.533][biodb::testContext] ********************************************************************************
biodb.INFO [2024-07-13 16:04:58.534][biodb::testContext]
biodb.INFO [2024-07-13 16:04:58.536][private$loadBiodbPkgsDefinitions] Loading definitions from package biodb version 1.12.0.
biodb.DEBUG[2024-07-13 16:04:58.538][self$loadDefinitions] Load definitions from file "/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library/biodb/definitions.yml".
biodb.DEBUG[2024-07-13 16:04:58.543][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-13 16:04:58.544][self$getConfig()$define] Define config key allow.huge.downloads.
biodb.DEBUG[2024-07-13 16:04:58.545][self$set] Set key allow.huge.downloads to TRUE.
biodb.DEBUG[2024-07-13 16:04:58.546][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:58.547][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.549][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:58.550][self$getConfig()$define] Define config key autoload.extra.pkgs.
biodb.DEBUG[2024-07-13 16:04:58.551][self$set] Set key autoload.extra.pkgs to TRUE.
biodb.DEBUG[2024-07-13 16:04:58.552][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:58.553][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.554][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:58.556][self$getConfig()$define] Define config key cache.all.requests.
biodb.DEBUG[2024-07-13 16:04:58.557][self$set] Set key cache.all.requests to TRUE.
biodb.DEBUG[2024-07-13 16:04:58.558][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:58.559][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.560][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:58.562][self$getConfig()$define] Define config key cache.directory.
biodb.DEBUG[2024-07-13 16:04:58.563][self$getConfig()$define] Define config key cache.read.only.
biodb.DEBUG[2024-07-13 16:04:58.564][self$set] Set key cache.read.only to FALSE.
biodb.DEBUG[2024-07-13 16:04:58.565][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:58.566][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.567][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:58.569][self$getConfig()$define] Define config key cache.subfolders.
biodb.DEBUG[2024-07-13 16:04:58.570][self$getConfig()$define] Define config key cache.system.
biodb.DEBUG[2024-07-13 16:04:58.571][self$set] Set key cache.system to TRUE.
biodb.DEBUG[2024-07-13 16:04:58.572][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:58.573][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.575][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:58.576][self$getConfig()$define] Define config key use.cache.for.local.db.
biodb.DEBUG[2024-07-13 16:04:58.577][self$set] Set key use.cache.for.local.db to FALSE.
biodb.DEBUG[2024-07-13 16:04:58.578][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:58.579][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.580][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:58.582][self$getConfig()$define] Define config key dwnld.chunk.size.
biodb.DEBUG[2024-07-13 16:04:58.583][self$getConfig()$define] Define config key dwnld.timeout.
biodb.DEBUG[2024-07-13 16:04:58.584][self$set] Set key dwnld.timeout to 3600.
biodb.DEBUG[2024-07-13 16:04:58.585][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:58.586][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.588][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:58.589][self$getConfig()$define] Define config key compute.fields.
biodb.DEBUG[2024-07-13 16:04:58.590][self$set] Set key compute.fields to TRUE.
biodb.DEBUG[2024-07-13 16:04:58.591][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:58.592][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.593][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:58.595][self$getConfig()$define] Define config key factory.cache.
biodb.DEBUG[2024-07-13 16:04:58.596][self$getConfig()$define] Define config key force.locale.
biodb.DEBUG[2024-07-13 16:04:58.597][self$set] Set key force.locale to TRUE.
biodb.DEBUG[2024-07-13 16:04:58.598][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:58.599][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.600][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:58.602][self$getConfig()$define] Define config key longterm.cache.subfolder.
biodb.DEBUG[2024-07-13 16:04:58.603][self$getConfig()$define] Define config key msg.caution.lvl.
biodb.DEBUG[2024-07-13 16:04:58.604][self$getConfig()$define] Define config key msg.debug.lvl.
biodb.DEBUG[2024-07-13 16:04:58.605][self$getConfig()$define] Define config key msg.info.lvl.
biodb.DEBUG[2024-07-13 16:04:58.607][self$getConfig()$define] Define config key multival.field.sep.
biodb.DEBUG[2024-07-13 16:04:58.608][self$set] Set key multival.field.sep to ";".
biodb.DEBUG[2024-07-13 16:04:58.609][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:58.610][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.611][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:58.613][self$getConfig()$define] Define config key intra.field.name.sep.
biodb.DEBUG[2024-07-13 16:04:58.614][self$set] Set key intra.field.name.sep to ".".
biodb.DEBUG[2024-07-13 16:04:58.615][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:58.616][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.617][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:58.618][self$getConfig()$define] Define config key entries.sep.
biodb.DEBUG[2024-07-13 16:04:58.620][self$set] Set key entries.sep to "|".
biodb.DEBUG[2024-07-13 16:04:58.621][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:58.622][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.623][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:58.624][self$getConfig()$define] Define config key offline.
biodb.DEBUG[2024-07-13 16:04:58.626][self$set] Set key offline to FALSE.
biodb.DEBUG[2024-07-13 16:04:58.627][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:58.628][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.629][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:58.630][self$getConfig()$define] Define config key persistent.cache.impl.
biodb.DEBUG[2024-07-13 16:04:58.631][self$set] Set key persistent.cache.impl to "custom".
biodb.DEBUG[2024-07-13 16:04:58.640][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:58.641][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.643][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:58.644][self$getConfig()$define] Define config key proton.mass.
biodb.DEBUG[2024-07-13 16:04:58.646][self$set] Set key proton.mass to 1.0072765.
biodb.DEBUG[2024-07-13 16:04:58.647][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:58.648][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.649][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:58.651][self$getConfig()$define] Define config key shortterm.cache.subfolder.
biodb.DEBUG[2024-07-13 16:04:58.652][self$getConfig()$define] Define config key svn.binary.path.
biodb.DEBUG[2024-07-13 16:04:58.662][self$set] Set key svn.binary.path to "".
biodb.DEBUG[2024-07-13 16:04:58.663][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:58.665][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.666][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:58.667][self$getConfig()$define] Define config key test.functions.
biodb.DEBUG[2024-07-13 16:04:58.668][self$getConfig()$define] Define config key useragent.
biodb.DEBUG[2024-07-13 16:04:58.670][self$set] Set key useragent to "R Bioconductor biodb library.".
biodb.DEBUG[2024-07-13 16:04:58.671][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:58.672][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.673][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:58.674][self$getDbsInfo()$define] Define connector comp.csv.file.
biodb.DEBUG[2024-07-13 16:04:58.677][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-13 16:04:58.678][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields.".
biodb.DEBUG[2024-07-13 16:04:58.679][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:58.681][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-13 16:04:58.682][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:58.683][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-13 16:04:58.684][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-13 16:04:58.686][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-13 16:04:58.687][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-13 16:04:58.688][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-13 16:04:58.690][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:58.691][self$setPropertyValue] Setting property "name" to "Compound CSV File".
biodb.DEBUG[2024-07-13 16:04:58.692][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-13 16:04:58.693][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:58.695][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:58.696][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-13 16:04:58.696][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-13 16:04:58.696][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-13 16:04:58.696][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-13 16:04:58.696][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-13 16:04:58.697][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-13 16:04:58.699][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:04:58.700][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:04:58.701][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-13 16:04:58.702][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:04:58.703][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:04:58.705][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-13 16:04:58.706][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:58.707][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-13 16:04:58.708][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-13 16:04:58.709][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-13 16:04:58.711][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:58.712][self$getDbsInfo()$define] Define connector comp.sqlite.
biodb.DEBUG[2024-07-13 16:04:58.714][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-13 16:04:58.716][self$setPropertyValue] Setting property "description" to "A connector to handle a compound database stored inside an SQLite file.".
biodb.DEBUG[2024-07-13 16:04:58.717][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:58.719][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-13 16:04:58.720][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:58.721][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-13 16:04:58.723][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-13 16:04:58.724][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-13 16:04:58.725][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-13 16:04:58.727][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-13 16:04:58.728][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:58.729][self$setPropertyValue] Setting property "name" to "Compound SQLite".
biodb.DEBUG[2024-07-13 16:04:58.731][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-13 16:04:58.732][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:58.733][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:58.734][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-13 16:04:58.734][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-13 16:04:58.734][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-13 16:04:58.734][self$setPropertyValue] Setting property "searchable.fields" to "average.mass".
biodb.DEBUG[2024-07-13 16:04:58.734][self$setPropertyValue] Setting property "searchable.fields" to "nominal.mass".
biodb.DEBUG[2024-07-13 16:04:58.736][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-13 16:04:58.737][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:04:58.738][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:04:58.740][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-13 16:04:58.741][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:04:58.742][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:04:58.743][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-13 16:04:58.745][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:58.746][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-13 16:04:58.747][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-13 16:04:58.748][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-13 16:04:58.750][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:58.751][self$getDbsInfo()$define] Define connector mass.csv.file.
biodb.DEBUG[2024-07-13 16:04:58.753][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:58.755][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside a CSV file. It is possible to choose the separator for the CSV file, as well as match the column names with the biodb entry fields..".
biodb.DEBUG[2024-07-13 16:04:58.756][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:58.757][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-13 16:04:58.758][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:58.760][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-13 16:04:58.761][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-13 16:04:58.762][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-13 16:04:58.763][self$setPropertyValue] Setting property "entry.content.type" to "tsv".
biodb.DEBUG[2024-07-13 16:04:58.765][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-13 16:04:58.766][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-13 16:04:58.767][self$setPropertyValue] Setting property "name" to "Mass spectra CSV File".
biodb.DEBUG[2024-07-13 16:04:58.768][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-13 16:04:58.770][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:58.771][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:58.772][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:58.773][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-13 16:04:58.775][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:04:58.776][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:04:58.777][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-13 16:04:58.778][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:04:58.779][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:04:58.780][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-13 16:04:58.782][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:58.783][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-13 16:04:58.784][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-13 16:04:58.785][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-13 16:04:58.787][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:58.788][self$getDbsInfo()$define] Define connector mass.sqlite.
biodb.DEBUG[2024-07-13 16:04:58.790][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:58.791][self$setPropertyValue] Setting property "description" to "A connector to handle a mass spectra database stored inside an SQLite file.".
biodb.DEBUG[2024-07-13 16:04:58.793][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:58.794][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-13 16:04:58.795][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:58.796][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-13 16:04:58.798][self$setPropertyValue] Setting property "editable" to "TRUE".
biodb.DEBUG[2024-07-13 16:04:58.799][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-13 16:04:58.800][self$setPropertyValue] Setting property "entry.content.type" to "list".
biodb.DEBUG[2024-07-13 16:04:58.801][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-13 16:04:58.803][self$setPropertyValue] Setting property "mass.db" to "TRUE".
biodb.DEBUG[2024-07-13 16:04:58.804][self$setPropertyValue] Setting property "name" to "Mass spectra SQLite".
biodb.DEBUG[2024-07-13 16:04:58.805][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-13 16:04:58.806][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:58.808][self$setPropertyValue] Setting property "remote" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:58.809][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:58.810][self$setPropertyValue] Setting property "scheduler.n" to "1".
biodb.DEBUG[2024-07-13 16:04:58.811][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:04:58.812][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:04:58.814][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-13 16:04:58.815][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:04:58.816][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:04:58.817][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-13 16:04:58.818][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:58.819][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-13 16:04:58.821][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-13 16:04:58.822][self$setPropertyValue] Setting property "writable" to "TRUE".
biodb.DEBUG[2024-07-13 16:04:58.823][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:58.825][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-13 16:04:58.826][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.827][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:58.828][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:58.829][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:58.830][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:58.831][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.832][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:58.834][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:58.835][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:58.836][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:58.837][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.838][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:58.839][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:58.840][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:58.841][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:58.842][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.843][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:58.845][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:58.846][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:58.847][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:58.848][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.849][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:58.850][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:58.851][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:58.852][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:58.853][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.854][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:58.855][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:58.857][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:58.858][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:58.859][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.860][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:58.861][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:58.862][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:58.863][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:58.864][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.865][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:58.866][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:58.867][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:58.869][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:58.870][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.871][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:58.872][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:58.873][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:58.874][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:58.875][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.876][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:58.877][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:58.878][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:58.879][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:58.880][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.882][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:58.883][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:58.884][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:58.885][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:58.886][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.887][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:58.888][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:58.889][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:58.890][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:58.891][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.893][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:58.894][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:58.895][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:58.896][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:58.897][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.898][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:58.899][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:58.900][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:58.901][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:58.902][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.904][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:58.905][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:58.906][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:58.907][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:58.908][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.909][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:58.910][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:58.911][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:58.913][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:58.914][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.915][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:58.916][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:58.917][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:58.918][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:58.919][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:58.920][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:58.922][self$getEntryFields()$define] Define field accession.
biodb.DEBUG[2024-07-13 16:04:58.923][self$getEntryFields()$define] Define field description.
biodb.DEBUG[2024-07-13 16:04:58.925][self$getEntryFields()$define] Define field name.
biodb.DEBUG[2024-07-13 16:04:58.927][self$getEntryFields()$define] Define field cas.id.
biodb.DEBUG[2024-07-13 16:04:58.929][self$getEntryFields()$define] Define field chebi.id.
biodb.DEBUG[2024-07-13 16:04:58.930][self$getEntryFields()$define] Define field chemspider.id.
biodb.DEBUG[2024-07-13 16:04:58.932][self$getEntryFields()$define] Define field comp.csv.file.id.
biodb.DEBUG[2024-07-13 16:04:58.934][self$getEntryFields()$define] Define field comp.sqlite.id.
biodb.DEBUG[2024-07-13 16:04:58.935][self$getEntryFields()$define] Define field expasy.enzyme.id.
biodb.DEBUG[2024-07-13 16:04:58.937][self$getEntryFields()$define] Define field hmdb.metabolites.id.
biodb.DEBUG[2024-07-13 16:04:58.939][self$getEntryFields()$define] Define field kegg.compound.id.
biodb.DEBUG[2024-07-13 16:04:58.941][self$getEntryFields()$define] Define field kegg.genes.id.
biodb.DEBUG[2024-07-13 16:04:58.942][self$getEntryFields()$define] Define field mass.csv.file.id.
biodb.DEBUG[2024-07-13 16:04:58.944][self$getEntryFields()$define] Define field mass.sqlite.id.
biodb.DEBUG[2024-07-13 16:04:58.946][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-13 16:04:58.948][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-13 16:04:58.949][self$getEntryFields()$define] Define field compound.id.
biodb.DEBUG[2024-07-13 16:04:58.951][self$getEntryFields()$define] Define field average.mass.
biodb.DEBUG[2024-07-13 16:04:58.953][self$getEntryFields()$define] Define field molecular.mass.
biodb.DEBUG[2024-07-13 16:04:58.954][self$getEntryFields()$define] Define field monoisotopic.mass.
biodb.DEBUG[2024-07-13 16:04:58.956][self$getEntryFields()$define] Define field nominal.mass.
biodb.DEBUG[2024-07-13 16:04:58.958][self$getEntryFields()$define] Define field peak.attr.
biodb.DEBUG[2024-07-13 16:04:58.960][self$getEntryFields()$define] Define field peak.comp.
biodb.DEBUG[2024-07-13 16:04:58.961][self$getEntryFields()$define] Define field peak.error.ppm.
biodb.DEBUG[2024-07-13 16:04:58.963][self$getEntryFields()$define] Define field peak.formula.
biodb.DEBUG[2024-07-13 16:04:58.965][self$getEntryFields()$define] Define field peak.intensity.
biodb.DEBUG[2024-07-13 16:04:58.967][self$getEntryFields()$define] Define field peak.mass.
biodb.DEBUG[2024-07-13 16:04:58.968][self$getEntryFields()$define] Define field peak.mztheo.
biodb.DEBUG[2024-07-13 16:04:58.970][self$getEntryFields()$define] Define field peak.mzexp.
biodb.DEBUG[2024-07-13 16:04:58.972][self$getEntryFields()$define] Define field peak.mz.
biodb.DEBUG[2024-07-13 16:04:58.974][self$getEntryFields()$define] Define field peak.relative.intensity.
biodb.DEBUG[2024-07-13 16:04:58.975][self$getEntryFields()$define] Define field peaks.
biodb.DEBUG[2024-07-13 16:04:58.977][self$getEntryFields()$define] Define field chrom.col.constructor.
biodb.DEBUG[2024-07-13 16:04:58.979][self$getEntryFields()$define] Define field chrom.col.diameter.
biodb.DEBUG[2024-07-13 16:04:58.980][self$getEntryFields()$define] Define field chrom.col.id.
biodb.DEBUG[2024-07-13 16:04:58.982][self$getEntryFields()$define] Define field chrom.col.length.
biodb.DEBUG[2024-07-13 16:04:58.984][self$getEntryFields()$define] Define field chrom.col.method.protocol.
biodb.DEBUG[2024-07-13 16:04:58.986][self$getEntryFields()$define] Define field chrom.col.name.
biodb.DEBUG[2024-07-13 16:04:58.987][self$getEntryFields()$define] Define field chrom.flow.gradient.
biodb.DEBUG[2024-07-13 16:04:58.989][self$getEntryFields()$define] Define field chrom.flow.rate.
biodb.DEBUG[2024-07-13 16:04:58.991][self$getEntryFields()$define] Define field chrom.rt.
biodb.DEBUG[2024-07-13 16:04:58.993][self$getEntryFields()$define] Define field chrom.rt.max.
biodb.DEBUG[2024-07-13 16:04:58.994][self$getEntryFields()$define] Define field chrom.rt.min.
biodb.DEBUG[2024-07-13 16:04:58.996][self$getEntryFields()$define] Define field chrom.rt.unit.
biodb.DEBUG[2024-07-13 16:04:58.998][self$getEntryFields()$define] Define field chrom.solvent.
biodb.DEBUG[2024-07-13 16:04:58.999][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-13 16:04:59.001][self$getEntryFields()$define] Define field aa.seq.length.
biodb.DEBUG[2024-07-13 16:04:59.003][self$getEntryFields()$define] Define field aa.seq.location.
biodb.DEBUG[2024-07-13 16:04:59.005][self$getEntryFields()$define] Define field nt.seq.
biodb.DEBUG[2024-07-13 16:04:59.007][self$getEntryFields()$define] Define field nt.seq.length.
biodb.DEBUG[2024-07-13 16:04:59.008][self$getEntryFields()$define] Define field ec.
biodb.DEBUG[2024-07-13 16:04:59.010][self$getEntryFields()$define] Define field organism.
biodb.DEBUG[2024-07-13 16:04:59.012][self$getEntryFields()$define] Define field pathway.class.
biodb.DEBUG[2024-07-13 16:04:59.014][self$getEntryFields()$define] Define field catalytic.activity.
biodb.DEBUG[2024-07-13 16:04:59.015][self$getEntryFields()$define] Define field cofactor.
biodb.DEBUG[2024-07-13 16:04:59.017][self$getEntryFields()$define] Define field gene.symbol.
biodb.DEBUG[2024-07-13 16:04:59.019][self$getEntryFields()$define] Define field charge.
biodb.DEBUG[2024-07-13 16:04:59.021][self$getEntryFields()$define] Define field comp.iupac.name.allowed.
biodb.DEBUG[2024-07-13 16:04:59.022][self$getEntryFields()$define] Define field comp.iupac.name.cas.
biodb.DEBUG[2024-07-13 16:04:59.024][self$getEntryFields()$define] Define field comp.iupac.name.pref.
biodb.DEBUG[2024-07-13 16:04:59.026][self$getEntryFields()$define] Define field comp.iupac.name.syst.
biodb.DEBUG[2024-07-13 16:04:59.028][self$getEntryFields()$define] Define field comp.iupac.name.trad.
biodb.DEBUG[2024-07-13 16:04:59.029][self$getEntryFields()$define] Define field comp.super.class.
biodb.DEBUG[2024-07-13 16:04:59.031][self$getEntryFields()$define] Define field equation.
biodb.DEBUG[2024-07-13 16:04:59.033][self$getEntryFields()$define] Define field formula.
biodb.DEBUG[2024-07-13 16:04:59.034][self$getEntryFields()$define] Define field composition.
biodb.DEBUG[2024-07-13 16:04:59.036][self$getEntryFields()$define] Define field inchi.
biodb.DEBUG[2024-07-13 16:04:59.038][self$getEntryFields()$define] Define field inchikey.
biodb.DEBUG[2024-07-13 16:04:59.040][self$getEntryFields()$define] Define field logp.
biodb.DEBUG[2024-07-13 16:04:59.041][self$getEntryFields()$define] Define field ms.level.
biodb.DEBUG[2024-07-13 16:04:59.051][self$getEntryFields()$define] Define field ms.mode.
biodb.DEBUG[2024-07-13 16:04:59.053][self$getEntryFields()$define] Define field msdev.
biodb.DEBUG[2024-07-13 16:04:59.055][self$getEntryFields()$define] Define field msdevtype.
biodb.DEBUG[2024-07-13 16:04:59.057][self$getEntryFields()$define] Define field msprecannot.
biodb.DEBUG[2024-07-13 16:04:59.059][self$getEntryFields()$define] Define field msprecmz.
biodb.DEBUG[2024-07-13 16:04:59.061][self$getEntryFields()$define] Define field mstype.
biodb.DEBUG[2024-07-13 16:04:59.062][self$getEntryFields()$define] Define field nb.compounds.
biodb.DEBUG[2024-07-13 16:04:59.064][self$getEntryFields()$define] Define field nb.peaks.
biodb.DEBUG[2024-07-13 16:04:59.066][self$getEntryFields()$define] Define field products.
biodb.DEBUG[2024-07-13 16:04:59.067][self$getEntryFields()$define] Define field smiles.
biodb.DEBUG[2024-07-13 16:04:59.069][self$getEntryFields()$define] Define field smiles.canonical.
biodb.DEBUG[2024-07-13 16:04:59.071][self$getEntryFields()$define] Define field smiles.isomeric.
biodb.DEBUG[2024-07-13 16:04:59.073][self$getEntryFields()$define] Define field substrates.
biodb.DEBUG[2024-07-13 16:04:59.074][initialize] Created successfully new BiodbMain instance.
biodb.DEBUG[2024-07-13 16:04:59.076][initialize] This is biodb version 1.12.0.
biodb.DEBUG[2024-07-13 16:04:59.078][notifyObservers] Notify observers for notifyNewObservers.
biodb.DEBUG[2024-07-13 16:04:59.079][FUN] Trying to call function notifyNewObservers on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:59.080][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:59.081][FUN] Trying to call function notifyNewObservers on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:59.082][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:59.083][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:59.084][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:59.085][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:59.087][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:59.088][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:59.089][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:59.090][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:59.091][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:59.092][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:59.093][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:59.094][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:59.095][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:59.097][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:59.098][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:59.099][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:59.100][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:59.101][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:59.102][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:59.103][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:59.104][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:59.106][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:59.107][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:59.108][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:59.109][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:59.110][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:59.111][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:59.112][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:59.113][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:59.114][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:59.116][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:59.117][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:59.118][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:59.119][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:59.120][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:59.121][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:59.122][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:59.123][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:59.124][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:59.126][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:59.127][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:59.128][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:59.129][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:59.130][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:59.131][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:59.132][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:59.133][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:59.134][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:59.136][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:59.137][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:59.138][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:59.139][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:59.140][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:59.141][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:59.142][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:59.143][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:59.144][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:59.146][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:59.147][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:59.148][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:59.149][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:59.150][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:59.151][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:59.152][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:59.153][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:59.154][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:59.156][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:59.157][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:59.158][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:59.159][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:59.160][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:59.161][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:59.162][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:59.163][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:59.164][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:59.165][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:59.167][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:59.168][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:59.169][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:59.170][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:59.171][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:59.172][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:59.173][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:59.174][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:59.175][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:59.177][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:59.178][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:59.179][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:59.180][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:59.181][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:59.182][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:59.183][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:59.184][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:59.185][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:59.187][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:59.188][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:59.189][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:59.190][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:59.191][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:59.192][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:59.193][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:59.194][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:59.195][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:59.196][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:59.198][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:59.199][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:59.200][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:59.201][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:59.202][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:59.203][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:59.204][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:59.205][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:59.206][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:59.208][notifyObservers] Notify observers for notifyCfgUpdate.
biodb.DEBUG[2024-07-13 16:04:59.209][FUN] Trying to call function notifyCfgUpdate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:59.210][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:59.211][FUN] Trying to call function notifyCfgUpdate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:59.212][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:59.213][FUN] Trying to call function notifyCfgUpdate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:59.214][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.DEBUG[2024-07-13 16:04:59.217][biodb$loadDefinitions] Load definitions from file "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/definitions.yml".
biodb.DEBUG[2024-07-13 16:04:59.219][self$getDbsInfo()$define] Define connector ncbi.ccds.
biodb.DEBUG[2024-07-13 16:04:59.221][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:59.223][self$setPropertyValue] Setting property "description" to "NCBI CCDS database.".
biodb.DEBUG[2024-07-13 16:04:59.224][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:59.225][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-13 16:04:59.226][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:59.228][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-13 16:04:59.229][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:59.230][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-13 16:04:59.231][self$setPropertyValue] Setting property "entry.content.type" to "html".
biodb.DEBUG[2024-07-13 16:04:59.233][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-13 16:04:59.234][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:59.235][self$setPropertyValue] Setting property "name" to "NCBI CCDS".
biodb.DEBUG[2024-07-13 16:04:59.236][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-13 16:04:59.238][self$setPropertyValue] Setting property "parsing.expr" to "list(attr = "value", path = "//input[@id='DATA']")".
biodb.DEBUG[2024-07-13 16:04:59.238][self$setPropertyValue] Setting property "parsing.expr" to "//b[starts-with(.,'Nucleotide Sequence')]/../tt".
biodb.DEBUG[2024-07-13 16:04:59.239][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-13 16:04:59.240][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:59.241][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-13 16:04:59.243][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:04:59.244][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:04:59.245][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-13 16:04:59.246][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:04:59.247][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:04:59.248][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-13 16:04:59.250][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/CCDS/".
biodb.DEBUG[2024-07-13 16:04:59.250][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils".
biodb.DEBUG[2024-07-13 16:04:59.251][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-13 16:04:59.252][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-13 16:04:59.253][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:59.254][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:59.256][self$getDbsInfo()$define] Define connector ncbi.gene.
biodb.DEBUG[2024-07-13 16:04:59.258][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:59.260][self$setPropertyValue] Setting property "description" to "NCBI Gene database.".
biodb.DEBUG[2024-07-13 16:04:59.261][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:59.262][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-13 16:04:59.263][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:59.265][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-13 16:04:59.266][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:59.267][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-13 16:04:59.268][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-13 16:04:59.270][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-13 16:04:59.271][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:59.272][self$setPropertyValue] Setting property "name" to "NCBI Gene".
biodb.DEBUG[2024-07-13 16:04:59.273][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-13 16:04:59.275][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-track_geneid".
biodb.DEBUG[2024-07-13 16:04:59.275][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_desc".
biodb.DEBUG[2024-07-13 16:04:59.275][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_maploc".
biodb.DEBUG[2024-07-13 16:04:59.275][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_locus".
biodb.DEBUG[2024-07-13 16:04:59.275][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-ref_syn_E".
biodb.DEBUG[2024-07-13 16:04:59.275][self$setPropertyValue] Setting property "parsing.expr" to "//Gene-commentary_heading[text()='UniProtKB']/..//Dbtag_db[text()='UniProtKB/Swiss-Prot']/..//Object-id_str".
biodb.DEBUG[2024-07-13 16:04:59.276][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-13 16:04:59.277][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-13 16:04:59.278][self$setPropertyValue] Setting property "scheduler.n" to "3".
biodb.DEBUG[2024-07-13 16:04:59.280][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:04:59.281][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:04:59.282][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-13 16:04:59.283][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:04:59.284][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:04:59.285][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-13 16:04:59.287][self$setPropertyValue] Setting property "urls" to "https://www.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-07-13 16:04:59.287][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-07-13 16:04:59.288][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-13 16:04:59.289][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-13 16:04:59.290][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:59.291][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:59.293][self$getDbsInfo()$define] Define connector ncbi.pubchem.comp.
biodb.DEBUG[2024-07-13 16:04:59.295][self$setPropertyValue] Setting property "compound.db" to "TRUE".
biodb.DEBUG[2024-07-13 16:04:59.297][self$setPropertyValue] Setting property "description" to "PubChem Compound database.".
biodb.DEBUG[2024-07-13 16:04:59.298][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:59.299][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-13 16:04:59.300][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:59.302][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-13 16:04:59.303][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:59.304][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-13 16:04:59.305][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-13 16:04:59.307][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-13 16:04:59.308][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:59.309][self$setPropertyValue] Setting property "name" to "PubChem Compound".
biodb.DEBUG[2024-07-13 16:04:59.310][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-13 16:04:59.312][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-07-13 16:04:59.312][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Allowed']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:04:59.312][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='CAS-like Style']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:04:59.312][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Preferred']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:04:59.312][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Systematic']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:04:59.312][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='IUPAC Name']/../PC-Urn_name[text()='Traditional']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:04:59.312][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Mass']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:04:59.312][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Formula']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:04:59.312][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChI']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:04:59.312][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='InChIKey']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:04:59.312][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Log P']/../../..//PC-InfoData_value_fval".
biodb.DEBUG[2024-07-13 16:04:59.312][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='Molecular Weight']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:04:59.312][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Canonical']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:04:59.312][self$setPropertyValue] Setting property "parsing.expr" to "//PC-Urn_label[text()='SMILES']/../PC-Urn_name[text()='Isomeric']/../../..//PC-InfoData_value_sval".
biodb.DEBUG[2024-07-13 16:04:59.313][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-13 16:04:59.314][self$setPropertyValue] Setting property "searchable.fields" to "name".
biodb.DEBUG[2024-07-13 16:04:59.314][self$setPropertyValue] Setting property "searchable.fields" to "molecular.mass".
biodb.DEBUG[2024-07-13 16:04:59.314][self$setPropertyValue] Setting property "searchable.fields" to "monoisotopic.mass".
biodb.DEBUG[2024-07-13 16:04:59.316][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-07-13 16:04:59.317][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:04:59.318][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:04:59.319][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-13 16:04:59.320][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:04:59.322][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:04:59.323][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-13 16:04:59.324][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-07-13 16:04:59.324][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-07-13 16:04:59.324][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-07-13 16:04:59.325][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-13 16:04:59.326][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-13 16:04:59.328][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:59.329][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-07-13 16:04:59.330][self$getDbsInfo()$define] Define connector ncbi.pubchem.subst.
biodb.DEBUG[2024-07-13 16:04:59.333][self$setPropertyValue] Setting property "compound.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:59.334][self$setPropertyValue] Setting property "description" to "PubChem Substance database.".
biodb.DEBUG[2024-07-13 16:04:59.335][self$setPropertyValue] Setting property "disabled" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:59.337][self$setPropertyValue] Setting property "disabling.reason" to "".
biodb.DEBUG[2024-07-13 16:04:59.338][self$setPropertyValue] Setting property "downloadable" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:59.339][self$setPropertyValue] Setting property "dwnld.ext" to "NA".
biodb.DEBUG[2024-07-13 16:04:59.340][self$setPropertyValue] Setting property "editable" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:59.341][self$setPropertyValue] Setting property "entry.content.encoding" to "NA".
biodb.DEBUG[2024-07-13 16:04:59.343][self$setPropertyValue] Setting property "entry.content.type" to "xml".
biodb.DEBUG[2024-07-13 16:04:59.344][self$setPropertyValue] Setting property "matching.fields" to "c("peak.mztheo", "peak.mzexp")".
biodb.DEBUG[2024-07-13 16:04:59.345][self$setPropertyValue] Setting property "mass.db" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:59.346][self$setPropertyValue] Setting property "name" to "PubChem Substance".
biodb.DEBUG[2024-07-13 16:04:59.348][self$setPropertyValue] Setting property "package" to "biodb".
biodb.DEBUG[2024-07-13 16:04:59.349][self$setPropertyValue] Setting property "parsing.expr" to "//PC-ID_id".
biodb.DEBUG[2024-07-13 16:04:59.349][self$setPropertyValue] Setting property "parsing.expr" to "//PC-CompoundType_id_cid".
biodb.DEBUG[2024-07-13 16:04:59.350][self$setPropertyValue] Setting property "remote" to "TRUE".
biodb.DEBUG[2024-07-13 16:04:59.351][self$setPropertyValue]
biodb.DEBUG[2024-07-13 16:04:59.353][self$setPropertyValue] Setting property "scheduler.n" to "5".
biodb.DEBUG[2024-07-13 16:04:59.354][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:04:59.355][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:04:59.356][self$setPropertyValue] Setting property "scheduler.t" to "1".
biodb.DEBUG[2024-07-13 16:04:59.357][self$setPropertyValue] Notifying observers about frequency change.
biodb.DEBUG[2024-07-13 16:04:59.359][notifyObservers] Notify observers for notifyConnSchedulerFrequencyUpdated.
biodb.DEBUG[2024-07-13 16:04:59.360][self$setPropertyValue] Setting property "token" to "NA".
biodb.DEBUG[2024-07-13 16:04:59.361][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/".
biodb.DEBUG[2024-07-13 16:04:59.361][self$setPropertyValue] Setting property "urls" to "https://eutils.ncbi.nlm.nih.gov/entrez/eutils/".
biodb.DEBUG[2024-07-13 16:04:59.361][self$setPropertyValue] Setting property "urls" to "https://pubchem.ncbi.nlm.nih.gov/rest/pug/".
biodb.DEBUG[2024-07-13 16:04:59.362][self$setPropertyValue] Notifying observers about URLs change.
biodb.DEBUG[2024-07-13 16:04:59.363][notifyObservers] Notify observers for notifyConnUrlsUpdated.
biodb.DEBUG[2024-07-13 16:04:59.365][self$setPropertyValue] Setting property "writable" to "FALSE".
biodb.DEBUG[2024-07-13 16:04:59.366][self$setPropertyValue] Setting property "xml.ns" to "http://www.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-07-13 16:04:59.367][self$getEntryFields()$define] Define field ncbi.ccds.id.
biodb.DEBUG[2024-07-13 16:04:59.369][self$getEntryFields()$define] Define field ncbi.gene.id.
biodb.DEBUG[2024-07-13 16:04:59.371][self$getEntryFields()$define] Define field ncbi.pubchem.comp.id.
biodb.DEBUG[2024-07-13 16:04:59.373][self$getEntryFields()$define] Define field ncbi.pubchem.subst.id.
biodb.DEBUG[2024-07-13 16:04:59.375][self$getEntryFields()$define] Define field aa.seq.
biodb.DEBUG[2024-07-13 16:04:59.377][self$getEntryFields()$define] Define field uniprot.id.
biodb.DEBUG[2024-07-13 16:04:59.383][super$initialize] Initialize connector ncbi.pubchem.subst.
biodb.DEBUG[2024-07-13 16:04:59.384][super$initialize] Register connector ncbi.pubchem.subst with the request scheduler
biodb.DEBUG[2024-07-13 16:04:59.386][private$bdb$getRequestScheduler()$re ...] Register connector ncbi.pubchem.subst.
biodb.DEBUG[2024-07-13 16:04:59.387][private$addConnectorRules] Create new rule for URL "pubchem.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2024-07-13 16:04:59.389][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-07-13 16:04:59.390][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-07-13 16:04:59.392][private$addConnectorRules] Create new rule for URL "eutils.ncbi.nlm.nih.gov" of connector "ncbi.pubchem.subst".
biodb.DEBUG[2024-07-13 16:04:59.393][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-07-13 16:04:59.394][self$setFrequency] t=1.000000, n=5.000000
biodb.DEBUG[2024-07-13 16:04:59.396][rule$addConnector] Connector "ncbi.pubchem.subst" is already listed in rule "pubchem.ncbi.nlm.nih.gov".
biodb.DEBUG[2024-07-13 16:04:59.402][biodb$getFactory()$createConn] Creating new connector ncbi.pubchem.subst for database class ncbi.pubchem.subst .
biodb.INFO [2024-07-13 16:04:59.408][biodb::testThat]
biodb.INFO [2024-07-13 16:04:59.409][biodb::testThat] Running test function test.entry.fields (" Entry fields have a correct value ").
biodb.INFO [2024-07-13 16:04:59.410][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:04:59.411][biodb::testThat]
biodb.TRACE[2024-07-13 16:04:59.415][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/biodbNcbi/testref/entry-ncbi.pubchem.subst-3-content.xml".
biodb.DEBUG[2024-07-13 16:04:59.416][biodb$getFactory()$createEntryFromCo ...] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2024-07-13 16:04:59.420][biodb$getFactory()$createEntryFromCo ...] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2024-07-13 16:04:59.422][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:59.423][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:59.425][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:59.431][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:59.432][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:59.433][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:59.435][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:59.438][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:59.439][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:59.441][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.442][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.443][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:59.445][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:59.446][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.447][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.448][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:59.458][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:59.459][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.461][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.462][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:59.464][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:59.465][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.467][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.468][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-07-13 16:04:59.470][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-07-13 16:04:59.471][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.472][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.473][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-07-13 16:04:59.475][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-07-13 16:04:59.476][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.477][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.478][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:59.480][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:59.481][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.482][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.483][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-07-13 16:04:59.485][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-07-13 16:04:59.486][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.487][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.488][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:59.490][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:59.491][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.492][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.493][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:59.495][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:59.496][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.497][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.499][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:59.500][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:59.501][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.502][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.504][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:59.505][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:59.506][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.508][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.509][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:59.510][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:59.511][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.513][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.514][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:59.515][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:59.516][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.518][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:59.519][biodb$getFactory()$createEntryFromCo ...] Accession numbers: 3.
biodb.TRACE[2024-07-13 16:04:59.522][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:04:59.523][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:04:59.524][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.525][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.527][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:04:59.528][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:04:59.529][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.531][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.532][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:59.533][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:59.535][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.536][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.537][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:04:59.538][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:04:59.540][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.541][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.542][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:04:59.543][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:04:59.545][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.546][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.547][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-13 16:04:59.548][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-13 16:04:59.550][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.551][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.552][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-13 16:04:59.554][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-13 16:04:59.555][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.556][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.558][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:59.559][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:59.561][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.562][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.568][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-07-13 16:04:59.570][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-07-13 16:04:59.571][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.572][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.579][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:59.580][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:59.581][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.583][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.584][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:59.585][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:59.587][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.588][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.589][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:59.590][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:59.592][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.593][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.596][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:59.598][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:59.599][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.600][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.601][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:59.603][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:59.604][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.605][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.606][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:59.608][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:59.609][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.610][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.612][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-07-13 16:04:59.613][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-07-13 16:04:59.615][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.616][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.617][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-07-13 16:04:59.619][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-07-13 16:04:59.620][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.621][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.622][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-07-13 16:04:59.624][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-07-13 16:04:59.625][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.626][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.635][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:59.637][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:59.638][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.639][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.641][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:59.642][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:59.643][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.645][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.646][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:59.647][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:59.648][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.650][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.651][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:59.652][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:59.654][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.655][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.656][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:59.658][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:59.659][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.660][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.672][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:59.673][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:59.674][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.676][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.677][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:59.678][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:59.680][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.681][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.682][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:59.684][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:59.685][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.686][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.687][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:59.689][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:59.690][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.691][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.692][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:59.694][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:59.695][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.696][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.708][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:59.709][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:59.711][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.712][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.718][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:59.720][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:59.721][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.722][ef$get] fields variable is a list.
biodb.INFO [2024-07-13 16:04:59.733][biodb::testThat]
biodb.INFO [2024-07-13 16:04:59.735][biodb::testThat] Running test function test.rt.unit (" RT unit is defined when there is an RT value. ").
biodb.INFO [2024-07-13 16:04:59.736][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:04:59.737][biodb::testThat]
biodb.DEBUG[2024-07-13 16:04:59.740][private$loadEntries] Creating entries from ids [1]: "3".
biodb.DEBUG[2024-07-13 16:04:59.742][conn$getEntryContent] Get PubChem Substance entry content(s) for 1 id(s)...
biodb.TRACE[2024-07-13 16:04:59.745][cch$loadFileContent] Trying to load 1 files from cache: [1]: "3".
biodb.TRACE[2024-07-13 16:04:59.747][cch$loadFileContent] file.exist = [1]: "TRUE".
biodb.TRACE[2024-07-13 16:04:59.750][loadFileContents] Loaded 1 files from cache: [1]: "/Users/biocbuild/Library/Caches/org.R-project.R/R/biodb/ncbi.pubchem.subst-e80afa72f6aa7425ca0c72f99f7b9d75/3.xml".
biodb.DEBUG[2024-07-13 16:04:59.751][conn$getEntryContent] 1 PubChem Substance entry content(s) loaded from cache.
biodb.DEBUG[2024-07-13 16:04:59.753][self$createEntryFromContent] Creating PubChem Substance entries from 1 content(s).
biodb.DEBUG[2024-07-13 16:04:59.754][self$createEntryFromContent] Parsing 1 PubChem Substance entries.
biodb.DEBUG[2024-07-13 16:04:59.756][notifyObservers] Notify observers for notifyProgress.
biodb.DEBUG[2024-07-13 16:04:59.757][FUN] Trying to call function notifyProgress on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:04:59.759][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:04:59.765][FUN] Trying to call function notifyProgress on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:04:59.766][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:04:59.767][FUN] Trying to call function notifyProgress on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:04:59.769][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
biodb.TRACE[2024-07-13 16:04:59.772][ef$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:59.773][ef$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:59.774][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.776][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.777][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:59.779][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:59.780][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.781][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.783][ef$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:59.784][ef$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:59.786][ef$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.787][ef$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.788][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:59.790][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.comp.id.
biodb.TRACE[2024-07-13 16:04:59.791][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.792][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.794][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-07-13 16:04:59.795][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-07-13 16:04:59.796][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.798][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.799][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-07-13 16:04:59.800][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-07-13 16:04:59.801][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.803][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.804][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:59.805][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:59.806][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.808][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.809][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-07-13 16:04:59.810][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.pubchem.subst.id.
biodb.TRACE[2024-07-13 16:04:59.811][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.813][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.814][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:59.815][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:59.817][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.818][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.819][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:59.820][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:59.822][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.823][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.824][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:59.825][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:59.827][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.828][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.829][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:59.831][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:59.832][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.833][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.834][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:59.836][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:59.837][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.838][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.839][self$getBiodb()$getEntryFields()$get] Asked field names are: accession.
biodb.TRACE[2024-07-13 16:04:59.841][self$getBiodb()$getEntryFields()$get] Realnames of fields are: accession.
biodb.TRACE[2024-07-13 16:04:59.842][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.843][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.DEBUG[2024-07-13 16:04:59.844][self$createEntryFromContent] Accession numbers: 3.
biodb.TRACE[2024-07-13 16:04:59.846][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.
biodb.TRACE[2024-07-13 16:04:59.847][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.
biodb.TRACE[2024-07-13 16:04:59.848][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.849][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.851][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.min.
biodb.TRACE[2024-07-13 16:04:59.852][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.min.
biodb.TRACE[2024-07-13 16:04:59.853][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.854][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.856][self$getBiodb()$getEntryFields()$get] Asked field names are: chrom.rt.max.
biodb.TRACE[2024-07-13 16:04:59.857][self$getBiodb()$getEntryFields()$get] Realnames of fields are: chrom.rt.max.
biodb.TRACE[2024-07-13 16:04:59.858][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.859][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-13 16:04:59.870][biodb::testThat]
biodb.INFO [2024-07-13 16:04:59.872][biodb::testThat] Running test function test.searchForEntries (" We can search for an entry by searchable field ").
biodb.INFO [2024-07-13 16:04:59.873][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:04:59.874][biodb::testThat]
biodb.INFO [2024-07-13 16:04:59.890][biodb::testThat]
biodb.INFO [2024-07-13 16:04:59.892][biodb::testThat] Running test function test.searchByName (" We can search for an entry by name. ").
biodb.INFO [2024-07-13 16:04:59.893][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:04:59.894][biodb::testThat]
biodb.WARN [2024-07-13 16:04:59.899][self$searchForEntries] This database is not searchable by field "name".
biodb.WARN [2024-07-13 16:04:59.904][self$searchForEntries] This database is not searchable by field "name".
biodb.INFO [2024-07-13 16:04:59.915][biodb::testThat]
biodb.INFO [2024-07-13 16:04:59.917][biodb::testThat] Running test function testEntryLoading (" We can load an entry from the database. ").
biodb.INFO [2024-07-13 16:04:59.918][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:04:59.919][biodb::testThat]
biodb.TRACE[2024-07-13 16:04:59.933][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:04:59.934][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:04:59.935][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.937][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.938][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:04:59.939][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:04:59.940][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.942][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.943][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:59.944][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:59.946][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.947][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.948][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:04:59.950][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:04:59.951][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.952][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.953][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:04:59.955][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:04:59.956][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.957][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.959][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-13 16:04:59.960][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-13 16:04:59.961][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.962][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.964][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-13 16:04:59.965][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-13 16:04:59.966][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.967][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.970][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:04:59.971][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:04:59.973][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.974][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.975][self$getBiodb()$getEntryFields()$get] Asked field names are: aa.seq.
biodb.TRACE[2024-07-13 16:04:59.976][self$getBiodb()$getEntryFields()$get] Realnames of fields are: aa.seq.
biodb.TRACE[2024-07-13 16:04:59.978][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.979][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.980][self$getBiodb()$getEntryFields()$get] Asked field names are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:59.982][self$getBiodb()$getEntryFields()$get] Realnames of fields are: ncbi.ccds.id.
biodb.TRACE[2024-07-13 16:04:59.983][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.984][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.985][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:04:59.987][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:04:59.988][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.989][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.991][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mz.
biodb.TRACE[2024-07-13 16:04:59.992][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mz.
biodb.TRACE[2024-07-13 16:04:59.993][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.994][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:04:59.996][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mzexp.
biodb.TRACE[2024-07-13 16:04:59.997][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mzexp.
biodb.TRACE[2024-07-13 16:04:59.998][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:04:59.999][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.TRACE[2024-07-13 16:05:00.001][self$getBiodb()$getEntryFields()$get] Asked field names are: peak.mztheo.
biodb.TRACE[2024-07-13 16:05:00.002][self$getBiodb()$getEntryFields()$get] Realnames of fields are: peak.mztheo.
biodb.TRACE[2024-07-13 16:05:00.003][self$getBiodb()$getEntryFields()$get] 1 fields were returned.
biodb.TRACE[2024-07-13 16:05:00.004][self$getBiodb()$getEntryFields()$get] fields variable is a list.
biodb.INFO [2024-07-13 16:05:00.012][biodb::testThat]
biodb.INFO [2024-07-13 16:05:00.014][biodb::testThat] Running test function test.entry.page.url (" We can get a URL pointing to the entry page. ").
biodb.INFO [2024-07-13 16:05:00.015][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:05:00.016][biodb::testThat]
biodb.INFO [2024-07-13 16:05:00.026][biodb::testThat]
biodb.INFO [2024-07-13 16:05:00.027][biodb::testThat] Running test function test.entry.image.url (" We can get a URL pointing to the entry image. ").
biodb.INFO [2024-07-13 16:05:00.029][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:05:00.030][biodb::testThat]
biodb.INFO [2024-07-13 16:05:00.040][biodb::testThat]
biodb.INFO [2024-07-13 16:05:00.042][biodb::testThat] Running test function test.entry.page.url.download (" The entry page URL can be downloaded. ").
biodb.INFO [2024-07-13 16:05:00.043][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:05:00.044][biodb::testThat]
biodb.DEBUG[2024-07-13 16:05:00.048][function(conn, opt)] Trying to download "https://pubchem.ncbi.nlm.nih.gov/substance/3".
biodb.DEBUG[2024-07-13 16:05:00.169][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/substance/3.
biodb.INFO [2024-07-13 16:05:00.296][biodb::testThat]
biodb.INFO [2024-07-13 16:05:00.297][biodb::testThat] Running test function test.entry.image.url.download (" The entry image URL can be downloaded. ").
biodb.INFO [2024-07-13 16:05:00.298][biodb::testThat] --------------------------------------------------------------------------------
biodb.INFO [2024-07-13 16:05:00.299][biodb::testThat]
biodb.DEBUG[2024-07-13 16:05:00.424][getUrlContent] Use RCurl for downloading content of URL https://pubchem.ncbi.nlm.nih.gov/image/imgsrv.fcgi?sid=3&t=l.
biodb.INFO [2024-07-13 16:05:00.518][biodb$terminate] Closing BiodbMain instance...
biodb.DEBUG[2024-07-13 16:05:00.520][private$conn[[conn]]$.__enclos_env__ ...] Unregister connector ncbi.pubchem.subst from the request scheduler
biodb.INFO [2024-07-13 16:05:00.521][self$deleteConn] Connector "ncbi.pubchem.subst" deleted.
biodb.DEBUG[2024-07-13 16:05:00.522][notifyObservers] Notify observers for terminate.
biodb.DEBUG[2024-07-13 16:05:00.523][FUN] Trying to call function terminate on observer BiodbTestMsgAck.
biodb.DEBUG[2024-07-13 16:05:00.524][FUN] Functions in observer BiodbTestMsgAck: [4]: ".__enclos_env__, clone, notifyProgress, initialize".
biodb.DEBUG[2024-07-13 16:05:00.525][FUN] Trying to call function terminate on observer BiodbEntryFields.
biodb.DEBUG[2024-07-13 16:05:00.527][FUN] Functions in observer BiodbEntryFields: [15]: ".__enclos_env__, clone, terminate, define, print, getDatabaseIdField, getFieldNames, get, getRealName, checkIsDefined, isDefined, formatName, isAlias, notifyCfgUpdate, initialize".
biodb.DEBUG[2024-07-13 16:05:00.528][FUN] Trying to call function terminate on observer BiodbConfig.
biodb.DEBUG[2024-07-13 16:05:00.529][FUN] Functions in observer BiodbConfig: [21]: ".__enclos_env__, clone, terminate, notifyNewObservers, define, getAssocEnvVar, listKeys, print, disable, enable, reset, set, get, isEnabled, isDefined, hasKey, getDefaultValue, getDescription, getTitle, getKeys, initialize".
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1029 ]
[ FAIL 0 | WARN 1 | SKIP 0 | PASS 1029 ]
>
> proc.time()
user system elapsed
56.537 2.113 88.232
##############################################################################
##############################################################################
###
### Running command:
###
### /Library/Frameworks/R.framework/Resources/bin/R CMD check --test-dir=longtests --no-stop-on-test-error --no-codoc --no-examples --no-manual --ignore-vignettes --check-subdirs=no biodbNcbi_1.8.0.tar.gz
###
##############################################################################
##############################################################################
* using log directory ‘/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck’
* using R version 4.4.1 (2024-06-14)
* using platform: x86_64-apple-darwin20
* R was compiled by
Apple clang version 14.0.0 (clang-1400.0.29.202)
GNU Fortran (GCC) 12.2.0
* running under: macOS Monterey 12.7.5
* using session charset: UTF-8
* using options ‘--no-codoc --no-examples --no-manual --ignore-vignettes --no-stop-on-test-error’
* checking for file ‘biodbNcbi/DESCRIPTION’ ... OK
* this is package ‘biodbNcbi’ version ‘1.8.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘biodbNcbi’ can be installed ... OK
* checking installed package size ... NOTE
installed size is 8.1Mb
sub-directories of 1Mb or more:
testref 7.6Mb
* checking package directory ... OK
* checking DESCRIPTION meta-information ... NOTE
Malformed Title field: should not end in a period.
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... SKIPPED
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... SKIPPED
* checking examples ... SKIPPED
* checking for unstated dependencies in ‘longtests’ ... WARNING
'library' or 'require' call not declared from: ‘biodbNci’
* checking tests in ‘longtests’ ...
Running ‘testthat.R’
OK
* DONE
Status: 1 WARNING, 2 NOTEs
See
‘/Users/biocbuild/bbs-3.19-bioc-longtests/meat/biodbNcbi.Rcheck/00check.log’
for details.
biodbNcbi.Rcheck/00install.out
* installing *source* package ‘biodbNcbi’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (biodbNcbi)